4v33 - Revision history

OCA at 10:39, 10 January 2024

OCA — Wed, 10 Jan 2024 10:39:47 GMT

←Older revision		Revision as of 10:39, 10 January 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4v33]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V33 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V33 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4v33]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V33 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V33 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PXU:2-HYDROXY-L-PROLINE'>PXU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.48Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PXU:2-HYDROXY-L-PROLINE'>PXU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v33 OCA], [https://pdbe.org/4v33 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v33 RCSB], [https://www.ebi.ac.uk/pdbsum/4v33 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v33 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v33 OCA], [https://pdbe.org/4v33 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v33 RCSB], [https://www.ebi.ac.uk/pdbsum/4v33 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v33 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:01, 29 March 2023

OCA — Wed, 29 Mar 2023 08:01:04 GMT

←Older revision		Revision as of 08:01, 29 March 2023
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	<StructureSection load='4v33' size='340' side='right'caption='[[4v33]], [[Resolution\|resolution]] 1.48Å' scene=''>		<StructureSection load='4v33' size='340' side='right'caption='[[4v33]], [[Resolution\|resolution]] 1.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4v33]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_cereus_var._anthracis"_(cohn_1872)_smith_et_al._1946 "bacillus cereus var.~~ anthracis~~" (cohn 1872) smith et al. 1946~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V33 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4V33 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4v33]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V33 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V33 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:~~ZINC+ION~~'>ZN</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PXU:2-HYDROXY-L-PROLINE'>PXU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~PXU~~:~~2-HYDROXY-L-PROLINE~~'>~~PXU~~</scene></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v33 OCA], [https://pdbe.org/4v33 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v33 RCSB], [https://www.ebi.ac.uk/pdbsum/4v33 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v33 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4v33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v33 OCA], [~~http~~://pdbe.org/4v33 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4v33 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4v33 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4v33 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A6L8P8I1_BACAN A0A6L8P8I1_BACAN]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus anthracis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Andreou, A]]	+	[[Category: Andreou A]]
-	[[Category: Bouriotis, V]]	+	[[Category: Bouriotis V]]
-	[[Category: Eliopoulos, E]]	+	[[Category: Eliopoulos E]]
-	[[Category: Giastas, P]]	+	[[Category: Giastas P]]
-	~~[[Category: Fibronectin type iii domain]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 07:54, 23 May 2019

OCA — Thu, 23 May 2019 07:54:20 GMT

←Older revision		Revision as of 07:54, 23 May 2019
Line 1:		Line 1:

	==Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis==		==Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis==
-	<StructureSection load='4v33' size='340' side='right' caption='[[4v33]], [[Resolution\|resolution]] 1.48Å' scene=''>	+	<StructureSection load='4v33' size='340' side='right'caption='[[4v33]], [[Resolution\|resolution]] 1.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4v33]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V33 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V33 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4v33]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_cereus_var._anthracis"_(cohn_1872)_smith_et_al._1946 "bacillus cereus var. anthracis" (cohn 1872) smith et al. 1946]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V33 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V33 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PXU:2-HYDROXY-L-PROLINE'>PXU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PXU:2-HYDROXY-L-PROLINE'>PXU</scene></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Andreou, A]]		[[Category: Andreou, A]]
	[[Category: Bouriotis, V]]		[[Category: Bouriotis, V]]

OCA at 02:02, 11 March 2017

OCA — Sat, 11 Mar 2017 02:02:55 GMT

←Older revision		Revision as of 02:02, 11 March 2017
Line 1:		Line 1:
		+
	==Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis==		==Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis==
	<StructureSection load='4v33' size='340' side='right' caption='[[4v33]], [[Resolution\|resolution]] 1.48Å' scene=''>		<StructureSection load='4v33' size='340' side='right' caption='[[4v33]], [[Resolution\|resolution]] 1.48Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PXU:2-HYDROXY-L-PROLINE'>PXU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PXU:2-HYDROXY-L-PROLINE'>PXU</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v33 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4v33 RCSB], [http://www.ebi.ac.uk/pdbsum/4v33 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v33 OCA], [http://pdbe.org/4v33 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4v33 RCSB], [http://www.ebi.ac.uk/pdbsum/4v33 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4v33 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4v33" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:27, 15 April 2015

