4s0m - Revision history

OCA at 18:00, 20 September 2023

OCA — Wed, 20 Sep 2023 18:00:25 GMT

←Older revision		Revision as of 18:00, 20 September 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4s0m]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4S0M FirstGlance]. <br>		<table><tr><td colspan='2'>[[4s0m]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4S0M FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.922Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4s0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0m OCA], [https://pdbe.org/4s0m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4s0m RCSB], [https://www.ebi.ac.uk/pdbsum/4s0m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0m ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4s0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0m OCA], [https://pdbe.org/4s0m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4s0m RCSB], [https://www.ebi.ac.uk/pdbsum/4s0m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0m ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:37, 15 March 2023

OCA — Wed, 15 Mar 2023 10:37:39 GMT

←Older revision		Revision as of 10:37, 15 March 2023
Line 3:		Line 3:
	<StructureSection load='4s0m' size='340' side='right'caption='[[4s0m]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='4s0m' size='340' side='right'caption='[[4s0m]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4s0m]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Aciba Aciba~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0M OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4S0M FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4s0m]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4S0M FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ABBL099_02780, BL01_17035, FL75_03050, FL80_07750, GQ86_04945, IOMTU433_3298, IX87_17090, LX00_02580, ndk, P795_14800 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=470 ACIBA])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4s0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0m OCA], [https://pdbe.org/4s0m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4s0m RCSB], [https://www.ebi.ac.uk/pdbsum/4s0m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0m ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4s0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0m OCA], [~~http~~://pdbe.org/4s0m PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4s0m RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4s0m PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0m ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/V5VIC4_ACIBA V5VIC4_ACIBA]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]	+	[https://www.uniprot.org/uniprot/V5VIC4_ACIBA V5VIC4_ACIBA] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]

	==See Also==		==See Also==
-	*[[Nucleoside diphosphate kinase\|Nucleoside diphosphate kinase]]	+	*[[Nucleoside diphosphate kinase 3D structures\|Nucleoside diphosphate kinase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aciba~~]]	+	[[Category: Acinetobacter baumannii]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Nucleoside-diphosphate kinase]]~~	+	[[Category: Kaur P]]
-	[[Category: Kaur, P]]	+	[[Category: Sharma S]]
-	[[Category: Sharma, S]]	+	[[Category: Shukla PK]]
-	[[Category: Shukla~~, P K~~]]	+	[[Category: Sikarwar J]]
-	[[Category: Sikarwar, J]]	+	[[Category: Singh TP]]
-	[[Category: Singh~~, T P]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 10:27, 1 May 2019

OCA — Wed, 01 May 2019 10:27:58 GMT

←Older revision		Revision as of 10:27, 1 May 2019
Line 1:		Line 1:

	==Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from acinetobacter baumannii==		==Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from acinetobacter baumannii==
-	<StructureSection load='4s0m' size='340' side='right' caption='[[4s0m]], [[Resolution\|resolution]] 1.92Å' scene=''>	+	<StructureSection load='4s0m' size='340' side='right'caption='[[4s0m]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4s0m]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S0M FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4s0m]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Aciba Aciba]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S0M FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ABBL099_02780, BL01_17035, FL75_03050, FL80_07750, GQ86_04945, IOMTU433_3298, IX87_17090, LX00_02580, ndk, P795_14800 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=470 ACIBA])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0m OCA], [http://pdbe.org/4s0m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s0m RCSB], [http://www.ebi.ac.uk/pdbsum/4s0m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0m ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0m OCA], [http://pdbe.org/4s0m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s0m RCSB], [http://www.ebi.ac.uk/pdbsum/4s0m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0m ProSAT]</span></td></tr>
Line 10:		Line 11:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/V5VIC4_ACIBA V5VIC4_ACIBA]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]		[[http://www.uniprot.org/uniprot/V5VIC4_ACIBA V5VIC4_ACIBA]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]
		+
		+	==See Also==
		+	*[[Nucleoside diphosphate kinase\|Nucleoside diphosphate kinase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aciba]]
		+	[[Category: Large Structures]]
	[[Category: Nucleoside-diphosphate kinase]]		[[Category: Nucleoside-diphosphate kinase]]
	[[Category: Kaur, P]]		[[Category: Kaur, P]]

