4uxm - Revision history

OCA at 12:58, 1 March 2024

OCA — Fri, 01 Mar 2024 12:58:17 GMT

←Older revision		Revision as of 12:58, 1 March 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4uxm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Struthio_camelus Struthio camelus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UXM FirstGlance]. <br>		<table><tr><td colspan='2'>[[4uxm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Struthio_camelus Struthio camelus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UXM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BE7:(4-CARBOXYPHENYL)(CHLORO)MERCURY'>BE7</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BE7:(4-CARBOXYPHENYL)(CHLORO)MERCURY'>BE7</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4uxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uxm OCA], [https://pdbe.org/4uxm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4uxm RCSB], [https://www.ebi.ac.uk/pdbsum/4uxm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4uxm ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4uxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uxm OCA], [https://pdbe.org/4uxm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4uxm RCSB], [https://www.ebi.ac.uk/pdbsum/4uxm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4uxm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/SCAL1_STRCA SCAL1_STRCA]		[https://www.uniprot.org/uniprot/SCAL1_STRCA SCAL1_STRCA]
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Biomineralization is the process by which living organisms produce minerals. One remarkable example is the formation of eggshells in birds. Struthiocalcins present in the ostrich (Struthio camellus) eggshell matrix act as biosensors of calcite growth during eggshell formation. Here, the crystal structure of struthiocalcin-1 (SCA-1) is reported in two different crystal forms. The structure is a compact single domain with an alpha/beta fold characteristic of the C-type lectin family. In contrast to the related avian ovocleidin OC17, the electrostatic potential on the molecular surface is dominated by an acidic patch. Scanning electron microscopy combined with Raman spectroscopy indicates that these intramineral proteins (SCA-1 and SCA-2) induce calcium carbonate precipitation, leading to the formation of a stable form of calcite in the mature eggshell. Finally, the implications of these two intramineral proteins SCA-1 and SCA-2 in the nucleation of calcite during the formation of eggshells in ratite birds are discussed.
-
-	Structure of struthiocalcin-1, an intramineral protein from Struthio camelus eggshell, in two crystal forms.,Ruiz-Arellano RR, Medrano FJ, Moreno A, Romero A Acta Crystallogr D Biol Crystallogr. 2015 Apr;71(Pt 4):809-18. doi:, 10.1107/S139900471500125X. Epub 2015 Mar 26. PMID:25849392<ref>PMID:25849392</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 4uxm" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 07:49, 29 March 2023

OCA — Wed, 29 Mar 2023 07:49:39 GMT

←Older revision		Revision as of 07:49, 29 March 2023
Line 3:		Line 3:
	<StructureSection load='4uxm' size='340' side='right'caption='[[4uxm]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='4uxm' size='340' side='right'caption='[[4uxm]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4uxm]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Struthio_camelus Struthio camelus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UXM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4UXM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4uxm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Struthio_camelus Struthio camelus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UXM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BE7:(4-CARBOXYPHENYL)(CHLORO)MERCURY'>BE7</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BE7:(4-CARBOXYPHENYL)(CHLORO)MERCURY'>BE7</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4uxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uxm OCA], [~~http~~://pdbe.org/4uxm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4uxm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4uxm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4uxm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4uxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uxm OCA], [https://pdbe.org/4uxm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4uxm RCSB], [https://www.ebi.ac.uk/pdbsum/4uxm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4uxm ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SCAL1_STRCA SCAL1_STRCA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 24:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Struthio camelus]]		[[Category: Struthio camelus]]
-	[[Category: Moreno, A]]	+	[[Category: Moreno A]]
-	[[Category: Romero, A]]	+	[[Category: Romero A]]
-	[[Category: Ruiz-Arellano~~, R R]]~~	+	[[Category: Ruiz-Arellano RR]]
-	~~[[Category: Structural protein~~]]	+

OCA at 10:44, 26 February 2020

OCA — Wed, 26 Feb 2020 10:44:10 GMT

←Older revision		Revision as of 10:44, 26 February 2020
Line 1:		Line 1:

	==Crystal Structure of Struthiocalcin-1, a different crystal form.==		==Crystal Structure of Struthiocalcin-1, a different crystal form.==
-	<StructureSection load='4uxm' size='340' side='right' caption='[[4uxm]], [[Resolution\|resolution]] 1.50Å' scene=''>	+	<StructureSection load='4uxm' size='340' side='right'caption='[[4uxm]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4uxm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Struthio_camelus Struthio camelus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UXM FirstGlance]. <br>		<table><tr><td colspan='2'>[[4uxm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Struthio_camelus Struthio camelus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UXM FirstGlance]. <br>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Struthio camelus]]		[[Category: Struthio camelus]]
	[[Category: Moreno, A]]		[[Category: Moreno, A]]

OCA at 18:35, 1 February 2017

OCA — Wed, 01 Feb 2017 18:35:26 GMT

←Older revision		Revision as of 18:35, 1 February 2017
Line 1:		Line 1:
		+
	==Crystal Structure of Struthiocalcin-1, a different crystal form.==		==Crystal Structure of Struthiocalcin-1, a different crystal form.==
	<StructureSection load='4uxm' size='340' side='right' caption='[[4uxm]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='4uxm' size='340' side='right' caption='[[4uxm]], [[Resolution\|resolution]] 1.50Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[4uxm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Struthio_camelus Struthio camelus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UXM FirstGlance]. <br>		<table><tr><td colspan='2'>[[4uxm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Struthio_camelus Struthio camelus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UXM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BE7:(4-CARBOXYPHENYL)(CHLORO)MERCURY'>BE7</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BE7:(4-CARBOXYPHENYL)(CHLORO)MERCURY'>BE7</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4uxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uxm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4uxm RCSB], [http://www.ebi.ac.uk/pdbsum/4uxm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4uxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uxm OCA], [http://pdbe.org/4uxm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4uxm RCSB], [http://www.ebi.ac.uk/pdbsum/4uxm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4uxm ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4uxm" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:32, 22 April 2015

