4tlh - Revision history

OCA at 00:46, 28 December 2023

OCA — Thu, 28 Dec 2023 00:46:32 GMT

←Older revision		Revision as of 00:46, 28 December 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4tlh]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens_E_str._JGS1987 Clostridium perfringens E str. JGS1987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TLH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4TLH FirstGlance]. <br>		<table><tr><td colspan='2'>[[4tlh]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens_E_str._JGS1987 Clostridium perfringens E str. JGS1987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TLH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4TLH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4tlh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tlh OCA], [https://pdbe.org/4tlh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4tlh RCSB], [https://www.ebi.ac.uk/pdbsum/4tlh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4tlh ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4tlh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tlh OCA], [https://pdbe.org/4tlh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4tlh RCSB], [https://www.ebi.ac.uk/pdbsum/4tlh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4tlh ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:45, 15 March 2023

OCA — Wed, 15 Mar 2023 10:45:15 GMT

←Older revision		Revision as of 10:45, 15 March 2023
Line 1:		Line 1:

	==Monoclinic Crystal Structure of EutL from Clostridium Perfringens==		==Monoclinic Crystal Structure of EutL from Clostridium Perfringens==
-	<StructureSection load='4tlh' size='340' side='right' caption='[[4tlh]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='4tlh' size='340' side='right'caption='[[4tlh]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4tlh]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Clostridium_perfringens_e_str~~.~~_jgs1987~~ Clostridium perfringens e str. ~~jgs1987~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TLH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4TLH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4tlh]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens_E_str._JGS1987 Clostridium perfringens E str. JGS1987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TLH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4TLH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">eutL, AC3_1081 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=451755 Clostridium perfringens E str. JGS1987])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4tlh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tlh OCA], [https://pdbe.org/4tlh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4tlh RCSB], [https://www.ebi.ac.uk/pdbsum/4tlh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4tlh ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4tlh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tlh OCA], [~~http~~://pdbe.org/4tlh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4tlh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4tlh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4tlh ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/EUTL_CLOPE EUTL_CLOPE] A component of the bacterial microcompartment (BMC) shell dedicated to ethanolamine degradation. May be involved in cofactor diffusion across the BMC (Probable). Cobalamin is covalently bound to 1 subunit of the trimer on the concave (lumenal) face in a closed pore conformation; whether this is physiologically relevant is unclear (PubMed:25484204). The closed form has 3 very narrow channels (1.3 Angstrom at their narrowest) per trimer lined by acidic and aromatic residues; 2 ethanolamine molecules can bind in each channel, on either side of the constriction. Does not bind acetate, ethanol or acetyl phosphate, all of which are small molecules involved in ethanolamine metabolism (PubMed:25752492). Ethanolamine-binding has been hypothesized to stabilize the EutL central pore in a closed (non-transporting) state. An open pore is thought to be large enough to transport ATP and/or cobalamin (Probable).<ref>PMID:25484204</ref> <ref>PMID:25752492</ref> <ref>PMID:25484204</ref> <ref>PMID:25752492</ref> <ref>PMID:29717712</ref>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Clostridium perfringens e str. ~~jgs1987~~]]	+	[[Category: Clostridium perfringens E str. JGS1987]]
-	[[Category: ~~Thompson, M C~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Yeates, T O~~]]	+	[[Category: Thompson MC]]
-	[[Category: ~~Bacterial microcompartment]]~~	+	[[Category: Yeates TO]]
-	~~[[Category: Bmc shell protein]]~~	+
-	~~[[Category: Ethanolamine]]~~	+
-	~~[[Category: Eut]]~~	+
-	~~[[Category: Microcrystallography]]~~	+
-	~~[[Category: Structural polymorphism]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 09:14, 22 November 2017

OCA — Wed, 22 Nov 2017 09:14:58 GMT

←Older revision		Revision as of 09:14, 22 November 2017
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	<StructureSection load='4tlh' size='340' side='right' caption='[[4tlh]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='4tlh' size='340' side='right' caption='[[4tlh]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4tlh]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TLH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TLH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4tlh]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens_e_str._jgs1987 Clostridium perfringens e str. jgs1987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TLH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TLH FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">eutL, AC3_1081 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=451755 Clostridium perfringens E str. JGS1987])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tlh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tlh OCA], [http://pdbe.org/4tlh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4tlh RCSB], [http://www.ebi.ac.uk/pdbsum/4tlh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4tlh ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tlh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tlh OCA], [http://pdbe.org/4tlh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4tlh RCSB], [http://www.ebi.ac.uk/pdbsum/4tlh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4tlh ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Clostridium perfringens e str. jgs1987]]
	[[Category: Thompson, M C]]		[[Category: Thompson, M C]]
	[[Category: Yeates, T O]]		[[Category: Yeates, T O]]

