4ry0 - Revision history

OCA at 12:56, 1 March 2024

OCA — Fri, 01 Mar 2024 12:56:51 GMT

←Older revision		Revision as of 12:56, 1 March 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhizobium_etli_CFN_42 Rhizobium etli CFN 42]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhizobium_etli_CFN_42 Rhizobium etli CFN 42]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.4Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [https://pdbe.org/4ry0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [https://www.ebi.ac.uk/pdbsum/4ry0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ry0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [https://pdbe.org/4ry0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [https://www.ebi.ac.uk/pdbsum/4ry0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ry0 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:33, 15 March 2023

OCA — Wed, 15 Mar 2023 10:33:17 GMT

←Older revision		Revision as of 10:33, 15 March 2023
Line 1:		Line 1:

	==Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose==		==Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose==
-	<StructureSection load='4ry0' size='340' side='right' caption='[[4ry0]], [[Resolution\|resolution]] 1.40Å' scene=''>	+	<StructureSection load='4ry0' size='340' side='right'caption='[[4ry0]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Rhiec Rhiec~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhizobium_etli_CFN_42 Rhizobium etli CFN 42]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RHE_PF00037 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=347834 RHIEC])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [https://pdbe.org/4ry0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [https://www.ebi.ac.uk/pdbsum/4ry0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ry0 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [~~http~~://pdbe.org/4ry0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ry0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ry0 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/APIBP_RHIEC APIBP_RHIEC] Part of an ABC transporter complex involved in D-apiose import (Probable). Binds D-apiose, D-ribose and D-ribulose (PubMed:29867142).<ref>PMID:29867142</ref> <ref>PMID:29867142</ref>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Rhiec~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Almo, S C~~]]	+	[[Category: Rhizobium etli CFN 42]]
-	[[Category: ~~Attonito, J D~~]]	+	[[Category: Al Obaidi N]]
-	[[Category: ~~Bhosle, R~~]]	+	[[Category: Almo SC]]
-	[[Category: ~~Chamala, S~~]]	+	[[Category: Attonito JD]]
-	[[Category: ~~Chowdhury, S~~]]	+	[[Category: Bhosle R]]
-	[[Category: ~~EFI, Enzyme Function Initiative~~]]	+	[[Category: Chamala S]]
-	[[Category: ~~Gerlt, J A~~]]	+	[[Category: Chowdhury S]]
-	[[Category: ~~Glenn, A Scott~~]]	+	[[Category: Gerlt JA]]
-	[[Category: Hillerich, B]]	+	[[Category: Hillerich B]]
-	[[Category: Lafleur, J]]	+	[[Category: Lafleur J]]
-	[[Category: Love, J]]	+	[[Category: Love J]]
-	[[Category: Morisco~~, L L~~]]	+	[[Category: Morisco LL]]
-	[[Category: ~~Obaidi, N Al~~]]	+	[[Category: Patskovsky Y]]
-	[[Category: ~~Patskovsky, Y~~]]	+	[[Category: Scott Glenn A]]
-	[[Category: Siedel~~, R D~~]]	+	[[Category: Siedel RD]]
-	[[Category: Toro, R]]	+	[[Category: Toro R]]
-	[[Category: Wasserman~~, S R~~]]	+	[[Category: Wasserman SR]]
-	[[Category: Whalen~~, K L]]~~	+	[[Category: Whalen KL]]
-	~~[[Category: Efi]]~~	+
-	~~[[Category: Enzyme function initiative]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Sugar transporter]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 20:21, 24 January 2018

OCA — Wed, 24 Jan 2018 20:21:18 GMT

←Older revision		Revision as of 20:21, 24 January 2018
Line 3:		Line 3:
	<StructureSection load='4ry0' size='340' side='right' caption='[[4ry0]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='4ry0' size='340' side='right' caption='[[4ry0]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhiec Rhiec]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RHE_PF00037 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=347834 RHIEC])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [http://pdbe.org/4ry0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ry0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ry0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [http://pdbe.org/4ry0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ry0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ry0 ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Rhiec]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Attonito, J D]]		[[Category: Attonito, J D]]
Line 14:		Line 16:
	[[Category: Chamala, S]]		[[Category: Chamala, S]]
	[[Category: Chowdhury, S]]		[[Category: Chowdhury, S]]
-	[[Category: ~~Efi~~, Enzyme Function Initiative]]	+	[[Category: EFI, Enzyme Function Initiative]]
	[[Category: Gerlt, J A]]		[[Category: Gerlt, J A]]
	[[Category: Glenn, A Scott]]		[[Category: Glenn, A Scott]]

OCA at 05:11, 5 August 2016

OCA — Fri, 05 Aug 2016 05:11:29 GMT

←Older revision		Revision as of 05:11, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose==		==Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose==
	<StructureSection load='4ry0' size='340' side='right' caption='[[4ry0]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='4ry0' size='340' side='right' caption='[[4ry0]], [[Resolution\|resolution]] 1.40Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ry0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [http://pdbe.org/4ry0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ry0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ry0 ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA at 09:35, 31 December 2014

OCA — Wed, 31 Dec 2014 09:35:44 GMT

←Older revision		Revision as of 09:35, 31 December 2014
Line 22:		Line 22:
	[[Category: Obaidi, N Al]]		[[Category: Obaidi, N Al]]
	[[Category: Patskovsky, Y]]		[[Category: Patskovsky, Y]]
-	[[Category: ~~Siede~~, R D]]	+	[[Category: Siedel, R D]]
	[[Category: Toro, R]]		[[Category: Toro, R]]
	[[Category: Wasserman, S R]]		[[Category: Wasserman, S R]]

OCA: Protected "4ry0" [edit=sysop:move=sysop]

OCA — Wed, 24 Dec 2014 11:11:44 GMT

Protected "4ry0" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:11, 24 December 2014

OCA: New page: ==Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose== == Structural highlights ==
<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ry0 PDBsum]</span></td></tr>
</table>
TOC
</StructureSection>
[[Category: Almo, S C]]
[[Category: Attonito, J D]]
[[Category: Bhosle, R]]
[[Category: Chamala, S]]
[[Category: Chowdhury, S]]
[[Category: Efi, Enzyme Function Initiative]]
[[Category: Gerlt, J A]]
[[Category: Glenn, A Scott]]
[[Category: Hillerich, B]]
[[Category: Lafleur, J]]
[[Category: Love, J]]
[[Category: Morisco, L L]]
[[Category: Obaidi, N Al]]
[[Category: Patskovsky, Y]]
[[Category: Siede, R D]]
[[Category: Toro, R]]
[[Category: Wasserman, S R]]
[[Category: Whalen, K L]]
[[Category: Efi]]
[[Category: Enzyme function initiative]]
[[Category: Structural genomic]]
[[Category: Sugar transporter]]
[[Category: Transport protein]]