4u47 - Revision history

OCA at 12:26, 20 December 2023

OCA — Wed, 20 Dec 2023 12:26:38 GMT

←Older revision		Revision as of 12:26, 20 December 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4u47]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4U47 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4u47]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4U47 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TB:TERBIUM(III)+ION'>TB</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.952Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TB:TERBIUM(III)+ION'>TB</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4u47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u47 OCA], [https://pdbe.org/4u47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4u47 RCSB], [https://www.ebi.ac.uk/pdbsum/4u47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4u47 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4u47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u47 OCA], [https://pdbe.org/4u47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4u47 RCSB], [https://www.ebi.ac.uk/pdbsum/4u47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4u47 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:01, 22 March 2023

OCA — Wed, 22 Mar 2023 08:01:07 GMT

←Older revision		Revision as of 08:01, 22 March 2023
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	<StructureSection load='4u47' size='340' side='right'caption='[[4u47]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='4u47' size='340' side='right'caption='[[4u47]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4u47]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U47 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4U47 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4u47]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4U47 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TB:TERBIUM(III)+ION'>TB</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TB:TERBIUM(III)+ION'>TB</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4u3l\|4u3l]], [[4u3r\|4u3r]], [[4u3o\|4u3o]], [[4u3p\|4u3p]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4u47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u47 OCA], [https://pdbe.org/4u47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4u47 RCSB], [https://www.ebi.ac.uk/pdbsum/4u47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4u47 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4u47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u47 OCA], [~~http~~://pdbe.org/4u47 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4u47 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4u47 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4u47 ProSAT]</span></td></tr>	+
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Olieric, V]]	+	[[Category: Synthetic construct]]
-	[[Category: Peng, G]]	+	[[Category: Olieric V]]
-	[[Category: Schaffer~~, M F~~]]	+	[[Category: Peng G]]
-	[[Category: Schnabl, J]]	+	[[Category: Schaffer MF]]
-	[[Category: Sigel~~, R K.O~~]]	+	[[Category: Schnabl J]]
-	[[Category: Spingler, B]]	+	[[Category: Sigel RKO]]
-	~~[[Category: Di- and trivalent metal ion]]~~	+	[[Category: Spingler B]]
-	~~[[Category: Duplex]]~~	+
-	~~[[Category: Rna~~]]	+

OCA at 15:12, 10 May 2019

OCA — Fri, 10 May 2019 15:12:26 GMT

←Older revision		Revision as of 15:12, 10 May 2019
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	==Octameric RNA duplex soaked in terbium(III)chloride==		==Octameric RNA duplex soaked in terbium(III)chloride==
-	<StructureSection load='4u47' size='340' side='right' caption='[[4u47]], [[Resolution\|resolution]] 1.95Å' scene=''>	+	<StructureSection load='4u47' size='340' side='right'caption='[[4u47]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4u47]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U47 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4U47 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4u47]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U47 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4U47 FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Olieric, V]]		[[Category: Olieric, V]]
	[[Category: Peng, G]]		[[Category: Peng, G]]

OCA at 11:53, 14 July 2016

OCA — Thu, 14 Jul 2016 11:53:21 GMT

←Older revision		Revision as of 11:53, 14 July 2016
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u47 OCA], [http://pdbe.org/4u47 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4u47 RCSB], [http://www.ebi.ac.uk/pdbsum/4u47 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4u47 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u47 OCA], [http://pdbe.org/4u47 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4u47 RCSB], [http://www.ebi.ac.uk/pdbsum/4u47 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4u47 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Due to the polyanionic nature of RNA, the principles of charge neutralization and electrostatic condensation require that cations help to overcome the repulsive forces in order for RNA to adopt a three-dimensional structure. A precise structural knowledge of RNA-metal ion interactions is crucial to understand the mechanism of metal ions in the catalytic or regulatory activity of RNA. We solved the crystal structure of an octameric RNA duplex in the presence of the di- and trivalent metal ions Ca(2+), Mn(2+), Co(2+), Cu(2+), Sr(2+), and Tb(3+). The detailed investigation reveals a unique innersphere interaction to uracil and extends the knowledge of the influence of metal ions for conformational changes in RNA structure. Furthermore, we could demonstrate that an accurate localization of the metal ions in the X-ray structures require the consideration of several crystallographic and geometrical parameters as well as the anomalous difference map.
		+
		+	The X-ray Structures of Six Octameric RNA Duplexes in the Presence of Different Di- and Trivalent Cations.,Schaffer MF, Peng G, Spingler B, Schnabl J, Wang M, Olieric V, Sigel RK Int J Mol Sci. 2016 Jun 27;17(7). pii: E988. doi: 10.3390/ijms17070988. PMID:27355942<ref>PMID:27355942</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 4u47" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 03:10, 13 July 2016