OCA — Wed, 22 Apr 2015 06:32:07 GMT

←Older revision		Revision as of 06:32, 22 April 2015
Line 6:		Line 6:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4uxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uxm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4uxm RCSB], [http://www.ebi.ac.uk/pdbsum/4uxm PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4uxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uxm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4uxm RCSB], [http://www.ebi.ac.uk/pdbsum/4uxm PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Biomineralization is the process by which living organisms produce minerals. One remarkable example is the formation of eggshells in birds. Struthiocalcins present in the ostrich (Struthio camellus) eggshell matrix act as biosensors of calcite growth during eggshell formation. Here, the crystal structure of struthiocalcin-1 (SCA-1) is reported in two different crystal forms. The structure is a compact single domain with an alpha/beta fold characteristic of the C-type lectin family. In contrast to the related avian ovocleidin OC17, the electrostatic potential on the molecular surface is dominated by an acidic patch. Scanning electron microscopy combined with Raman spectroscopy indicates that these intramineral proteins (SCA-1 and SCA-2) induce calcium carbonate precipitation, leading to the formation of a stable form of calcite in the mature eggshell. Finally, the implications of these two intramineral proteins SCA-1 and SCA-2 in the nucleation of calcite during the formation of eggshells in ratite birds are discussed.
		+
		+	Structure of struthiocalcin-1, an intramineral protein from Struthio camelus eggshell, in two crystal forms.,Ruiz-Arellano RR, Medrano FJ, Moreno A, Romero A Acta Crystallogr D Biol Crystallogr. 2015 Apr;71(Pt 4):809-18. doi:, 10.1107/S139900471500125X. Epub 2015 Mar 26. PMID:25849392<ref>PMID:25849392</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 11:16, 8 April 2015

OCA — Wed, 08 Apr 2015 11:16:46 GMT

←Older revision		Revision as of 11:16, 8 April 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Crystal Structure of Struthiocalcin-1, a different crystal form.==
-		+	<StructureSection load='4uxm' size='340' side='right' caption='[[4uxm]], [[Resolution\|resolution]] 1.50Å' scene=''>
-	~~The entry~~ 4uxm is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4uxm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Struthio_camelus Struthio camelus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UXM FirstGlance]. <br>
-	~~Authors~~: ~~Ruiz~~-~~Arellano, R~~.R.~~, Moreno, A~~.~~, Romero, A~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BE7:(4-CARBOXYPHENYL)(CHLORO)MERCURY'>BE7</scene></td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4uxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uxm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4uxm RCSB], [http://www.ebi.ac.uk/pdbsum/4uxm PDBsum]</span></td></tr>
-	~~Description~~: ~~Crystal Structure of Struthiocalcin~~-1, ~~a different crystal form~~.	+	</table>
-	[~~[Category~~: ~~Unreleased Structures~~]]	+	__TOC__
-	[[Category: ~~Romero, A~~]]	+	</StructureSection>
		+	[[Category: Struthio camelus]]
	[[Category: Moreno, A]]		[[Category: Moreno, A]]
-	[[Category: Ruiz-Arellano, R.R]]	+	[[Category: Romero, A]]
		+	[[Category: Ruiz-Arellano, R R]]
		+	[[Category: Structural protein]]

OCA at 18:51, 24 December 2014

OCA — Wed, 24 Dec 2014 18:51:46 GMT

←Older revision		Revision as of 18:51, 24 December 2014
Line 6:		Line 6:

	Description: Crystal Structure of Struthiocalcin-1, a different crystal form.		Description: Crystal Structure of Struthiocalcin-1, a different crystal form.
		+	[[Category: Unreleased Structures]]
		+	[[Category: Romero, A]]
		+	[[Category: Moreno, A]]
		+	[[Category: Ruiz-Arellano, R.R]]

OCA: Protected "4uxm" [edit=sysop:move=sysop]

OCA — Thu, 04 Sep 2014 04:41:23 GMT

Protected "4uxm" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:41, 4 September 2014

OCA: New page: '''Unreleased structure''' The entry 4uxm is ON HOLD until Paper Publication Authors: Ruiz-Arellano, R.R., Moreno, A., Romero, A. Description: Crystal Structure of Struthiocalcin-1, a ...

OCA — Thu, 04 Sep 2014 04:41:21 GMT

New page: '''Unreleased structure''' The entry 4uxm is ON HOLD until Paper Publication Authors: Ruiz-Arellano, R.R., Moreno, A., Romero, A. Description: Crystal Structure of Struthiocalcin-1, a ...

New page

'''Unreleased structure'''

The entry 4uxm is ON HOLD until Paper Publication

Authors: Ruiz-Arellano, R.R., Moreno, A., Romero, A.

Description: Crystal Structure of Struthiocalcin-1, a different crystal form.