OCA at 01:17, 19 January 2017

OCA — Thu, 19 Jan 2017 01:17:51 GMT

←Older revision		Revision as of 01:17, 19 January 2017
Line 1:		Line 1:
		+
	==Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from acinetobacter baumannii==		==Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from acinetobacter baumannii==
	<StructureSection load='4s0m' size='340' side='right' caption='[[4s0m]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='4s0m' size='340' side='right' caption='[[4s0m]], [[Resolution\|resolution]] 1.92Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4s0m RCSB], [http://www.ebi.ac.uk/pdbsum/4s0m PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0m OCA], [http://pdbe.org/4s0m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4s0m RCSB], [http://www.ebi.ac.uk/pdbsum/4s0m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4s0m ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 11:59, 12 February 2015

OCA — Thu, 12 Feb 2015 11:59:58 GMT

←Older revision		Revision as of 11:59, 12 February 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from acinetobacter baumannii==
-		+	<StructureSection load='4s0m' size='340' side='right' caption='[[4s0m]], [[Resolution\|resolution]] 1.92Å' scene=''>
-	~~The entry~~ 4s0m is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4s0m]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S0M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S0M FirstGlance]. <br>
-	~~Authors~~: ~~Sikarwar, J~~.~~, Shukla, P~~.K.~~, Kaur, P~~.~~, Sharma, S~~.~~, Singh, T~~.P.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
-	~~Description~~: ~~Crystal Structure of nucleoside~~ diphosphate kinase ~~at 1~~.~~92 A resolution from acinetobacter baumannii~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s0m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4s0m RCSB], [http://www.ebi.ac.uk/pdbsum/4s0m PDBsum]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[~~[Category~~: ~~Singh~~, T.P]]	+	== Function ==
-	[[~~Category~~: ~~Sharma, S~~]]	+	[[http://www.uniprot.org/uniprot/V5VIC4_ACIBA V5VIC4_ACIBA]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]
-	[[Category: ~~Shukla, P.K~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Nucleoside-diphosphate kinase]]
	[[Category: Kaur, P]]		[[Category: Kaur, P]]
		+	[[Category: Sharma, S]]
		+	[[Category: Shukla, P K]]
	[[Category: Sikarwar, J]]		[[Category: Sikarwar, J]]
		+	[[Category: Singh, T P]]
		+	[[Category: Kinase]]
		+	[[Category: Transferase]]

OCA at 13:34, 28 January 2015

OCA — Wed, 28 Jan 2015 13:34:15 GMT

←Older revision		Revision as of 13:34, 28 January 2015
Line 3:		Line 3:
	The entry 4s0m is ON HOLD		The entry 4s0m is ON HOLD

-	Authors: Sikarwar, J., Shukla, P.K. , Kaur, P. , Sharma, S. , Singh, T.P.	+	Authors: Sikarwar, J., Shukla, P.K., Kaur, P., Sharma, S., Singh, T.P.

	Description: Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from acinetobacter baumannii		Description: Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from acinetobacter baumannii
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: ~~Shukla~~, P.~~K. , Kaur,~~ P~~. ,~~ Sharma, S. , ~~Singh, T.~~P]]	+	[[Category: Singh, T.P]]
		+	[[Category: Sharma, S]]
		+	[[Category: Shukla, P.K]]
		+	[[Category: Kaur, P]]
	[[Category: Sikarwar, J]]		[[Category: Sikarwar, J]]

OCA: Protected "4s0m" [edit=sysop:move=sysop]

OCA — Wed, 14 Jan 2015 10:58:08 GMT

Protected "4s0m" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:58, 14 January 2015

OCA: New page: '''Unreleased structure''' The entry 4s0m is ON HOLD Authors: Sikarwar, J., Shukla, P.K. , Kaur, P. , Sharma, S. , Singh, T.P. Description: Crystal Structure of nucleoside diphosphate ...

OCA — Wed, 14 Jan 2015 10:58:07 GMT

New page: '''Unreleased structure''' The entry 4s0m is ON HOLD Authors: Sikarwar, J., Shukla, P.K. , Kaur, P. , Sharma, S. , Singh, T.P. Description: Crystal Structure of nucleoside diphosphate ...

New page

'''Unreleased structure'''

The entry 4s0m is ON HOLD

Authors: Sikarwar, J., Shukla, P.K. , Kaur, P. , Sharma, S. , Singh, T.P.

Description: Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from acinetobacter baumannii
[[Category: Unreleased Structures]]
[[Category: Shukla, P.K. , Kaur, P. , Sharma, S. , Singh, T.P]]
[[Category: Sikarwar, J]]