4ud1 - Revision history

OCA at 12:28, 20 December 2023

OCA — Wed, 20 Dec 2023 12:28:24 GMT

←Older revision		Revision as of 12:28, 20 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ud1]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Middle_East_respiratory_syndrome-related_coronavirus Middle East respiratory syndrome-related coronavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UD1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UD1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ud1]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Middle_East_respiratory_syndrome-related_coronavirus Middle East respiratory syndrome-related coronavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UD1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UD1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.48Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ud1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ud1 OCA], [https://pdbe.org/4ud1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ud1 RCSB], [https://www.ebi.ac.uk/pdbsum/4ud1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ud1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ud1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ud1 OCA], [https://pdbe.org/4ud1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ud1 RCSB], [https://www.ebi.ac.uk/pdbsum/4ud1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ud1 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:17, 22 March 2023

OCA — Wed, 22 Mar 2023 08:17:37 GMT

←Older revision		Revision as of 08:17, 22 March 2023
Line 3:		Line 3:
	<StructureSection load='4ud1' size='340' side='right'caption='[[4ud1]], [[Resolution\|resolution]] 2.48Å' scene=''>		<StructureSection load='4ud1' size='340' side='right'caption='[[4ud1]], [[Resolution\|resolution]] 2.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ud1]] is a 5 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Mers Mers~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UD1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4UD1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ud1]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Middle_East_respiratory_syndrome-related_coronavirus Middle East respiratory syndrome-related coronavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UD1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UD1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ud1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ud1 OCA], [~~http~~://pdbe.org/4ud1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ud1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ud1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ud1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ud1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ud1 OCA], [https://pdbe.org/4ud1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ud1 RCSB], [https://www.ebi.ac.uk/pdbsum/4ud1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ud1 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/T2B9R0_MERS T2B9R0_MERS]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Mers~~]]	+	[[Category: Middle East respiratory syndrome-related coronavirus]]
-	[[Category: Canard, B]]	+	[[Category: Canard B]]
-	[[Category: Coutard, B]]	+	[[Category: Coutard B]]
-	[[Category: Ferron, F]]	+	[[Category: Ferron F]]
-	[[Category: Lichiere, J]]	+	[[Category: Lichiere J]]
-	[[Category: Papageorgiou, N]]	+	[[Category: Papageorgiou N]]
-	~~[[Category: Rna binding domain]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 09:03, 21 May 2019

OCA — Tue, 21 May 2019 09:03:30 GMT

←Older revision		Revision as of 09:03, 21 May 2019
Line 1:		Line 1:

	==Structure of the N Terminal domain of the MERS CoV nucleocapsid==		==Structure of the N Terminal domain of the MERS CoV nucleocapsid==
-	<StructureSection load='4ud1' size='340' side='right' caption='[[4ud1]], [[Resolution\|resolution]] 2.48Å' scene=''>	+	<StructureSection load='4ud1' size='340' side='right'caption='[[4ud1]], [[Resolution\|resolution]] 2.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ud1]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UD1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UD1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ud1]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Mers Mers]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UD1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UD1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ud1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ud1 OCA], [http://pdbe.org/4ud1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ud1 RCSB], [http://www.ebi.ac.uk/pdbsum/4ud1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ud1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ud1 OCA], [http://pdbe.org/4ud1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ud1 RCSB], [http://www.ebi.ac.uk/pdbsum/4ud1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ud1 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Mers]]
	[[Category: Canard, B]]		[[Category: Canard, B]]
	[[Category: Coutard, B]]		[[Category: Coutard, B]]

OCA at 06:46, 2 March 2016

OCA — Wed, 02 Mar 2016 06:46:35 GMT

←Older revision		Revision as of 06:46, 2 March 2016
Line 1:		Line 1:
		+
	==Structure of the N Terminal domain of the MERS CoV nucleocapsid==		==Structure of the N Terminal domain of the MERS CoV nucleocapsid==
	<StructureSection load='4ud1' size='340' side='right' caption='[[4ud1]], [[Resolution\|resolution]] 2.48Å' scene=''>		<StructureSection load='4ud1' size='340' side='right' caption='[[4ud1]], [[Resolution\|resolution]] 2.48Å' scene=''>
Line 6:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ud1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ud1 OCA], [http://pdbe.org/4ud1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ud1 RCSB], [http://www.ebi.ac.uk/pdbsum/4ud1 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ud1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ud1 OCA], [http://pdbe.org/4ud1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ud1 RCSB], [http://www.ebi.ac.uk/pdbsum/4ud1 PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The N protein of coronaviruses is a multifunctional protein that is organized into several domains. The N-terminal part is composed of an intrinsically disordered region (IDR) followed by a structured domain called the N-terminal domain (NTD). In this study, the structure determination of the N-terminal region of the MERS-CoV N protein via X-ray diffraction measurements is reported at a resolution of 2.4 A. Since the first 30 amino acids were not resolved by X-ray diffraction, the structural study was completed by a SAXS experiment to propose a structural model including the IDR. This model presents the N-terminal region of the MERS-CoV as a monomer that displays structural features in common with other coronavirus NTDs.
		+
		+	Structural characterization of the N-terminal part of the MERS-CoV nucleocapsid by X-ray diffraction and small-angle X-ray scattering.,Papageorgiou N, Lichiere J, Baklouti A, Ferron F, Sevajol M, Canard B, Coutard B Acta Crystallogr D Struct Biol. 2016 Feb;72(Pt 2):192-202. doi:, 10.1107/S2059798315024328. Epub 2016 Jan 22. PMID:26894667<ref>PMID:26894667</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 4ud1" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 16:15, 2 December 2015

