4xpx - Revision history

OCA at 15:30, 8 November 2023

OCA — Wed, 08 Nov 2023 15:30:35 GMT

←Older revision		Revision as of 15:30, 8 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4xpx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylococcus_capsulatus_str._Bath Methylococcus capsulatus str. Bath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XPX FirstGlance]. <br>		<table><tr><td colspan='2'>[[4xpx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylococcus_capsulatus_str._Bath Methylococcus capsulatus str. Bath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XPX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.03Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xpx OCA], [https://pdbe.org/4xpx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xpx RCSB], [https://www.ebi.ac.uk/pdbsum/4xpx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xpx ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xpx OCA], [https://pdbe.org/4xpx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xpx RCSB], [https://www.ebi.ac.uk/pdbsum/4xpx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xpx ProSAT]</span></td></tr>
	</table>		</table>

OCA at 17:47, 26 April 2023

OCA — Wed, 26 Apr 2023 17:47:06 GMT

←Older revision		Revision as of 17:47, 26 April 2023
Line 3:		Line 3:
	<StructureSection load='4xpx' size='340' side='right'caption='[[4xpx]], [[Resolution\|resolution]] 1.03Å' scene=''>		<StructureSection load='4xpx' size='340' side='right'caption='[[4xpx]], [[Resolution\|resolution]] 1.03Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4xpx]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Metca Metca~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XPX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4XPX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4xpx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylococcus_capsulatus_str._Bath Methylococcus capsulatus str. Bath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XPX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4xpw\|4xpw]], [[4xpy\|4xpy]], [[4xq1\|4xq1]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xpx OCA], [https://pdbe.org/4xpx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xpx RCSB], [https://www.ebi.ac.uk/pdbsum/4xpx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xpx ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4xpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xpx OCA], [~~http~~://pdbe.org/4xpx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4xpx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4xpx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4xpx ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/HEMTB_METCA HEMTB_METCA]] Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen-binding site contains two iron atoms.<ref>PMID:15885093</ref>	+	[https://www.uniprot.org/uniprot/HEMTB_METCA HEMTB_METCA] Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen-binding site contains two iron atoms.<ref>PMID:15885093</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Metca~~]]	+	[[Category: Methylococcus capsulatus str. Bath]]
-	[[Category: Chan~~, S I~~]]	+	[[Category: Chan SI]]
-	[[Category: Chen~~, C J~~]]	+	[[Category: Chen CJ]]
-	[[Category: Chen~~, K H.C~~]]	+	[[Category: Chen KHC]]
-	[[Category: Chuankhayan, P]]	+	[[Category: Chuankhayan P]]
-	[[Category: Fukuda, M]]	+	[[Category: Fukuda M]]
-	[[Category: Wu~~, H H~~]]	+	[[Category: Wu HH]]
-	[[Category: Yu~~, S S.F]]~~	+	[[Category: Yu SSF]]
-	~~[[Category: Oxygen binding protein~~]]	+

OCA at 23:54, 5 June 2019

OCA — Wed, 05 Jun 2019 23:54:24 GMT

←Older revision		Revision as of 23:54, 5 June 2019
Line 1:		Line 1:
		+
	==Crystal structure of hemerythrin:wild-type==		==Crystal structure of hemerythrin:wild-type==
-	<StructureSection load='4xpx' size='340' side='right' caption='[[4xpx]], [[Resolution\|resolution]] 1.03Å' scene=''>	+	<StructureSection load='4xpx' size='340' side='right'caption='[[4xpx]], [[Resolution\|resolution]] 1.03Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4xpx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methylococcus_capsulatus_(strain_atcc_33009_/_ncimb_11132_/_bath) Methylococcus capsulatus (strain atcc 33009 / ncimb 11132 / bath)~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XPX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XPX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4xpx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metca Metca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XPX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XPX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4xpw\|4xpw]], [[4xpy\|4xpy]], [[4xq1\|4xq1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4xpw\|4xpw]], [[4xpy\|4xpy]], [[4xq1\|4xq1]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xpx OCA], [http://pdbe.org/4xpx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xpx RCSB], [http://www.ebi.ac.uk/pdbsum/4xpx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xpx OCA], [http://pdbe.org/4xpx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xpx RCSB], [http://www.ebi.ac.uk/pdbsum/4xpx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xpx ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Metca]]
	[[Category: Chan, S I]]		[[Category: Chan, S I]]
	[[Category: Chen, C J]]		[[Category: Chen, C J]]

