4ur4 - Revision history

OCA at 10:33, 10 January 2024

OCA — Wed, 10 Jan 2024 10:33:34 GMT

←Older revision		Revision as of 10:33, 10 January 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zoarces_viviparus Zoarces viviparus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zoarces_viviparus Zoarces viviparus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [https://pdbe.org/4ur4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [https://www.ebi.ac.uk/pdbsum/4ur4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ur4 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.45Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [https://pdbe.org/4ur4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [https://www.ebi.ac.uk/pdbsum/4ur4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ur4 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 07:33, 29 March 2023

OCA — Wed, 29 Mar 2023 07:33:35 GMT

←Older revision		Revision as of 07:33, 29 March 2023
Line 3:		Line 3:
	<StructureSection load='4ur4' size='340' side='right'caption='[[4ur4]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='4ur4' size='340' side='right'caption='[[4ur4]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Blennius_viviparus Blennius~~ viviparus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zoarces_viviparus Zoarces viviparus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>
-	</td></tr>~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ur6\|4ur6]]</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [https://pdbe.org/4ur4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [https://www.ebi.ac.uk/pdbsum/4ur4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ur4 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [~~http~~://pdbe.org/4ur4 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ur4 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ur4 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A3EYI7_ZOAVI A3EYI7_ZOAVI]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Blennius viviparus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Leggio, L Lo]]	+	[[Category: Zoarces viviparus]]
-	[[Category: Poulsen, J ~~C.N~~]]	+	[[Category: Lo Leggio L]]
-	[[Category: Ramloev, H]]	+	[[Category: Poulsen J-CN]]
-	[[Category: Wilkens, C]]	+	[[Category: Ramloev H]]
-	~~[[Category: Antifreeze protein]]~~	+	[[Category: Wilkens C]]
-	~~[[Category: Fish]]~~	+
-	~~[[Category: Qae1 isoform]]~~	+
-	~~[[Category: Type iii~~]]	+

OCA at 11:11, 26 February 2020

OCA — Wed, 26 Feb 2020 11:11:32 GMT

←Older revision		Revision as of 11:11, 26 February 2020
Line 1:		Line 1:

	==Structure of the type III fish antifreeze protein from Zoarces viviparus ZvAFP13==		==Structure of the type III fish antifreeze protein from Zoarces viviparus ZvAFP13==
-	<StructureSection load='4ur4' size='340' side='right' caption='[[4ur4]], [[Resolution\|resolution]] 1.45Å' scene=''>	+	<StructureSection load='4ur4' size='340' side='right'caption='[[4ur4]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Blennius_viviparus Blennius viviparus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Blennius_viviparus Blennius viviparus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>
Line 16:		Line 16:
	</div>		</div>
	<div class="pdbe-citations 4ur4" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4ur4" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Antifreeze protein 3D structures\|Antifreeze protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 21:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Blennius viviparus]]		[[Category: Blennius viviparus]]
		+	[[Category: Large Structures]]
	[[Category: Leggio, L Lo]]		[[Category: Leggio, L Lo]]
	[[Category: Poulsen, J C.N]]		[[Category: Poulsen, J C.N]]

OCA at 07:55, 17 January 2018

OCA — Wed, 17 Jan 2018 07:55:11 GMT

←Older revision		Revision as of 07:55, 17 January 2018
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	<StructureSection load='4ur4' size='340' side='right' caption='[[4ur4]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='4ur4' size='340' side='right' caption='[[4ur4]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Blennius_viviparus Blennius viviparus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ur6\|4ur6]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ur6\|4ur6]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [http://pdbe.org/4ur4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [http://www.ebi.ac.uk/pdbsum/4ur4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ur4 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [http://pdbe.org/4ur4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [http://www.ebi.ac.uk/pdbsum/4ur4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ur4 ProSAT]</span></td></tr>
Line 16:		Line 16:
	</div>		</div>
	<div class="pdbe-citations 4ur4" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4ur4" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Antifreeze protein\|Antifreeze protein]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Blennius viviparus]]
	[[Category: Leggio, L Lo]]		[[Category: Leggio, L Lo]]
	[[Category: Poulsen, J C.N]]		[[Category: Poulsen, J C.N]]

OCA at 21:18, 11 August 2016

OCA — Thu, 11 Aug 2016 21:18:40 GMT

←Older revision		Revision as of 21:18, 11 August 2016
Line 1:		Line 1:
		+
	==Structure of the type III fish antifreeze protein from Zoarces viviparus ZvAFP13==		==Structure of the type III fish antifreeze protein from Zoarces viviparus ZvAFP13==
	<StructureSection load='4ur4' size='340' side='right' caption='[[4ur4]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='4ur4' size='340' side='right' caption='[[4ur4]], [[Resolution\|resolution]] 1.45Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ur6\|4ur6]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ur6\|4ur6]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [http://www.ebi.ac.uk/pdbsum/4ur4 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [http://pdbe.org/4ur4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [http://www.ebi.ac.uk/pdbsum/4ur4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ur4 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4ur4" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Antifreeze protein\|Antifreeze protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:58, 5 January 2015

