4ycr - Revision history

OCA at 11:31, 9 May 2024

OCA — Thu, 09 May 2024 11:31:21 GMT

←Older revision		Revision as of 11:31, 9 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ycr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YCR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YCR FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ycr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YCR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YCR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ycr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ycr OCA], [https://pdbe.org/4ycr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ycr RCSB], [https://www.ebi.ac.uk/pdbsum/4ycr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ycr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ycr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ycr OCA], [https://pdbe.org/4ycr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ycr RCSB], [https://www.ebi.ac.uk/pdbsum/4ycr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ycr ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:08, 3 May 2023

OCA — Wed, 03 May 2023 08:08:49 GMT

←Older revision		Revision as of 08:08, 3 May 2023
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	<StructureSection load='4ycr' size='340' side='right'caption='[[4ycr]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='4ycr' size='340' side='right'caption='[[4ycr]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ycr]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Haein Haein~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YCR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4YCR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ycr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YCR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YCR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m71\|3m71]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ycr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ycr OCA], [https://pdbe.org/4ycr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ycr RCSB], [https://www.ebi.ac.uk/pdbsum/4ycr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ycr ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tehA, HI_0511 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=71421 HAEIN])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ycr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ycr OCA], [~~http~~://pdbe.org/4ycr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ycr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ycr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ycr ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/TEHA_HAEIN TEHA_HAEIN]] Ion channel involved in potassium tellurite resistance.	+	[https://www.uniprot.org/uniprot/TEHA_HAEIN TEHA_HAEIN] Ion channel involved in potassium tellurite resistance.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Haein~~]]	+	[[Category: Haemophilus influenzae Rd KW20]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Alguel, Y]]	+	[[Category: Alguel Y]]
-	[[Category: Axford, D]]	+	[[Category: Axford D]]
-	[[Category: Beis, K]]	+	[[Category: Beis K]]
-	[[Category: Choudhury~~, H G~~]]	+	[[Category: Choudhury HG]]
-	[[Category: Evans, G]]	+	[[Category: Evans G]]
-	[[Category: Foadi, J]]	+	[[Category: Foadi J]]
-	[[Category: Hu~~, N J~~]]	+	[[Category: Hu NJ]]
-	[[Category: Iwata, S]]	+	[[Category: Iwata S]]
-	~~[[Category: In situ data collection]]~~	+
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Multiple dataset]]~~	+
-	~~[[Category: Synchrotron beamline~~]]	+

OCA at 06:55, 12 June 2019

OCA — Wed, 12 Jun 2019 06:55:56 GMT

←Older revision		Revision as of 06:55, 12 June 2019
Line 1:		Line 1:

	==Structure determination of an integral membrane protein at room temperature from crystals in situ==		==Structure determination of an integral membrane protein at room temperature from crystals in situ==
-	<StructureSection load='4ycr' size='340' side='right' caption='[[4ycr]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='4ycr' size='340' side='right'caption='[[4ycr]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ycr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YCR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YCR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ycr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YCR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YCR FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m71\|3m71]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m71\|3m71]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tehA, HI_0511 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=71421 HAEIN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ycr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ycr OCA], [http://pdbe.org/4ycr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ycr RCSB], [http://www.ebi.ac.uk/pdbsum/4ycr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ycr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ycr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ycr OCA], [http://pdbe.org/4ycr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ycr RCSB], [http://www.ebi.ac.uk/pdbsum/4ycr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ycr ProSAT]</span></td></tr>
	</table>		</table>
Line 23:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Haein]]
		+	[[Category: Large Structures]]
	[[Category: Alguel, Y]]		[[Category: Alguel, Y]]
	[[Category: Axford, D]]		[[Category: Axford, D]]

OCA at 17:09, 22 March 2017

OCA — Wed, 22 Mar 2017 17:09:10 GMT

←Older revision		Revision as of 17:09, 22 March 2017
Line 1:		Line 1:
		+
	==Structure determination of an integral membrane protein at room temperature from crystals in situ==		==Structure determination of an integral membrane protein at room temperature from crystals in situ==
	<StructureSection load='4ycr' size='340' side='right' caption='[[4ycr]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='4ycr' size='340' side='right' caption='[[4ycr]], [[Resolution\|resolution]] 2.30Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m71\|3m71]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m71\|3m71]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ycr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ycr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ycr RCSB], [http://www.ebi.ac.uk/pdbsum/4ycr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ycr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ycr OCA], [http://pdbe.org/4ycr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ycr RCSB], [http://www.ebi.ac.uk/pdbsum/4ycr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ycr ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4ycr" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 09:09, 17 June 2015