OCA — Wed, 02 Dec 2015 16:15:08 GMT

←Older revision		Revision as of 16:15, 2 December 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Structure of the N Terminal domain of the MERS CoV nucleocapsid==
-		+	<StructureSection load='4ud1' size='340' side='right' caption='[[4ud1]], [[Resolution\|resolution]] 2.48Å' scene=''>
-	~~The entry~~ 4ud1 is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4ud1]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UD1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UD1 FirstGlance]. <br>
-	~~Authors~~: ~~Papageorgiou, N~~.~~, Lichiere, J~~.~~, Ferron, F~~.~~, Canard, B~~.~~, Coutard, B~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ud1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ud1 OCA], [http://pdbe.org/4ud1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ud1 RCSB], [http://www.ebi.ac.uk/pdbsum/4ud1 PDBsum]</span></td></tr>
-	~~Description: Structure of the N Terminal domain of the MERS CoV nucleocapsid~~	+	</table>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	__TOC__
-	[[~~Category~~: ~~Coutard~~, B]]	+	</StructureSection>
	[[Category: Canard, B]]		[[Category: Canard, B]]
-	[[Category: ~~Lichiere~~, J]]	+	[[Category: Coutard, B]]
	[[Category: Ferron, F]]		[[Category: Ferron, F]]
		+	[[Category: Lichiere, J]]
	[[Category: Papageorgiou, N]]		[[Category: Papageorgiou, N]]
		+	[[Category: Rna binding domain]]
		+	[[Category: Viral protein]]

OCA at 18:24, 24 December 2014

OCA — Wed, 24 Dec 2014 18:24:01 GMT

←Older revision		Revision as of 18:24, 24 December 2014
Line 6:		Line 6:

	Description: Structure of the N Terminal domain of the MERS CoV nucleocapsid		Description: Structure of the N Terminal domain of the MERS CoV nucleocapsid
		+	[[Category: Unreleased Structures]]
		+	[[Category: Coutard, B]]
		+	[[Category: Canard, B]]
		+	[[Category: Lichiere, J]]
		+	[[Category: Ferron, F]]
		+	[[Category: Papageorgiou, N]]

OCA at 11:20, 17 December 2014

OCA — Wed, 17 Dec 2014 11:20:19 GMT

←Older revision		Revision as of 11:20, 17 December 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4ud1 is ON HOLD until ~~sometime in the future~~	+	The entry 4ud1 is ON HOLD until Paper Publication

	Authors: Papageorgiou, N., Lichiere, J., Ferron, F., Canard, B., Coutard, B.		Authors: Papageorgiou, N., Lichiere, J., Ferron, F., Canard, B., Coutard, B.

	Description: Structure of the N Terminal domain of the MERS CoV nucleocapsid		Description: Structure of the N Terminal domain of the MERS CoV nucleocapsid

OCA: Protected "4ud1" [edit=sysop:move=sysop]

OCA — Wed, 10 Dec 2014 13:47:52 GMT

Protected "4ud1" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:47, 10 December 2014

OCA: New page: '''Unreleased structure''' The entry 4ud1 is ON HOLD until sometime in the future Authors: Papageorgiou, N., Lichiere, J., Ferron, F., Canard, B., Coutard, B. Description: Structure of...

OCA — Wed, 10 Dec 2014 13:47:50 GMT

New page: '''Unreleased structure''' The entry 4ud1 is ON HOLD until sometime in the future Authors: Papageorgiou, N., Lichiere, J., Ferron, F., Canard, B., Coutard, B. Description: Structure of...

New page

'''Unreleased structure'''

The entry 4ud1 is ON HOLD until sometime in the future

Authors: Papageorgiou, N., Lichiere, J., Ferron, F., Canard, B., Coutard, B.

Description: Structure of the N Terminal domain of the MERS CoV nucleocapsid