OCA — Wed, 15 Apr 2015 06:27:16 GMT

←Older revision		Revision as of 06:27, 15 April 2015
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v33 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4v33 RCSB], [http://www.ebi.ac.uk/pdbsum/4v33 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v33 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4v33 RCSB], [http://www.ebi.ac.uk/pdbsum/4v33 PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Membrane-anchored lipoproteins have a broad range of functions and play key roles in several cellular processes in Gram-positive bacteria. BA0330 and BA0331 are the only lipoproteins among the 11 known or putative polysaccharide deacetylases of Bacillus anthacis. We found that both lipoproteins exhibit unique characteristics. BA0330 and BA0331 interact with peptidoglycan and BA0330 is important for the adaptation of the bacterium to grow in the presence of high concentration of salt, while BA0331 contributes to maintenance of a uniform cell shape. They appear not to alter the peptidoglycan structure and do not contribute to lysozyme resistance. The high-resolution X-ray structure of BA0330 revealed a C-terminal domain with the typical fold of a carbohydrate esterase 4, and an N-terminal domain unique for this family, composed of a two-layered (4 + 3) beta-sandwich with high similarity to Fibronectin type 3 domains. Our data suggest that BA0330 and BA0331 have a structural role in stabilizing the cell wall of B. anthracis.
		+
		+	Two putative polysaccharide deacetylases are required for osmotic stability and cell shape maintenance in Bacillus anthracis.,Arnaouteli S, Giastas P, Andreou A, Tzanodaskalaki M, Aldridge C, Tzartos SJ, Vollmer W, Eliopoulos E, Bouriotis V J Biol Chem. 2015 Mar 30. pii: jbc.M115.640029. PMID:25825488<ref>PMID:25825488</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 11:17, 8 April 2015

OCA — Wed, 08 Apr 2015 11:17:01 GMT

←Older revision		Revision as of 11:17, 8 April 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis==
-		+	<StructureSection load='4v33' size='340' side='right' caption='[[4v33]], [[Resolution\|resolution]] 1.48Å' scene=''>
-	~~The entry~~ 4v33 is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4v33]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V33 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V33 FirstGlance]. <br>
-	~~Authors~~: ~~Giastas, P~~.~~, Andreou, A~~.~~, Bouriotis, V~~.~~, Eliopoulos, E~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PXU:2-HYDROXY-L-PROLINE'>PXU</scene></td></tr>
-	~~Description~~: ~~Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v33 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4v33 RCSB], [http://www.ebi.ac.uk/pdbsum/4v33 PDBsum]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[~~Category~~: ~~Bouriotis~~, V]]	+	__TOC__
		+	</StructureSection>
	[[Category: Andreou, A]]		[[Category: Andreou, A]]
-	[[Category: ~~Giastas~~, P]]	+	[[Category: Bouriotis, V]]
	[[Category: Eliopoulos, E]]		[[Category: Eliopoulos, E]]
		+	[[Category: Giastas, P]]
		+	[[Category: Fibronectin type iii domain]]
		+	[[Category: Hydrolase]]

OCA at 19:03, 24 December 2014

OCA — Wed, 24 Dec 2014 19:03:32 GMT

←Older revision		Revision as of 19:03, 24 December 2014
Line 6:		Line 6:

	Description: Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis		Description: Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis
		+	[[Category: Unreleased Structures]]
		+	[[Category: Bouriotis, V]]
		+	[[Category: Andreou, A]]
		+	[[Category: Giastas, P]]
		+	[[Category: Eliopoulos, E]]

OCA at 10:21, 29 October 2014

OCA — Wed, 29 Oct 2014 10:21:27 GMT

←Older revision		Revision as of 10:21, 29 October 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4v33 is ON HOLD	+	The entry 4v33 is ON HOLD until Paper Publication

	Authors: Giastas, P., Andreou, A., Bouriotis, V., Eliopoulos, E.		Authors: Giastas, P., Andreou, A., Bouriotis, V., Eliopoulos, E.

	Description: Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis		Description: Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis

OCA: Protected "4v33" [edit=sysop:move=sysop]

OCA — Wed, 22 Oct 2014 10:04:59 GMT

Protected "4v33" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:04, 22 October 2014

OCA: New page: '''Unreleased structure''' The entry 4v33 is ON HOLD Authors: Giastas, P., Andreou, A., Bouriotis, V., Eliopoulos, E. Description: Crystal structure of the putative polysaccharide deac...

OCA — Wed, 22 Oct 2014 10:04:58 GMT

New page: '''Unreleased structure''' The entry 4v33 is ON HOLD Authors: Giastas, P., Andreou, A., Bouriotis, V., Eliopoulos, E. Description: Crystal structure of the putative polysaccharide deac...

New page

'''Unreleased structure'''

The entry 4v33 is ON HOLD

Authors: Giastas, P., Andreou, A., Bouriotis, V., Eliopoulos, E.

Description: Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis