4wbz - Revision history

OCA at 15:22, 8 November 2023

OCA — Wed, 08 Nov 2023 15:22:06 GMT

←Older revision		Revision as of 15:22, 8 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4wbz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WBZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WBZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[4wbz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WBZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WBZ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wbz OCA], [https://pdbe.org/4wbz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wbz RCSB], [https://www.ebi.ac.uk/pdbsum/4wbz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wbz ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.3Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wbz OCA], [https://pdbe.org/4wbz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wbz RCSB], [https://www.ebi.ac.uk/pdbsum/4wbz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wbz ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	==See Also==		==See Also==
-	*[[Poly(A) ~~Polymerase~~\|Poly(A) ~~Polymerase~~]]	+	*[[Poly(A) polymerase 3D structures\|Poly(A) polymerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:01, 7 April 2023

OCA — Fri, 07 Apr 2023 07:01:14 GMT

←Older revision		Revision as of 07:01, 7 April 2023
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	<StructureSection load='4wbz' size='340' side='right'caption='[[4wbz]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='4wbz' size='340' side='right'caption='[[4wbz]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4wbz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WBZ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4WBZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4wbz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WBZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WBZ FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1vfg\|1vfg]], [[4wby\|4wby]], [[4wc0\|4wc0]], [[4wc1\|4wc1]], [[4wc2\|4wc2]], [[4wc3\|4wc3]], [[4wc4\|4wc4]], [[4wc5\|4wc5]], [[4wc6\|4wc6]], [[4wc7\|4wc7]]</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wbz OCA], [https://pdbe.org/4wbz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wbz RCSB], [https://www.ebi.ac.uk/pdbsum/4wbz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wbz ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4wbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wbz OCA], [~~http~~://pdbe.org/4wbz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4wbz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4wbz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4wbz ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/AATNT_AQUAE AATNT_AQUAE] tRNA nucleotidyltransferase involved in the synthesis of the tRNA CCA terminus. Adds the terminal adenosine residue to tRNA (PubMed:11701927, PubMed:25914059). Can incorporate CMP into tRNA ending with C74C75 (tRNACC), with very weak efficiency (PubMed:25914059).<ref>PMID:11701927</ref> <ref>PMID:25914059</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aquifex aeolicus VF5]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Tomtia, K]]	+	[[Category: Tomtia K]]
-	[[Category: Yamashita, S]]	+	[[Category: Yamashita S]]
-	~~[[Category: A-adding enzyme]]~~	+
-	~~[[Category: Cca-adding enzyme]]~~	+
-	~~[[Category: Rna nucleotidyltransferase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:42, 4 March 2020

OCA — Wed, 04 Mar 2020 07:42:00 GMT

←Older revision		Revision as of 07:42, 4 March 2020
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	==tRNA-processing enzyme (apo form 2)==		==tRNA-processing enzyme (apo form 2)==
-	<StructureSection load='4wbz' size='340' side='right' caption='[[4wbz]], [[Resolution\|resolution]] 3.30Å' scene=''>	+	<StructureSection load='4wbz' size='340' side='right'caption='[[4wbz]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4wbz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WBZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WBZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[4wbz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WBZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WBZ FirstGlance]. <br>
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	</div>		</div>
	<div class="pdbe-citations 4wbz" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4wbz" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Poly(A) Polymerase\|Poly(A) Polymerase]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Tomtia, K]]		[[Category: Tomtia, K]]
	[[Category: Yamashita, S]]		[[Category: Yamashita, S]]

OCA at 10:52, 12 October 2017

OCA — Thu, 12 Oct 2017 10:52:57 GMT

←Older revision		Revision as of 10:52, 12 October 2017
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	</div>		</div>
	<div class="pdbe-citations 4wbz" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4wbz" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Poly(A) Polymerase\|Poly(A) Polymerase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 01:56, 10 March 2017

OCA — Fri, 10 Mar 2017 01:56:45 GMT

←Older revision		Revision as of 01:56, 10 March 2017
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		+
	==tRNA-processing enzyme (apo form 2)==		==tRNA-processing enzyme (apo form 2)==
	<StructureSection load='4wbz' size='340' side='right' caption='[[4wbz]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='4wbz' size='340' side='right' caption='[[4wbz]], [[Resolution\|resolution]] 3.30Å' scene=''>
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	<table><tr><td colspan='2'>[[4wbz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WBZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WBZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[4wbz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WBZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WBZ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1vfg\|1vfg]], [[4wby\|4wby]], [[4wc0\|4wc0]], [[4wc1\|4wc1]], [[4wc2\|4wc2]], [[4wc3\|4wc3]], [[4wc4\|4wc4]], [[4wc5\|4wc5]], [[4wc6\|4wc6]], [[4wc7\|4wc7]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1vfg\|1vfg]], [[4wby\|4wby]], [[4wc0\|4wc0]], [[4wc1\|4wc1]], [[4wc2\|4wc2]], [[4wc3\|4wc3]], [[4wc4\|4wc4]], [[4wc5\|4wc5]], [[4wc6\|4wc6]], [[4wc7\|4wc7]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wbz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4wbz RCSB], [http://www.ebi.ac.uk/pdbsum/4wbz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wbz OCA], [http://pdbe.org/4wbz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4wbz RCSB], [http://www.ebi.ac.uk/pdbsum/4wbz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4wbz ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4wbz" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 10:08, 27 May 2015