OCA — Wed, 17 Jun 2015 09:09:00 GMT

←Older revision		Revision as of 09:09, 17 June 2015
Line 9:		Line 9:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/TEHA_HAEIN TEHA_HAEIN]] Ion channel involved in potassium tellurite resistance.		[[http://www.uniprot.org/uniprot/TEHA_HAEIN TEHA_HAEIN]] Ion channel involved in potassium tellurite resistance.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure determination of an integral membrane protein using synchrotron X-ray diffraction data collected at room temperature directly in vapour-diffusion crystallization plates (in situ) is demonstrated. Exposing the crystals in situ eliminates manual sample handling and, since it is performed at room temperature, removes the complication of cryoprotection and potential structural anomalies induced by sample cryocooling. Essential to the method is the ability to limit radiation damage by recording a small amount of data per sample from many samples and subsequently assembling the resulting data sets using specialized software. The validity of this procedure is established by the structure determination of Haemophilus influenza TehA at 2.3 A resolution. The method presented offers an effective protocol for the fast and efficient determination of membrane-protein structures at room temperature using third-generation synchrotron beamlines.
		+
		+	Structure determination of an integral membrane protein at room temperature from crystals in situ.,Axford D, Foadi J, Hu NJ, Choudhury HG, Iwata S, Beis K, Evans G, Alguel Y Acta Crystallogr D Biol Crystallogr. 2015 Jun;71(Pt 6):1228-37. doi:, 10.1107/S139900471500423X. Epub 2015 May 14. PMID:26057664<ref>PMID:26057664</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 12:47, 3 June 2015

OCA — Wed, 03 Jun 2015 12:47:02 GMT

←Older revision		Revision as of 12:47, 3 June 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Structure determination of an integral membrane protein at room temperature from crystals in situ==
-		+	<StructureSection load='4ycr' size='340' side='right' caption='[[4ycr]], [[Resolution\|resolution]] 2.30Å' scene=''>
-	~~The entry~~ 4ycr is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4ycr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YCR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YCR FirstGlance]. <br>
-	~~Authors~~: ~~Axford, D~~.~~, Hu, N~~.J.~~, Foadi, J~~.~~, Choudhury, H~~.G.~~, Iwata, S~~.~~, Beis, K~~.~~, Evans, G., Alguel, Y~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m71\|3m71]]</td></tr>
-	~~Description~~: ~~Structure determination of an integral membrane protein at room temperature from crystals in situ~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ycr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ycr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ycr RCSB], [http://www.ebi.ac.uk/pdbsum/4ycr PDBsum]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[~~Category~~: ~~Choudhury~~, H.G]]	+	== Function ==
		+	[[http://www.uniprot.org/uniprot/TEHA_HAEIN TEHA_HAEIN]] Ion channel involved in potassium tellurite resistance.
		+	__TOC__
		+	</StructureSection>
	[[Category: Alguel, Y]]		[[Category: Alguel, Y]]
-	[[Category: Foadi, J]]
-	[[Category: Iwata, S]]
-	[[Category: Evans, G]]
	[[Category: Axford, D]]		[[Category: Axford, D]]
	[[Category: Beis, K]]		[[Category: Beis, K]]
-	[[Category: Hu, N.J]]	+	[[Category: Choudhury, H G]]
		+	[[Category: Evans, G]]
		+	[[Category: Foadi, J]]
		+	[[Category: Hu, N J]]
		+	[[Category: Iwata, S]]
		+	[[Category: In situ data collection]]
		+	[[Category: Membrane protein]]
		+	[[Category: Multiple dataset]]
		+	[[Category: Synchrotron beamline]]

OCA: Protected "4ycr" [edit=sysop:move=sysop]

OCA — Wed, 04 Mar 2015 10:18:41 GMT

Protected "4ycr" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:18, 4 March 2015

OCA: New page: '''Unreleased structure''' The entry 4ycr is ON HOLD Authors: Axford, D., Hu, N.J., Foadi, J., Choudhury, H.G., Iwata, S., Beis, K., Evans, G., Alguel, Y. Description: Structure determ...

OCA — Wed, 04 Mar 2015 10:18:40 GMT

New page: '''Unreleased structure''' The entry 4ycr is ON HOLD Authors: Axford, D., Hu, N.J., Foadi, J., Choudhury, H.G., Iwata, S., Beis, K., Evans, G., Alguel, Y. Description: Structure determ...

New page

'''Unreleased structure'''

The entry 4ycr is ON HOLD

Authors: Axford, D., Hu, N.J., Foadi, J., Choudhury, H.G., Iwata, S., Beis, K., Evans, G., Alguel, Y.

Description: Structure determination of an integral membrane protein at room temperature from crystals in situ
[[Category: Unreleased Structures]]
[[Category: Choudhury, H.G]]
[[Category: Alguel, Y]]
[[Category: Foadi, J]]
[[Category: Iwata, S]]
[[Category: Evans, G]]
[[Category: Axford, D]]
[[Category: Beis, K]]
[[Category: Hu, N.J]]