4y6c - Revision history

OCA at 08:00, 3 May 2023

OCA — Wed, 03 May 2023 08:00:43 GMT

←Older revision		Revision as of 08:00, 3 May 2023
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	==Q17M crystal structure of Podosopora anserina putative kinesin light chain nearly identical TPR-like repeats==		==Q17M crystal structure of Podosopora anserina putative kinesin light chain nearly identical TPR-like repeats==
-	<StructureSection load='4y6c' size='340' side='right' caption='[[4y6c]], [[Resolution\|resolution]] 1.77Å' scene=''>	+	<StructureSection load='4y6c' size='340' side='right'caption='[[4y6c]], [[Resolution\|resolution]] 1.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4y6c]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Podas Podas~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y6C OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4Y6C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4y6c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Podospora_anserina Podospora anserina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y6C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Y6C FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr~~ id~~='NonStdRes'><td class~~="~~sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat~~"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene><~~/td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4y6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y6c OCA], [https://pdbe.org/4y6c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4y6c RCSB], [https://www.ebi.ac.uk/pdbsum/4y6c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4y6c ProSAT]</span></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat">[[4y6w\|4y6w]]</td></tr>~~	+
-	~~<tr id='gene~~'>~~<td class="sblockLbl"><b>[[Gene\|Gene:]]~~</b>~~</td><td class="sblockDat">CDP31375.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5145 PODAS])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4y6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y6c OCA], [~~http~~://pdbe.org/4y6c PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4y6c RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4y6c PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4y6c ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A090CRQ5_PODAN A0A090CRQ5_PODAN]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Podas~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Barrick, D~~]]	+	[[Category: Podospora anserina]]
-	[[Category: ~~Bowman, G~~ D]]	+	[[Category: Barrick D]]
-	[[Category: ~~Kavran, J M~~]]	+	[[Category: Bowman GD]]
-	[[Category: ~~Marold, J D~~]]	+	[[Category: Kavran JM]]
-	[[Category: ~~Tetratricopeptide repeat]]~~	+	[[Category: Marold JD]]
-	~~[[Category: Tpr]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 09:06, 1 November 2017

OCA — Wed, 01 Nov 2017 09:06:15 GMT

←Older revision		Revision as of 09:06, 1 November 2017
Line 1:		Line 1:
		+
	==Q17M crystal structure of Podosopora anserina putative kinesin light chain nearly identical TPR-like repeats==		==Q17M crystal structure of Podosopora anserina putative kinesin light chain nearly identical TPR-like repeats==
	<StructureSection load='4y6c' size='340' side='right' caption='[[4y6c]], [[Resolution\|resolution]] 1.77Å' scene=''>		<StructureSection load='4y6c' size='340' side='right' caption='[[4y6c]], [[Resolution\|resolution]] 1.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4y6c]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y6C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Y6C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4y6c]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Podas Podas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y6C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Y6C FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4y6w\|4y6w]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4y6w\|4y6w]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4y6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y6c OCA], [http://pdbe.org/4y6c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4y6c RCSB], [http://www.ebi.ac.uk/pdbsum/4y6c PDBsum]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CDP31375.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5145 PODAS])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4y6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y6c OCA], [http://pdbe.org/4y6c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4y6c RCSB], [http://www.ebi.ac.uk/pdbsum/4y6c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4y6c ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 21:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Podas]]
	[[Category: Barrick, D]]		[[Category: Barrick, D]]
	[[Category: Bowman, G D]]		[[Category: Bowman, G D]]

OCA at 23:49, 21 October 2015

OCA — Wed, 21 Oct 2015 23:49:18 GMT

←Older revision		Revision as of 23:49, 21 October 2015
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4y6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y6c OCA], [http://pdbe.org/4y6c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4y6c RCSB], [http://www.ebi.ac.uk/pdbsum/4y6c PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4y6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y6c OCA], [http://pdbe.org/4y6c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4y6c RCSB], [http://www.ebi.ac.uk/pdbsum/4y6c PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Linear repeat proteins often have high structural similarity and low ( approximately 25%) pairwise sequence identities (PSI) among modules. We identified a unique P. anserina (Pa) sequence with tetratricopeptide repeat (TPR) homology, which contains longer (42 residue) repeats (42PRs) with an average PSI >91%. We determined the crystal structure of five tandem Pa 42PRs to 1.6 A, and examined the stability and solution properties of constructs containing three to six Pa 42PRs. Compared with 34-residue TPRs (34PRs), Pa 42PRs have a one-turn extension of each helix, and bury more surface area. Unfolding transitions shift to higher denaturant concentration and become sharper as repeats are added. Fitted Ising models show Pa 42PRs to be more cooperative than consensus 34PRs, with increased magnitudes of intrinsic and interfacial free energies. These results demonstrate the tolerance of the TPR motif to length variation, and provide a basis to understand the effects of helix length on intrinsic/interfacial stability.
		+
		+	A Naturally Occurring Repeat Protein with High Internal Sequence Identity Defines a New Class of TPR-like Proteins.,Marold JD, Kavran JM, Bowman GD, Barrick D Structure. 2015 Oct 1. pii: S0969-2126(15)00369-X. doi:, 10.1016/j.str.2015.07.022. PMID:26439765<ref>PMID:26439765</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 4y6c" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 13:50, 7 October 2015

