4yds - Revision history

OCA at 07:57, 27 September 2023

OCA — Wed, 27 Sep 2023 07:57:46 GMT

←Older revision		Revision as of 07:57, 27 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4yds]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius_DSM_639 Sulfolobus acidocaldarius DSM 639]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YDS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YDS FirstGlance]. <br>		<table><tr><td colspan='2'>[[4yds]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius_DSM_639 Sulfolobus acidocaldarius DSM 639]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YDS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YDS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yds FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yds OCA], [https://pdbe.org/4yds PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yds RCSB], [https://www.ebi.ac.uk/pdbsum/4yds PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yds ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yds FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yds OCA], [https://pdbe.org/4yds PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yds RCSB], [https://www.ebi.ac.uk/pdbsum/4yds PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yds ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:10, 3 May 2023

OCA — Wed, 03 May 2023 08:10:16 GMT

←Older revision		Revision as of 08:10, 3 May 2023
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	<StructureSection load='4yds' size='340' side='right'caption='[[4yds]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='4yds' size='340' side='right'caption='[[4yds]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4yds]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Sulac Sulac~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YDS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4YDS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4yds]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius_DSM_639 Sulfolobus acidocaldarius DSM 639]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YDS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YDS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dr3\|2dr3]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yds FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yds OCA], [https://pdbe.org/4yds PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yds RCSB], [https://www.ebi.ac.uk/pdbsum/4yds PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yds ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Saci_1174 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=330779 SULAC])</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosinetriphosphatase Adenosinetriphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.3 3.6.1.3] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4yds FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yds OCA], [~~http~~://pdbe.org/4yds PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4yds RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4yds PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4yds ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q4J9K9_SULAC Q4J9K9_SULAC]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Adenosinetriphosphatase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Sulac~~]]	+	[[Category: Sulfolobus acidocaldarius DSM 639]]
-	[[Category: Arvai~~, A S~~]]	+	[[Category: Arvai AS]]
-	[[Category: Reindl, S]]	+	[[Category: Reindl S]]
-	[[Category: Tainer~~, J A]]~~	+	[[Category: Tainer JA]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Reca superfamily atpase~~]]	+

OCA at 08:45, 4 December 2019

OCA — Wed, 04 Dec 2019 08:45:52 GMT

←Older revision		Revision as of 08:45, 4 December 2019
Line 1:		Line 1:

	==FlaH from Sulfolobus acidocaldarius with ATP and Mg-Ion==		==FlaH from Sulfolobus acidocaldarius with ATP and Mg-Ion==
-	<StructureSection load='4yds' size='340' side='right' caption='[[4yds]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='4yds' size='340' side='right'caption='[[4yds]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4yds]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulac Sulac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YDS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YDS FirstGlance]. <br>		<table><tr><td colspan='2'>[[4yds]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulac Sulac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YDS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YDS FirstGlance]. <br>
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Adenosinetriphosphatase]]		[[Category: Adenosinetriphosphatase]]
		+	[[Category: Large Structures]]
	[[Category: Sulac]]		[[Category: Sulac]]
	[[Category: Arvai, A S]]		[[Category: Arvai, A S]]

OCA at 15:45, 15 November 2017

OCA — Wed, 15 Nov 2017 15:45:33 GMT

←Older revision		Revision as of 15:45, 15 November 2017
Line 3:		Line 3:
	<StructureSection load='4yds' size='340' side='right' caption='[[4yds]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='4yds' size='340' side='right' caption='[[4yds]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4yds]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YDS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YDS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4yds]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulac Sulac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YDS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YDS FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dr3\|2dr3]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dr3\|2dr3]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Saci_1174 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=330779 SULAC])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosinetriphosphatase Adenosinetriphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.3 3.6.1.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosinetriphosphatase Adenosinetriphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.3 3.6.1.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yds FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yds OCA], [http://pdbe.org/4yds PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yds RCSB], [http://www.ebi.ac.uk/pdbsum/4yds PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yds FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yds OCA], [http://pdbe.org/4yds PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yds RCSB], [http://www.ebi.ac.uk/pdbsum/4yds PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yds ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 23:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Adenosinetriphosphatase]]		[[Category: Adenosinetriphosphatase]]
		+	[[Category: Sulac]]
	[[Category: Arvai, A S]]		[[Category: Arvai, A S]]
	[[Category: Reindl, S]]		[[Category: Reindl, S]]