OCA — Wed, 13 Jul 2016 03:10:34 GMT

←Older revision		Revision as of 03:10, 13 July 2016
Line 1:		Line 1:
		+
	==Octameric RNA duplex soaked in terbium(III)chloride==		==Octameric RNA duplex soaked in terbium(III)chloride==
	<StructureSection load='4u47' size='340' side='right' caption='[[4u47]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='4u47' size='340' side='right' caption='[[4u47]], [[Resolution\|resolution]] 1.95Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TB:TERBIUM(III)+ION'>TB</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TB:TERBIUM(III)+ION'>TB</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4u3l\|4u3l]], [[4u3r\|4u3r]], [[4u3o\|4u3o]], [[4u3p\|4u3p]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4u3l\|4u3l]], [[4u3r\|4u3r]], [[4u3o\|4u3o]], [[4u3p\|4u3p]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u47 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4u47 RCSB], [http://www.ebi.ac.uk/pdbsum/4u47 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u47 OCA], [http://pdbe.org/4u47 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4u47 RCSB], [http://www.ebi.ac.uk/pdbsum/4u47 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4u47 ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA at 20:10, 5 August 2015

OCA — Wed, 05 Aug 2015 20:10:24 GMT

←Older revision		Revision as of 20:10, 5 August 2015
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-	'''~~Unreleased structure~~'''	+	==Octameric RNA duplex soaked in terbium(III)chloride==
-		+	<StructureSection load='4u47' size='340' side='right' caption='[[4u47]], [[Resolution\|resolution]] 1.95Å' scene=''>
-	~~The entry~~ 4u47 is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4u47]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U47 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4U47 FirstGlance]. <br>
-	~~Authors~~: ~~Schaffer, M~~.F.~~, Spingler, B~~.~~, Schnabl, J~~.~~, Peng, G~~.~~, Olieric, V~~.~~, Sigel, R~~.K.O.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TB:TERBIUM(III)+ION'>TB</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4u3l\|4u3l]], [[4u3r\|4u3r]], [[4u3o\|4u3o]], [[4u3p\|4u3p]]</td></tr>
-	~~Description~~: ~~Octameric RNA duplex soaked in terbium~~(III)~~chloride~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u47 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4u47 RCSB], [http://www.ebi.ac.uk/pdbsum/4u47 PDBsum]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[~~Category: Sigel, R.K.O~~]]	+	__TOC__
-	[[~~Category: Schaffer, M.F~~]]	+	</StructureSection>
-	[[~~Category: Peng~~, G]]	+
-	[[~~Category~~: ~~Spingler~~, B]]	+
	[[Category: Olieric, V]]		[[Category: Olieric, V]]
		+	[[Category: Peng, G]]
		+	[[Category: Schaffer, M F]]
	[[Category: Schnabl, J]]		[[Category: Schnabl, J]]
		+	[[Category: Sigel, R K.O]]
		+	[[Category: Spingler, B]]
		+	[[Category: Di- and trivalent metal ion]]
		+	[[Category: Duplex]]
		+	[[Category: Rna]]

OCA at 18:07, 24 December 2014

OCA — Wed, 24 Dec 2014 18:07:46 GMT

←Older revision		Revision as of 18:07, 24 December 2014
Line 6:		Line 6:

	Description: Octameric RNA duplex soaked in terbium(III)chloride		Description: Octameric RNA duplex soaked in terbium(III)chloride
		+	[[Category: Unreleased Structures]]
		+	[[Category: Sigel, R.K.O]]
		+	[[Category: Schaffer, M.F]]
		+	[[Category: Peng, G]]
		+	[[Category: Spingler, B]]
		+	[[Category: Olieric, V]]
		+	[[Category: Schnabl, J]]

OCA at 08:46, 24 September 2014

OCA — Wed, 24 Sep 2014 08:46:29 GMT

←Older revision		Revision as of 08:46, 24 September 2014
Line 3:		Line 3:
	The entry 4u47 is ON HOLD until Paper Publication		The entry 4u47 is ON HOLD until Paper Publication

-	Authors: Schaffer, M.F., Spingler, B., Schnabl, J., Peng, G., Olieric, V., Sigel, R.K.O	+	Authors: Schaffer, M.F., Spingler, B., Schnabl, J., Peng, G., Olieric, V., Sigel, R.K.O.

	Description: Octameric RNA duplex soaked in terbium(III)chloride		Description: Octameric RNA duplex soaked in terbium(III)chloride

OCA: Protected "4u47" [edit=sysop:move=sysop]

OCA — Wed, 30 Jul 2014 07:16:00 GMT

Protected "4u47" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:16, 30 July 2014

OCA: New page: '''Unreleased structure''' The entry 4u47 is ON HOLD until Paper Publication Authors: Schaffer, M.F., Spingler, B., Schnabl, J., Peng, G., Olieric, V., Sigel, R.K.O Description: Octame...

OCA — Wed, 30 Jul 2014 07:16:00 GMT

New page: '''Unreleased structure''' The entry 4u47 is ON HOLD until Paper Publication Authors: Schaffer, M.F., Spingler, B., Schnabl, J., Peng, G., Olieric, V., Sigel, R.K.O Description: Octame...

New page

'''Unreleased structure'''

The entry 4u47 is ON HOLD until Paper Publication

Authors: Schaffer, M.F., Spingler, B., Schnabl, J., Peng, G., Olieric, V., Sigel, R.K.O

Description: Octameric RNA duplex soaked in terbium(III)chloride