OCA at 07:31, 9 December 2015

OCA — Wed, 09 Dec 2015 07:31:15 GMT

←Older revision		Revision as of 07:31, 9 December 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4xpw\|4xpw]], [[4xpy\|4xpy]], [[4xq1\|4xq1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4xpw\|4xpw]], [[4xpy\|4xpy]], [[4xq1\|4xq1]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xpx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4xpx RCSB], [http://www.ebi.ac.uk/pdbsum/4xpx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xpx OCA], [http://pdbe.org/4xpx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xpx RCSB], [http://www.ebi.ac.uk/pdbsum/4xpx PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4xpx" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:37, 6 May 2015

OCA — Wed, 06 May 2015 07:37:12 GMT

←Older revision		Revision as of 07:37, 6 May 2015
Line 9:		Line 9:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/HEMTB_METCA HEMTB_METCA]] Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen-binding site contains two iron atoms.<ref>PMID:15885093</ref>		[[http://www.uniprot.org/uniprot/HEMTB_METCA HEMTB_METCA]] Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen-binding site contains two iron atoms.<ref>PMID:15885093</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The bacteriohemerythrin (McHr) from Methylococcus capsulatus (Bath) is an oxygen carrier that serves as a transporter to deliver O2 from the cytosol of the bacterial cell body to the particulate methane monooxygenase residing in the intracytoplasmic membranes for methane oxidation. Here we report X-ray protein crystal structures of the recombinant wild type (WT) McHr and its L114A, L114Y and L114F mutants. The structure of the WT reveals a possible water tunnel in the McHr that might be linked to its faster autoxidation relative to hemerythrin in marine invertebrates. With Leu114 positioned at the end of this putative water tunnel, the hydrophobic side chain of this residue seems to play a prominent role in controlling the access of the water molecule required for autoxidation. This hypothesis is examined by comparing the autoxidation rates of the WT McHr with those of the L114A, L114Y and L114F mutants. The biochemical data are correlated with structural insights derived from the analysis of the putative water tunnels in the various McHr proteins provided by the X-ray structures.
		+
		+	The bacteriohemerythrin from Methylococcus capsulatus (Bath): Crystal structures reveal that Leu114 regulates a water tunnel.,Chen KH, Chuankhayan P, Wu HH, Chen CJ, Fukuda M, Yu SS, Chan SI J Inorg Biochem. 2015 Apr 10. pii: S0162-0134(15)00094-X. doi:, 10.1016/j.jinorgbio.2015.04.001. PMID:25890483<ref>PMID:25890483</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:37, 30 April 2015