OCA — Wed, 27 May 2015 10:08:26 GMT

←Older revision		Revision as of 10:08, 27 May 2015
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wbz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4wbz RCSB], [http://www.ebi.ac.uk/pdbsum/4wbz PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wbz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4wbz RCSB], [http://www.ebi.ac.uk/pdbsum/4wbz PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The 3'-terminal CCA (C74C75A76-3') of tRNA is required for protein synthesis. In Aquifex aeolicus, the CCA-3' is synthesized by CC-adding and A-adding enzymes, although in most organisms, CCA is synthesized by a single CCA-adding enzyme. The mechanisms by which the A-adding enzyme adds only A76, but not C74C75, onto tRNA remained elusive. The complex structures of the enzyme with various tRNAs revealed the presence of a single tRNA binding site on the enzyme, with the enzyme measuring the acceptor-TPsiC helix length of tRNA. The 3'-C75 of tRNA lacking A76 can reach the active site and the size and shape of the nucleotide binding pocket at the insertion stage are suitable for ATP. The 3'-C74 of tRNA lacking C75A76 cannot reach the active site, although CTP or ATP can bind the active pocket. Thus, the A-adding enzyme adds only A76, but not C74C75, onto tRNA.
		+
		+	Measurement of Acceptor-TPsiC Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.,Yamashita S, Martinez A, Tomita K Structure. 2015 May 5;23(5):830-42. doi: 10.1016/j.str.2015.03.013. Epub 2015 Apr, 23. PMID:25914059<ref>PMID:25914059</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+
		+	==See Also==
		+	*[[Poly(A) Polymerase\|Poly(A) Polymerase]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 13:01, 15 April 2015

OCA — Wed, 15 Apr 2015 13:01:51 GMT

←Older revision		Revision as of 13:01, 15 April 2015
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-	'''~~Unreleased structure~~'''	+	==tRNA-processing enzyme (apo form 2)==
-		+	<StructureSection load='4wbz' size='340' side='right' caption='[[4wbz]], [[Resolution\|resolution]] 3.30Å' scene=''>
-	~~The entry~~ 4wbz is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4wbz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WBZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WBZ FirstGlance]. <br>
-	~~Authors~~: ~~Yamashita, S~~.~~, Tomtia, K~~.	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1vfg\|1vfg]], [[4wby\|4wby]], [[4wc0\|4wc0]], [[4wc1\|4wc1]], [[4wc2\|4wc2]], [[4wc3\|4wc3]], [[4wc4\|4wc4]], [[4wc5\|4wc5]], [[4wc6\|4wc6]], [[4wc7\|4wc7]]</td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wbz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4wbz RCSB], [http://www.ebi.ac.uk/pdbsum/4wbz PDBsum]</span></td></tr>
-	~~Description~~:	+	</table>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	__TOC__
-	[[~~Category~~: ~~Yamashita~~, S]]	+	</StructureSection>
	[[Category: Tomtia, K]]		[[Category: Tomtia, K]]
		+	[[Category: Yamashita, S]]
		+	[[Category: A-adding enzyme]]
		+	[[Category: Cca-adding enzyme]]
		+	[[Category: Rna nucleotidyltransferase]]
		+	[[Category: Transferase]]

OCA at 19:18, 24 December 2014

OCA — Wed, 24 Dec 2014 19:18:37 GMT

←Older revision		Revision as of 19:18, 24 December 2014
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	Authors: Yamashita, S., Tomtia, K.		Authors: Yamashita, S., Tomtia, K.

-	Description:	+	Description:
		+	[[Category: Unreleased Structures]]
		+	[[Category: Yamashita, S]]
		+	[[Category: Tomtia, K]]

OCA at 09:07, 24 September 2014

OCA — Wed, 24 Sep 2014 09:07:17 GMT

←Older revision		Revision as of 09:07, 24 September 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4wbz is ON HOLD	+	The entry 4wbz is ON HOLD until Paper Publication

	Authors: Yamashita, S., Tomtia, K.		Authors: Yamashita, S., Tomtia, K.

	Description:		Description:

OCA: Protected "4wbz" [edit=sysop:move=sysop]

OCA — Wed, 10 Sep 2014 08:56:31 GMT

Protected "4wbz" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:56, 10 September 2014