OCA at 02:04, 11 March 2017

OCA — Sat, 11 Mar 2017 02:04:45 GMT

←Older revision		Revision as of 02:04, 11 March 2017
Line 1:		Line 1:
		+
	==Monoclinic Crystal Structure of EutL from Clostridium Perfringens==		==Monoclinic Crystal Structure of EutL from Clostridium Perfringens==
	<StructureSection load='4tlh' size='340' side='right' caption='[[4tlh]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='4tlh' size='340' side='right' caption='[[4tlh]], [[Resolution\|resolution]] 1.70Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[4tlh]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TLH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TLH FirstGlance]. <br>		<table><tr><td colspan='2'>[[4tlh]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TLH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TLH FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tlh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tlh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4tlh RCSB], [http://www.ebi.ac.uk/pdbsum/4tlh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tlh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tlh OCA], [http://pdbe.org/4tlh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4tlh RCSB], [http://www.ebi.ac.uk/pdbsum/4tlh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4tlh ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA at 14:06, 10 June 2015

OCA — Wed, 10 Jun 2015 14:06:53 GMT

←Older revision		Revision as of 14:06, 10 June 2015
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-	'''~~Unreleased structure~~'''	+	==Monoclinic Crystal Structure of EutL from Clostridium Perfringens==
-		+	<StructureSection load='4tlh' size='340' side='right' caption='[[4tlh]], [[Resolution\|resolution]] 1.70Å' scene=''>
-	~~The entry~~ 4tlh is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4tlh]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TLH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TLH FirstGlance]. <br>
-	~~Authors~~: ~~Thompson, M~~.C.~~, Yeates, T~~.O.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tlh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tlh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4tlh RCSB], [http://www.ebi.ac.uk/pdbsum/4tlh PDBsum]</span></td></tr>
-	~~Description~~: ~~Monoclinic Crystal Structure of EutL from Clostridium Perfringens~~	+	</table>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	__TOC__
-	[[Category: Thompson, M.C]]	+	</StructureSection>
-	[[Category: Yeates, T.O]]	+	[[Category: Thompson, M C]]
		+	[[Category: Yeates, T O]]
		+	[[Category: Bacterial microcompartment]]
		+	[[Category: Bmc shell protein]]
		+	[[Category: Ethanolamine]]
		+	[[Category: Eut]]
		+	[[Category: Microcrystallography]]
		+	[[Category: Structural polymorphism]]
		+	[[Category: Transport protein]]

OCA at 17:41, 24 December 2014

OCA — Wed, 24 Dec 2014 17:41:43 GMT

←Older revision		Revision as of 17:41, 24 December 2014
Line 6:		Line 6:

	Description: Monoclinic Crystal Structure of EutL from Clostridium Perfringens		Description: Monoclinic Crystal Structure of EutL from Clostridium Perfringens
		+	[[Category: Unreleased Structures]]
		+	[[Category: Thompson, M.C]]
		+	[[Category: Yeates, T.O]]

OCA at 07:08, 30 July 2014

OCA — Wed, 30 Jul 2014 07:08:07 GMT

←Older revision		Revision as of 07:08, 30 July 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4tlh is ON HOLD	+	The entry 4tlh is ON HOLD until Paper Publication

	Authors: Thompson, M.C., Yeates, T.O.		Authors: Thompson, M.C., Yeates, T.O.

	Description: Monoclinic Crystal Structure of EutL from Clostridium Perfringens		Description: Monoclinic Crystal Structure of EutL from Clostridium Perfringens

OCA at 08:11, 11 June 2014

OCA — Wed, 11 Jun 2014 08:11:52 GMT

←Older revision		Revision as of 08:11, 11 June 2014
Line 3:		Line 3:
	The entry 4tlh is ON HOLD		The entry 4tlh is ON HOLD

-	Authors: Thompson, ~~Michael~~ C., Yeates, ~~Todd~~ O.	+	Authors: Thompson, M.C., Yeates, T.O.

	Description: Monoclinic Crystal Structure of EutL from Clostridium Perfringens		Description: Monoclinic Crystal Structure of EutL from Clostridium Perfringens

OCA: Protected "4tlh" [edit=sysop:move=sysop]

OCA — Wed, 04 Jun 2014 05:00:13 GMT

Protected "4tlh" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:00, 4 June 2014

OCA: New page: '''Unreleased structure''' The entry 4tlh is ON HOLD Authors: Thompson, Michael C., Yeates, Todd O. Description: Monoclinic Crystal Structure of EutL from Clostridium Perfringens

OCA — Wed, 04 Jun 2014 05:00:13 GMT

New page: '''Unreleased structure''' The entry 4tlh is ON HOLD Authors: Thompson, Michael C., Yeates, Todd O. Description: Monoclinic Crystal Structure of EutL from Clostridium Perfringens

New page

'''Unreleased structure'''

The entry 4tlh is ON HOLD

Authors: Thompson, Michael C., Yeates, Todd O.

Description: Monoclinic Crystal Structure of EutL from Clostridium Perfringens