4xuy - Revision history

OCA at 07:50, 27 September 2023

OCA — Wed, 27 Sep 2023 07:50:02 GMT

←Older revision		Revision as of 07:50, 27 September 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4xuy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_niger_CBS_513.88 Aspergillus niger CBS 513.88]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XUY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XUY FirstGlance]. <br>		<table><tr><td colspan='2'>[[4xuy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_niger_CBS_513.88 Aspergillus niger CBS 513.88]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XUY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XUY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.0027Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xuy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xuy OCA], [https://pdbe.org/4xuy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xuy RCSB], [https://www.ebi.ac.uk/pdbsum/4xuy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xuy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xuy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xuy OCA], [https://pdbe.org/4xuy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xuy RCSB], [https://www.ebi.ac.uk/pdbsum/4xuy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xuy ProSAT]</span></td></tr>
	</table>		</table>

OCA at 17:53, 26 April 2023

OCA — Wed, 26 Apr 2023 17:53:37 GMT

←Older revision		Revision as of 17:53, 26 April 2023
Line 1:		Line 1:

	==Crystal structure of an endo-beta-1,4-xylanase (glycoside hydrolase family 10/GH10) enzyme from Aspergillus niger==		==Crystal structure of an endo-beta-1,4-xylanase (glycoside hydrolase family 10/GH10) enzyme from Aspergillus niger==
-	<StructureSection load='4xuy' size='340' side='right' caption='[[4xuy]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='4xuy' size='340' side='right'caption='[[4xuy]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4xuy]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Aspnc Aspnc~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XUY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4XUY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4xuy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_niger_CBS_513.88 Aspergillus niger CBS 513.88]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XUY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XUY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=~~SO4~~:~~SULFATE~~+~~ION~~'>~~SO4~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~PCA~~:~~PYROGLUTAMIC~~+~~ACID~~'>~~PCA~~</scene~~></td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xuy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xuy OCA], [https://pdbe.org/4xuy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xuy RCSB], [https://www.ebi.ac.uk/pdbsum/4xuy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xuy ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xlnC, xynA, An03g00940 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=425011 ASPNC])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4xuy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xuy OCA], [~~http~~://pdbe.org/4xuy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4xuy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4xuy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4xuy ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/XYNC_ASPNC XYNC_ASPNC]] Endo-1,4-beta-xylanase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose.	+	[https://www.uniprot.org/uniprot/XYNC_ASPNC XYNC_ASPNC] Endo-1,4-beta-xylanase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aspnc~~]]	+	[[Category: Aspergillus niger CBS 513 88]]
-	[[Category: ~~Endo-1,4-beta-xylanase~~]]	+	[[Category: Large Structures]]
-	[[Category: Cui, H]]	+	[[Category: Cui H]]
-	[[Category: Dong, A]]	+	[[Category: Dong A]]
-	[[Category: Savchenko, A]]	+	[[Category: Savchenko A]]
-	[[Category: Stogios~~, P J~~]]	+	[[Category: Stogios PJ]]
-	[[Category: Xu, X]]	+	[[Category: Xu X]]
-	~~[[Category: Beta8/alpha8 fold]]~~	+
-	~~[[Category: Fungus]]~~	+
-	~~[[Category: Genomic]]~~	+
-	~~[[Category: Gh10]]~~	+
-	~~[[Category: Glycoside hydrolase family 10]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Tim barrel]]~~	+
-	~~[[Category: Xylanase~~]]	+

OCA at 09:37, 22 November 2017

OCA — Wed, 22 Nov 2017 09:37:52 GMT

←Older revision		Revision as of 09:37, 22 November 2017
Line 3:		Line 3:
	<StructureSection load='4xuy' size='340' side='right' caption='[[4xuy]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='4xuy' size='340' side='right' caption='[[4xuy]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4xuy]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XUY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XUY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4xuy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspnc Aspnc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XUY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XUY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xlnC, xynA, An03g00940 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=425011 ASPNC])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xuy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xuy OCA], [http://pdbe.org/4xuy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xuy RCSB], [http://www.ebi.ac.uk/pdbsum/4xuy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xuy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xuy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xuy OCA], [http://pdbe.org/4xuy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xuy RCSB], [http://www.ebi.ac.uk/pdbsum/4xuy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xuy ProSAT]</span></td></tr>
Line 13:		Line 14:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aspnc]]
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Cui, H]]		[[Category: Cui, H]]

