4umk - Revision history

OCA at 11:21, 9 May 2024

OCA — Thu, 09 May 2024 11:21:35 GMT

←Older revision		Revision as of 11:21, 9 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] and [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UMK FirstGlance]. <br>		<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] and [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UMK FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.096Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [https://pdbe.org/4umk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [https://www.ebi.ac.uk/pdbsum/4umk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4umk ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [https://pdbe.org/4umk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [https://www.ebi.ac.uk/pdbsum/4umk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4umk ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:29, 22 March 2023

OCA — Wed, 22 Mar 2023 08:29:17 GMT

←Older revision		Revision as of 08:29, 22 March 2023
Line 3:		Line 3:
	<StructureSection load='4umk' size='340' side='right'caption='[[4umk]], [[Resolution\|resolution]] 3.10Å' scene=''>		<StructureSection load='4umk' size='340' side='right'caption='[[4umk]], [[Resolution\|resolution]] 3.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Campylobacter_pylori Campylobacter~~ pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=4UMK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] and [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UMK FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [~~http~~://pdbe.org/4umk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4umk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4umk ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [https://pdbe.org/4umk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [https://www.ebi.ac.uk/pdbsum/4umk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4umk ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/PARB_HELPY PARB_HELPY]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Campylobacter~~ pylori]]	+	[[Category: Bacillus subtilis]]
		+	[[Category: Helicobacter pylori 26695]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chen~~, B W~~]]	+	[[Category: Chen BW]]
-	[[Category: Chu~~, C H~~]]	+	[[Category: Chu CH]]
-	[[Category: Hsiao~~, C D~~]]	+	[[Category: Hsiao CD]]
-	[[Category: Hsu~~, C E~~]]	+	[[Category: Hsu CE]]
-	[[Category: Sun~~, Y J~~]]	+	[[Category: Sun YJ]]
-	[[Category: Tung~~, J Y]]~~	+	[[Category: Tung JY]]
-	~~[[Category: Dna binding protein-dna complex~~]]	+

OCA at 07:03, 3 June 2020

OCA — Wed, 03 Jun 2020 07:03:09 GMT

←Older revision		Revision as of 07:03, 3 June 2020
Line 1:		Line 1:

	==The complex of Spo0J and parS DNA in chromosomal partition system==		==The complex of Spo0J and parS DNA in chromosomal partition system==
-	<StructureSection load='4umk' size='340' side='right' caption='[[4umk]], [[Resolution\|resolution]] 3.10Å' scene=''>	+	<StructureSection load='4umk' size='340' side='right'caption='[[4umk]], [[Resolution\|resolution]] 3.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4UMK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=4UMK FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [http://pdbe.org/4umk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [http://www.ebi.ac.uk/pdbsum/4umk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4umk ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [http://pdbe.org/4umk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [http://www.ebi.ac.uk/pdbsum/4umk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4umk ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Campylobacter pylori]]		[[Category: Campylobacter pylori]]
		+	[[Category: Large Structures]]
	[[Category: Chen, B W]]		[[Category: Chen, B W]]
	[[Category: Chu, C H]]		[[Category: Chu, C H]]

OCA at 07:44, 29 August 2018

OCA — Wed, 29 Aug 2018 07:44:41 GMT

←Older revision		Revision as of 07:44, 29 August 2018
Line 3:		Line 3:
	<StructureSection load='4umk' size='340' side='right' caption='[[4umk]], [[Resolution\|resolution]] 3.10Å' scene=''>		<StructureSection load='4umk' size='340' side='right' caption='[[4umk]], [[Resolution\|resolution]] 3.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMK FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [http://pdbe.org/4umk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [http://www.ebi.ac.uk/pdbsum/4umk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4umk ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [http://pdbe.org/4umk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [http://www.ebi.ac.uk/pdbsum/4umk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4umk ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Spo0J (stage 0 sporulation protein J, a member of the ParB superfamily) is an essential component of the ParABS (partition system of ParA, ParB, and parS)-related bacterial chromosome segregation system. ParB (partition protein B) and its regulatory protein, ParA, act cooperatively through parS (partition S) DNA to facilitate chromosome segregation. ParB binds to chromosomal DNA at specific parS sites as well as the neighboring nonspecific DNA sites. Various ParB molecules can associate together and spread along the chromosomal DNA. ParB oligomer and parS DNA interact together to form a high-order nucleoprotein that is required for the loading of the structural maintenance of chromosomes proteins onto the chromosome for chromosomal DNA condensation. In this report, we characterized the binding of parS and Spo0J from Helicobacter pylori (HpSpo0J) and solved the crystal structure of the C-terminal domain truncated protein (Ct-HpSpo0J)-parS complex. Ct-HpSpo0J folds into an elongated structure that includes a flexible N-terminal domain for protein-protein interaction and a conserved DNA-binding domain for parS binding. Two Ct-HpSpo0J molecules bind with one parS. Ct-HpSpo0J interacts vertically and horizontally with its neighbors through the N-terminal domain to form an oligomer. These adjacent and transverse interactions are accomplished via a highly conserved arginine patch: RRLR. These interactions might be needed for molecular assembly of a high-order nucleoprotein complex and for ParB spreading. A structural model for ParB spreading and chromosomal DNA condensation that lead to chromosome segregation is proposed.
		+
		+	Insights into ParB spreading from the complex structure of Spo0J and parS.,Chen BW, Lin MH, Chu CH, Hsu CE, Sun YJ Proc Natl Acad Sci U S A. 2015 May 26;112(21):6613-8. doi:, 10.1073/pnas.1421927112. Epub 2015 May 11. PMID:25964325<ref>PMID:25964325</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 4umk" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Campylobacter pylori]]
	[[Category: Chen, B W]]		[[Category: Chen, B W]]
	[[Category: Chu, C H]]		[[Category: Chu, C H]]