OCA — Mon, 05 Jan 2015 14:58:52 GMT

←Older revision		Revision as of 14:58, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ur6\|4ur6]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ur6\|4ur6]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [http://www.ebi.ac.uk/pdbsum/4ur4 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [http://www.ebi.ac.uk/pdbsum/4ur4 PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 18:		Line 18:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Leggio, L Lo.]]	+	[[Category: Leggio, L Lo]]
-	[[Category: Poulsen, J C.N.]]	+	[[Category: Poulsen, J C.N]]
-	[[Category: Ramloev, H.]]	+	[[Category: Ramloev, H]]
-	[[Category: Wilkens, C.]]	+	[[Category: Wilkens, C]]
	[[Category: Antifreeze protein]]		[[Category: Antifreeze protein]]
	[[Category: Fish]]		[[Category: Fish]]
	[[Category: Qae1 isoform]]		[[Category: Qae1 isoform]]
	[[Category: Type iii]]		[[Category: Type iii]]

OCA at 07:57, 23 July 2014

OCA — Wed, 23 Jul 2014 07:57:01 GMT

←Older revision		Revision as of 07:57, 23 July 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Structure of the type III fish antifreeze protein from Zoarces viviparus ZvAFP13==
		+	<StructureSection load='4ur4' size='340' side='right' caption='[[4ur4]], [[Resolution\|resolution]] 1.45Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4ur4]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UR4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UR4 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ur6\|4ur6]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ur4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ur4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ur4 RCSB], [http://www.ebi.ac.uk/pdbsum/4ur4 PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Antifreeze proteins (AFPs) are essential components of many organisms adaptation to cold temperatures. Fish type III AFPs are divided into two groups, SP isoforms being much less active than QAE1 isoforms. Two type III AFPs from Zoarces viviparus, a QAE1 (ZvAFP13) and an SP (ZvAFP6) isoform, are here characterized and their crystal structures determined. We conclude that the higher activity of the QAE1 isoforms cannot be attributed to single residues, but rather a combination of structural effects. Furthermore both ZvAFP6 and ZvAFP13 crystal structures have water molecules around T18 equivalent to the tetrahedral-like waters previously identified in a neutron crystal structure. Interestingly, ZvAFP6 forms dimers in the crystal, with a significant dimer interface. The presence of ZvAFP6 dimers was confirmed in solution by native electrophoresis and gel filtration. To our knowledge this is the first report of dimerization of AFP type III proteins.

-	~~The entry 4ur4 is ON HOLD~~	+	Purification, crystal structure determination and functional characterization of type III antifreeze proteins from the European eelpout Zoarces viviparus.,Wilkens C, Poulsen JC, Ramlov H, Leggio LL Cryobiology. 2014 Jul 12. pii: S0011-2240(14)00133-3. doi:, 10.1016/j.cryobiol.2014.07.003. PMID:25025819<ref>PMID:25025819</ref>

-	~~Authors: Wilkens~~, C., Poulsen, J.-C.N., Ramloev, H., ~~Lo Leggio, L~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description~~: ~~Structure of the type III fish antifreeze~~ protein ~~from Zoarces viviparus ZvAFP13~~	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Leggio, L Lo.]]
		+	[[Category: Poulsen, J C.N.]]
		+	[[Category: Ramloev, H.]]
		+	[[Category: Wilkens, C.]]
		+	[[Category: Antifreeze protein]]
		+	[[Category: Fish]]
		+	[[Category: Qae1 isoform]]
		+	[[Category: Type iii]]

OCA: Protected "4ur4" [edit=sysop:move=sysop]

OCA — Wed, 02 Jul 2014 07:38:30 GMT

Protected "4ur4" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:38, 2 July 2014

OCA: New page: '''Unreleased structure''' The entry 4ur4 is ON HOLD Authors: Wilkens, C., Poulsen, J.-C.N., Ramloev, H., Lo Leggio, L. Description: Structure of the type III fish antifreeze protein f...

OCA — Wed, 02 Jul 2014 07:38:29 GMT

New page: '''Unreleased structure''' The entry 4ur4 is ON HOLD Authors: Wilkens, C., Poulsen, J.-C.N., Ramloev, H., Lo Leggio, L. Description: Structure of the type III fish antifreeze protein f...

New page

'''Unreleased structure'''

The entry 4ur4 is ON HOLD

Authors: Wilkens, C., Poulsen, J.-C.N., Ramloev, H., Lo Leggio, L.

Description: Structure of the type III fish antifreeze protein from Zoarces viviparus ZvAFP13