OCA at 10:22, 26 February 2016

OCA — Fri, 26 Feb 2016 10:22:12 GMT

←Older revision		Revision as of 10:22, 26 February 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 4yds is ~~ON HOLD until Paper~~ Publication	+	==FlaH from Sulfolobus acidocaldarius with ATP and Mg-Ion==
		+	<StructureSection load='4yds' size='340' side='right' caption='[[4yds]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4yds]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YDS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YDS FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dr3\|2dr3]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosinetriphosphatase Adenosinetriphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.3 3.6.1.3] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yds FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yds OCA], [http://pdbe.org/4yds PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yds RCSB], [http://www.ebi.ac.uk/pdbsum/4yds PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The motor of the membrane-anchored archaeal motility structure, the archaellum, contains FlaX, FlaI and FlaH. FlaX forms a 30 nm ring structure that acts as a scaffold protein and was shown to interact with the bifunctional ATPase FlaI and FlaH. However, the structure and function of FlaH has been enigmatic. Here we present structural and functional analyses of isolated FlaH and archaellum motor subcomplexes. The FlaH crystal structure reveals a RecA/Rad51 family fold with an ATP bound on a conserved and exposed surface, which presumably forms an oligomerization interface. FlaH does not hydrolyze ATP in vitro, but ATP binding to FlaH is essential for its interaction with FlaI and for archaellum assembly. FlaH interacts with the C-terminus of FlaX, which was earlier shown to be essential for FlaX ring formation and to mediate interaction with FlaI. Electron microscopy reveals that FlaH assembles as a second ring inside the FlaX ring in vitro. Collectively these data reveal central structural mechanisms for FlaH interactions in mediating archaellar assembly: FlaH binding within the FlaX ring and nucleotide-regulated FlaH binding to FlaI form the archaellar basal body core.

-	~~Authors: Reindl, S~~., ~~Arvai~~, A.S., Tainer, J.A.	+	The nucleotide-dependent interaction of FlaH and FlaI is essential for assembly and function of the archaellum motor.,Chaudhury P, Neiner T, D'Imprima E, Banerjee A, Reindl S, Ghosh A, Arvai AS, Mills DJ, van der Does C, Tainer JA, Vonck J, Albers SV Mol Microbiol. 2016 Feb;99(4):674-85. doi: 10.1111/mmi.13260. Epub 2015 Nov 17. PMID:26508112<ref>PMID:26508112</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 4yds" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Adenosinetriphosphatase]]
		+	[[Category: Arvai, A S]]
	[[Category: Reindl, S]]		[[Category: Reindl, S]]
-	[[Category: Tainer, J.A]]	+	[[Category: Tainer, J A]]
-	[[Category: ~~Arvai, A.S~~]]	+	[[Category: Hydrolase]]
		+	[[Category: Reca superfamily atpase]]

OCA at 10:49, 22 April 2015

OCA — Wed, 22 Apr 2015 10:49:26 GMT

←Older revision		Revision as of 10:49, 22 April 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4yds is ON HOLD	+	The entry 4yds is ON HOLD until Paper Publication

	Authors: Reindl, S., Arvai, A.S., Tainer, J.A.		Authors: Reindl, S., Arvai, A.S., Tainer, J.A.

OCA: Protected "4yds" [edit=sysop:move=sysop]

OCA — Wed, 04 Mar 2015 10:20:59 GMT

Protected "4yds" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:20, 4 March 2015

OCA: New page: '''Unreleased structure''' The entry 4yds is ON HOLD Authors: Reindl, S., Arvai, A.S., Tainer, J.A. Description: Category: Unreleased Structures Category: Reindl, S [[Category...

OCA — Wed, 04 Mar 2015 10:20:58 GMT

New page: '''Unreleased structure''' The entry 4yds is ON HOLD Authors: Reindl, S., Arvai, A.S., Tainer, J.A. Description: Category: Unreleased Structures Category: Reindl, S [[Category...

New page

'''Unreleased structure'''

The entry 4yds is ON HOLD

Authors: Reindl, S., Arvai, A.S., Tainer, J.A.

Description:
[[Category: Unreleased Structures]]
[[Category: Reindl, S]]
[[Category: Tainer, J.A]]
[[Category: Arvai, A.S]]