OCA at 01:44, 10 March 2017

OCA — Fri, 10 Mar 2017 01:44:40 GMT

←Older revision		Revision as of 01:44, 10 March 2017
Line 1:		Line 1:
		+
	==The complex of Spo0J and parS DNA in chromosomal partition system==		==The complex of Spo0J and parS DNA in chromosomal partition system==
	<StructureSection load='4umk' size='340' side='right' caption='[[4umk]], [[Resolution\|resolution]] 3.10Å' scene=''>		<StructureSection load='4umk' size='340' side='right' caption='[[4umk]], [[Resolution\|resolution]] 3.10Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMK FirstGlance]. <br>		<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMK FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [http://www.ebi.ac.uk/pdbsum/4umk PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [http://pdbe.org/4umk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [http://www.ebi.ac.uk/pdbsum/4umk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4umk ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA at 12:24, 13 May 2015

OCA — Wed, 13 May 2015 12:24:12 GMT

←Older revision		Revision as of 12:24, 13 May 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==The complex of Spo0J and parS DNA in chromosomal partition system==
-		+	<StructureSection load='4umk' size='340' side='right' caption='[[4umk]], [[Resolution\|resolution]] 3.10Å' scene=''>
-	~~The entry~~ 4umk is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4umk]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UMK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UMK FirstGlance]. <br>
-	~~Authors~~: ~~Chen, B~~.W.~~, Chu, C~~.H., ~~Tung, J~~.Y., ~~Hsu, C~~.E.~~, Hsiao, C.D~~., ~~Sun, Y~~.J.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4umk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4umk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4umk RCSB], [http://www.ebi.ac.uk/pdbsum/4umk PDBsum]</span></td></tr>
-	~~Description: The complex of Spo0J and parS DNA in chromosomal partition system~~	+	</table>
-	[[Category: ~~Unreleased Structures~~]]	+	__TOC__
-	[[Category: ~~Chen~~, ~~B.W~~]]	+	</StructureSection>
-	[[Category: ~~Chu~~, C.H]]	+	[[Category: Chen, B W]]
-	[[Category: Hsu, C.E]]	+	[[Category: Chu, C H]]
-	[[Category: ~~Tung~~, J.Y]]	+	[[Category: Hsiao, C D]]
-	[[Category: ~~Hsiao~~, ~~C.D~~]]	+	[[Category: Hsu, C E]]
-	[[Category: ~~Sun, Y.J~~]]	+	[[Category: Sun, Y J]]
		+	[[Category: Tung, J Y]]
		+	[[Category: Dna binding protein-dna complex]]

OCA at 18:31, 24 December 2014

OCA — Wed, 24 Dec 2014 18:31:59 GMT

←Older revision		Revision as of 18:31, 24 December 2014
Line 6:		Line 6:

	Description: The complex of Spo0J and parS DNA in chromosomal partition system		Description: The complex of Spo0J and parS DNA in chromosomal partition system
		+	[[Category: Unreleased Structures]]
		+	[[Category: Chen, B.W]]
		+	[[Category: Chu, C.H]]
		+	[[Category: Hsu, C.E]]
		+	[[Category: Tung, J.Y]]
		+	[[Category: Hsiao, C.D]]
		+	[[Category: Sun, Y.J]]

OCA: Protected "4umk" [edit=sysop:move=sysop]

OCA — Wed, 28 May 2014 08:36:55 GMT

Protected "4umk" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:36, 28 May 2014

OCA: New page: '''Unreleased structure''' The entry 4umk is ON HOLD until Paper Publication Authors: Chen, B.W., Chu, C.H., Tung, J.Y., Hsu, C.E., Hsiao, C.D., Sun, Y.J. Description: The complex of S...

OCA — Wed, 28 May 2014 08:36:54 GMT

New page: '''Unreleased structure''' The entry 4umk is ON HOLD until Paper Publication Authors: Chen, B.W., Chu, C.H., Tung, J.Y., Hsu, C.E., Hsiao, C.D., Sun, Y.J. Description: The complex of S...

New page

'''Unreleased structure'''

The entry 4umk is ON HOLD until Paper Publication

Authors: Chen, B.W., Chu, C.H., Tung, J.Y., Hsu, C.E., Hsiao, C.D., Sun, Y.J.

Description: The complex of Spo0J and parS DNA in chromosomal partition system