OCA — Wed, 07 Oct 2015 13:50:25 GMT

←Older revision		Revision as of 13:50, 7 October 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Q17M crystal structure of Podosopora anserina putative kinesin light chain nearly identical TPR-like repeats==
-		+	<StructureSection load='4y6c' size='340' side='right' caption='[[4y6c]], [[Resolution\|resolution]] 1.77Å' scene=''>
-	~~The entry~~ 4y6c is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4y6c]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y6C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Y6C FirstGlance]. <br>
-	~~Authors~~: ~~Marold, J~~.D.~~, Kavran, J~~.M.~~, Bowman, G~~.D.~~, Barrick, D~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~Description~~:	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4y6w\|4y6w]]</td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4y6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y6c OCA], [http://pdbe.org/4y6c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4y6c RCSB], [http://www.ebi.ac.uk/pdbsum/4y6c PDBsum]</span></td></tr>
-	[[~~Category~~: ~~Marold, J.D~~]]	+	</table>
-	[[~~Category~~: ~~Bowman~~, G.D]]	+	__TOC__
		+	</StructureSection>
	[[Category: Barrick, D]]		[[Category: Barrick, D]]
-	[[Category: Kavran, J.M]]	+	[[Category: Bowman, G D]]
		+	[[Category: Kavran, J M]]
		+	[[Category: Marold, J D]]
		+	[[Category: Tetratricopeptide repeat]]
		+	[[Category: Tpr]]
		+	[[Category: Unknown function]]

OCA at 10:26, 18 March 2015

OCA — Wed, 18 Mar 2015 10:26:17 GMT

←Older revision		Revision as of 10:26, 18 March 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4y6c is ON HOLD	+	The entry 4y6c is ON HOLD until Paper Publication

-	Authors: Marold, J.D., Kavran, J.M., Bowman, G.D., Barrick, D	+	Authors: Marold, J.D., Kavran, J.M., Bowman, G.D., Barrick, D.

	Description:		Description:

OCA at 10:08, 4 March 2015

OCA — Wed, 04 Mar 2015 10:08:04 GMT

←Older revision		Revision as of 10:08, 4 March 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4y6c is ON HOLD ~~until Paper Publication~~	+	The entry 4y6c is ON HOLD

-	Authors: Marold, J.D., Kavran, J.M., Bowman, G.D., Barrick, D.	+	Authors: Marold, J.D., Kavran, J.M., Bowman, G.D., Barrick, D

	Description:		Description:

OCA at 12:43, 25 February 2015

OCA — Wed, 25 Feb 2015 12:43:09 GMT

←Older revision		Revision as of 12:43, 25 February 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4y6c is ON HOLD	+	The entry 4y6c is ON HOLD until Paper Publication

-	Authors: Marold, J.D., Kavran, J.M., Bowman, G.D., Barrick, D	+	Authors: Marold, J.D., Kavran, J.M., Bowman, G.D., Barrick, D.

	Description:		Description:

OCA: Protected "4y6c" [edit=sysop:move=sysop]

OCA — Wed, 18 Feb 2015 12:05:25 GMT

Protected "4y6c" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:05, 18 February 2015

OCA: New page: '''Unreleased structure''' The entry 4y6c is ON HOLD Authors: Marold, J.D., Kavran, J.M., Bowman, G.D., Barrick, D Description: Category: Unreleased Structures [[Category: Marold,...

OCA — Wed, 18 Feb 2015 12:05:24 GMT

New page: '''Unreleased structure''' The entry 4y6c is ON HOLD Authors: Marold, J.D., Kavran, J.M., Bowman, G.D., Barrick, D Description: Category: Unreleased Structures [[Category: Marold,...

New page

'''Unreleased structure'''

The entry 4y6c is ON HOLD

Authors: Marold, J.D., Kavran, J.M., Bowman, G.D., Barrick, D

Description:
[[Category: Unreleased Structures]]
[[Category: Marold, J.D]]
[[Category: Bowman, G.D]]
[[Category: Barrick, D]]
[[Category: Kavran, J.M]]