4wg1 - Revision history

OCA at 10:42, 10 January 2024

OCA — Wed, 10 Jan 2024 10:42:45 GMT

←Older revision		Revision as of 10:42, 10 January 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4wg1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WG1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4wg1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WG1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wg1 OCA], [https://pdbe.org/4wg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wg1 RCSB], [https://www.ebi.ac.uk/pdbsum/4wg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wg1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wg1 OCA], [https://pdbe.org/4wg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wg1 RCSB], [https://www.ebi.ac.uk/pdbsum/4wg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wg1 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 07:07, 7 April 2023

OCA — Fri, 07 Apr 2023 07:07:13 GMT

←Older revision		Revision as of 07:07, 7 April 2023
Line 3:		Line 3:
	<StructureSection load='4wg1' size='340' side='right'caption='[[4wg1]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='4wg1' size='340' side='right'caption='[[4wg1]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4wg1]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WG1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4WG1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4wg1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WG1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wg1 OCA], [https://pdbe.org/4wg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wg1 RCSB], [https://www.ebi.ac.uk/pdbsum/4wg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wg1 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4wg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wg1 OCA], [~~http~~://pdbe.org/4wg1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4wg1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4wg1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4wg1 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 28:		Line 27:
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Brewster AS]]
-	[[Category: Brewster~~, A S~~]]	+	[[Category: Burghammer M]]
-	[[Category: Burghammer, M]]	+	[[Category: Colletier JP]]
-	[[Category: Colletier~~, J P~~]]	+	[[Category: Coquelle N]]
-	[[Category: Coquelle, N]]	+	[[Category: Kapp U]]
-	[[Category: Kapp, U]]	+	[[Category: Sauter NK]]
-	[[Category: Sauter~~, N K~~]]	+	[[Category: Shilova A]]
-	[[Category: Shilova, A]]	+	[[Category: Weimhausen B]]
-	[[Category: Weimhausen, B]]	+
-	~~[[Category: Crystfel]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Nanopeakcell]]~~	+
-	~~[[Category: Serial crystallography]]~~	+
-	~~[[Category: Serial synchrotron crystallography~~]]	+

OCA at 08:32, 23 May 2019

OCA — Thu, 23 May 2019 08:32:48 GMT

←Older revision		Revision as of 08:32, 23 May 2019
Line 1:		Line 1:

	==Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam - crystFEL)==		==Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam - crystFEL)==
-	<StructureSection load='4wg1' size='340' side='right' caption='[[4wg1]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='4wg1' size='340' side='right'caption='[[4wg1]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4wg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WG1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WG1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4wg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WG1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WG1 FirstGlance]. <br>
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 4wg1" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4wg1" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 24:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Brewster, A S]]		[[Category: Brewster, A S]]

OCA at 08:12, 27 July 2016

OCA — Wed, 27 Jul 2016 08:12:48 GMT

←Older revision		Revision as of 08:12, 27 July 2016
Line 1:		Line 1:
		+
	==Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam - crystFEL)==		==Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam - crystFEL)==
	<StructureSection load='4wg1' size='340' side='right' caption='[[4wg1]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='4wg1' size='340' side='right' caption='[[4wg1]], [[Resolution\|resolution]] 1.70Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wg1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4wg1 RCSB], [http://www.ebi.ac.uk/pdbsum/4wg1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wg1 OCA], [http://pdbe.org/4wg1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4wg1 RCSB], [http://www.ebi.ac.uk/pdbsum/4wg1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4wg1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>		[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	High-resolution structural information was obtained from lysozyme microcrystals (20 microm in the largest dimension) using raster-scanning serial protein crystallography on micro- and nano-focused beamlines at the ESRF. Data were collected at room temperature (RT) from crystals sandwiched between two silicon nitride wafers, thereby preventing their drying, while limiting background scattering and sample consumption. In order to identify crystal hits, new multi-processing and GUI-driven Python-based pre-analysis software was developed, named NanoPeakCell, that was able to read data from a variety of crystallographic image formats. Further data processing was carried out using CrystFEL, and the resultant structures were refined to 1.7 A resolution. The data demonstrate the feasibility of RT raster-scanning serial micro- and nano-protein crystallography at synchrotrons and validate it as an alternative approach for the collection of high-resolution structural data from micro-sized crystals. Advantages of the proposed approach are its thriftiness, its handling-free nature, the reduced amount of sample required, the adjustable hit rate, the high indexing rate and the minimization of background scattering.
		+
		+	Raster-scanning serial protein crystallography using micro- and nano-focused synchrotron beams.,Coquelle N, Brewster AS, Kapp U, Shilova A, Weinhausen B, Burghammer M, Colletier JP Acta Crystallogr D Biol Crystallogr. 2015 May;71(Pt 5):1184-96. doi:, 10.1107/S1399004715004514. Epub 2015 Apr 25. PMID:25945583<ref>PMID:25945583</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 4wg1" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:00, 6 May 2015