OCA — Thu, 30 Apr 2015 11:37:15 GMT

←Older revision		Revision as of 11:37, 30 April 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Crystal structure of hemerythrin:wild-type==
-		+	<StructureSection load='4xpx' size='340' side='right' caption='[[4xpx]], [[Resolution\|resolution]] 1.03Å' scene=''>
-	~~The entry~~ 4xpx is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4xpx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methylococcus_capsulatus_(strain_atcc_33009_/_ncimb_11132_/_bath) Methylococcus capsulatus (strain atcc 33009 / ncimb 11132 / bath)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XPX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XPX FirstGlance]. <br>
-	~~Authors~~: ~~Chuankhayan, P~~.~~, Chen, K~~.H.C.~~, Wu, H~~.H., ~~Chen~~, C.J., ~~Fukuda, M~~., ~~Yu, S~~.S.F., ~~Chan, S~~.I.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4xpw\|4xpw]], [[4xpy\|4xpy]], [[4xq1\|4xq1]]</td></tr>
-	~~Description~~: ~~Crystal structure of hemerythrin:wild~~-~~type~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xpx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4xpx RCSB], [http://www.ebi.ac.uk/pdbsum/4xpx PDBsum]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: Yu, ~~S.S.F~~]]	+	== Function ==
-	[[Category: ~~Chan~~, S.I]]	+	[[http://www.uniprot.org/uniprot/HEMTB_METCA HEMTB_METCA]] Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen-binding site contains two iron atoms.<ref>PMID:15885093</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chan, S I]]
		+	[[Category: Chen, C J]]
		+	[[Category: Chen, K H.C]]
	[[Category: Chuankhayan, P]]		[[Category: Chuankhayan, P]]
	[[Category: Fukuda, M]]		[[Category: Fukuda, M]]
-	[[Category: ~~Chen~~, K.H.C]]	+	[[Category: Wu, H H]]
-	[[Category: ~~Chen~~, C.J]]	+	[[Category: Yu, S S.F]]
-	[[Category: ~~Wu, H.H~~]]	+	[[Category: Oxygen binding protein]]

OCA at 14:42, 7 February 2015

OCA — Sat, 07 Feb 2015 14:42:21 GMT

←Older revision		Revision as of 14:42, 7 February 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4xpx is ON HOLD	+	The entry 4xpx is ON HOLD until Paper Publication

-	Authors: Chuankhayan, P., Chen, K.H. -C, Wu, H.H., Chen, C.J., Fukuda, M, Yu, S.S. -F, Chan, S.I.	+	Authors: Chuankhayan, P., Chen, K.H.C., Wu, H.H., Chen, C.J., Fukuda, M., Yu, S.S.F., Chan, S.I.

	Description: Crystal structure of hemerythrin:wild-type		Description: Crystal structure of hemerythrin:wild-type
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: ~~Fukuda, M,~~ Yu, S.S. -F, Chan, S.I]]	+	[[Category: Yu, S.S.F]]
		+	[[Category: Chan, S.I]]
	[[Category: Chuankhayan, P]]		[[Category: Chuankhayan, P]]
-	[[Category: Chen, K.H. -C~~, Wu, H.H~~]]	+	[[Category: Fukuda, M]]
		+	[[Category: Chen, K.H.C]]
	[[Category: Chen, C.J]]		[[Category: Chen, C.J]]
		+	[[Category: Wu, H.H]]

OCA: Protected "4xpx" [edit=sysop:move=sysop]

OCA — Wed, 28 Jan 2015 15:40:34 GMT

Protected "4xpx" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:40, 28 January 2015

OCA: New page: '''Unreleased structure''' The entry 4xpx is ON HOLD Authors: Chuankhayan, P., Chen, K.H. -C, Wu, H.H., Chen, C.J., Fukuda, M, Yu, S.S. -F, Chan, S.I. Description: Crystal structure of...

OCA — Wed, 28 Jan 2015 15:40:33 GMT

New page: '''Unreleased structure''' The entry 4xpx is ON HOLD Authors: Chuankhayan, P., Chen, K.H. -C, Wu, H.H., Chen, C.J., Fukuda, M, Yu, S.S. -F, Chan, S.I. Description: Crystal structure of...

New page

'''Unreleased structure'''

The entry 4xpx is ON HOLD

Authors: Chuankhayan, P., Chen, K.H. -C, Wu, H.H., Chen, C.J., Fukuda, M, Yu, S.S. -F, Chan, S.I.

Description: Crystal structure of hemerythrin:wild-type
[[Category: Unreleased Structures]]
[[Category: Fukuda, M, Yu, S.S. -F, Chan, S.I]]
[[Category: Chuankhayan, P]]
[[Category: Chen, K.H. -C, Wu, H.H]]
[[Category: Chen, C.J]]