OCA at 01:57, 10 March 2017

OCA — Fri, 10 Mar 2017 01:57:55 GMT

←Older revision		Revision as of 01:57, 10 March 2017
Line 1:		Line 1:
		+
	==Crystal structure of an endo-beta-1,4-xylanase (glycoside hydrolase family 10/GH10) enzyme from Aspergillus niger==		==Crystal structure of an endo-beta-1,4-xylanase (glycoside hydrolase family 10/GH10) enzyme from Aspergillus niger==
	<StructureSection load='4xuy' size='340' side='right' caption='[[4xuy]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='4xuy' size='340' side='right' caption='[[4xuy]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xuy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xuy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4xuy RCSB], [http://www.ebi.ac.uk/pdbsum/4xuy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xuy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xuy OCA], [http://pdbe.org/4xuy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xuy RCSB], [http://www.ebi.ac.uk/pdbsum/4xuy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xuy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 12:07, 12 February 2015

OCA — Thu, 12 Feb 2015 12:07:25 GMT

←Older revision		Revision as of 12:07, 12 February 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Crystal structure of an endo-beta-1,4-xylanase (glycoside hydrolase family 10/GH10) enzyme from Aspergillus niger==
-		+	<StructureSection load='4xuy' size='340' side='right' caption='[[4xuy]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~The entry~~ 4xuy is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4xuy]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XUY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XUY FirstGlance]. <br>
-	~~Authors~~: ~~Stogios~~, P.J., Xu, X., ~~Cui~~, H., ~~Savchenko, A~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	~~Description~~: ~~Crystal structure of an endo~~-beta-1,4-xylanase ~~(glycoside hydrolase family 10/GH10) enzyme from Aspergillus niger~~	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xuy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xuy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4xuy RCSB], [http://www.ebi.ac.uk/pdbsum/4xuy PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/XYNC_ASPNC XYNC_ASPNC]] Endo-1,4-beta-xylanase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Endo-1,4-beta-xylanase]]
		+	[[Category: Cui, H]]
		+	[[Category: Dong, A]]
	[[Category: Savchenko, A]]		[[Category: Savchenko, A]]
-	[[Category: Stogios, P.J]]	+	[[Category: Stogios, P J]]
	[[Category: Xu, X]]		[[Category: Xu, X]]
-	[[Category: ~~Cui, H~~]]	+	[[Category: Beta8/alpha8 fold]]
		+	[[Category: Fungus]]
		+	[[Category: Genomic]]
		+	[[Category: Gh10]]
		+	[[Category: Glycoside hydrolase family 10]]
		+	[[Category: Hydrolase]]
		+	[[Category: Tim barrel]]
		+	[[Category: Xylanase]]

OCA: Protected "4xuy" [edit=sysop:move=sysop]

OCA — Sat, 07 Feb 2015 14:51:21 GMT

Protected "4xuy" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:51, 7 February 2015

OCA: New page: '''Unreleased structure''' The entry 4xuy is ON HOLD Authors: Stogios, P.J., Xu, X., Cui, H., Savchenko, A. Description: Crystal structure of an endo-beta-1,4-xylanase (glycoside hydro...

OCA — Sat, 07 Feb 2015 14:51:20 GMT

New page: '''Unreleased structure''' The entry 4xuy is ON HOLD Authors: Stogios, P.J., Xu, X., Cui, H., Savchenko, A. Description: Crystal structure of an endo-beta-1,4-xylanase (glycoside hydro...

New page

'''Unreleased structure'''

The entry 4xuy is ON HOLD

Authors: Stogios, P.J., Xu, X., Cui, H., Savchenko, A.

Description: Crystal structure of an endo-beta-1,4-xylanase (glycoside hydrolase family 10/GH10) enzyme from Aspergillus niger
[[Category: Unreleased Structures]]
[[Category: Savchenko, A]]
[[Category: Stogios, P.J]]
[[Category: Xu, X]]
[[Category: Cui, H]]