OCA — Wed, 06 May 2015 13:00:17 GMT

←Older revision		Revision as of 13:00, 6 May 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam - crystFEL)==
-		+	<StructureSection load='4wg1' size='340' side='right' caption='[[4wg1]], [[Resolution\|resolution]] 1.70Å' scene=''>
-	~~The entry~~ 4wg1 is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4wg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WG1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WG1 FirstGlance]. <br>
-	~~Authors~~: ~~Coquelle, N~~., ~~Brewster, A~~.S.~~, Kapp, U~~.~~, Shilova, A~~.~~, Weimhausen, B~~., ~~Sauter, N~~.K., ~~Burghammer, M~~., ~~Colletier, J~~.P.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	~~Description~~: ~~Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam~~ -~~crystFEL)~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wg1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4wg1 RCSB], [http://www.ebi.ac.uk/pdbsum/4wg1 PDBsum]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: ~~Coquelle~~, N]]	+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Lysozyme]]
		+	[[Category: Brewster, A S]]
	[[Category: Burghammer, M]]		[[Category: Burghammer, M]]
-	[[Category: ~~Shilova~~, A]]	+	[[Category: Colletier, J P]]
		+	[[Category: Coquelle, N]]
	[[Category: Kapp, U]]		[[Category: Kapp, U]]
-	~~[[Category: Colletier, J.P]]~~	+	[[Category: Sauter, N K]]
-	[[Category: Sauter, N.K]]	+	[[Category: Shilova, A]]
-	[[Category: ~~Brewster~~, A.S]]	+
	[[Category: Weimhausen, B]]		[[Category: Weimhausen, B]]
		+	[[Category: Crystfel]]
		+	[[Category: Hydrolase]]
		+	[[Category: Nanopeakcell]]
		+	[[Category: Serial crystallography]]
		+	[[Category: Serial synchrotron crystallography]]

OCA at 19:27, 24 December 2014

OCA — Wed, 24 Dec 2014 19:27:14 GMT

←Older revision		Revision as of 19:27, 24 December 2014
Line 6:		Line 6:

	Description: Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam -crystFEL)		Description: Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam -crystFEL)
		+	[[Category: Unreleased Structures]]
		+	[[Category: Coquelle, N]]
		+	[[Category: Burghammer, M]]
		+	[[Category: Shilova, A]]
		+	[[Category: Kapp, U]]
		+	[[Category: Colletier, J.P]]
		+	[[Category: Sauter, N.K]]
		+	[[Category: Brewster, A.S]]
		+	[[Category: Weimhausen, B]]

OCA: Protected "4wg1" [edit=sysop:move=sysop]

OCA — Wed, 24 Sep 2014 09:14:55 GMT

Protected "4wg1" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:14, 24 September 2014

OCA: New page: '''Unreleased structure''' The entry 4wg1 is ON HOLD Authors: Coquelle, N., Brewster, A.S., Kapp, U., Shilova, A., Weimhausen, B., Sauter, N.K., Burghammer, M., Colletier, J.P. Descrip...

OCA — Wed, 24 Sep 2014 09:14:53 GMT

New page: '''Unreleased structure''' The entry 4wg1 is ON HOLD Authors: Coquelle, N., Brewster, A.S., Kapp, U., Shilova, A., Weimhausen, B., Sauter, N.K., Burghammer, M., Colletier, J.P. Descrip...

New page

'''Unreleased structure'''

The entry 4wg1 is ON HOLD

Authors: Coquelle, N., Brewster, A.S., Kapp, U., Shilova, A., Weimhausen, B., Sauter, N.K., Burghammer, M., Colletier, J.P.

Description: Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam -crystFEL)