4yp9 - Revision history

OCA at 10:55, 10 January 2024

OCA — Wed, 10 Jan 2024 10:55:52 GMT

←Older revision		Revision as of 10:55, 10 January 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4yp9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_harveyi Vibrio harveyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YP9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4yp9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_harveyi Vibrio harveyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YP9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1B:1-DEOXY-ALPHA-L-XYLULOFURANOSE-1,2-BORATE'>A1B</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1B:1-DEOXY-ALPHA-L-XYLULOFURANOSE-1,2-BORATE'>A1B</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yp9 OCA], [https://pdbe.org/4yp9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yp9 RCSB], [https://www.ebi.ac.uk/pdbsum/4yp9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yp9 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yp9 OCA], [https://pdbe.org/4yp9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yp9 RCSB], [https://www.ebi.ac.uk/pdbsum/4yp9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yp9 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:23, 3 May 2023

OCA — Wed, 03 May 2023 08:23:53 GMT

←Older revision		Revision as of 08:23, 3 May 2023
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	<StructureSection load='4yp9' size='340' side='right'caption='[[4yp9]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='4yp9' size='340' side='right'caption='[[4yp9]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4yp9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YP9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4YP9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4yp9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_harveyi Vibrio harveyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YP9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A1B:1-DEOXY-ALPHA-L-XYLULOFURANOSE-1,2-BORATE'>A1B</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1B:1-DEOXY-ALPHA-L-XYLULOFURANOSE-1,2-BORATE'>A1B</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jx6\|1jx6]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yp9 OCA], [https://pdbe.org/4yp9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yp9 RCSB], [https://www.ebi.ac.uk/pdbsum/4yp9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yp9 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4yp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yp9 OCA], [~~http~~://pdbe.org/4yp9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4yp9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4yp9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4yp9 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LUXP_VIBHA LUXP_VIBHA]] Binds to the signaling molecule autoinducer 2 (AI-2), a furanosyl borate diester, (3a-methyl-5,6-dihydrofuro-[2,3d][1,3,2]dioxaborole-2,2,6,6a-tetraol). This complex then interacts with the LuxQ sensor protein.	+	[https://www.uniprot.org/uniprot/LUXP_VIBHA LUXP_VIBHA] Binds to the signaling molecule autoinducer 2 (AI-2), a furanosyl borate diester, (3a-methyl-5,6-dihydrofuro-[2,3d][1,3,2]dioxaborole-2,2,6,6a-tetraol). This complex then interacts with the LuxQ sensor protein.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Davis~~, B G~~]]	+	[[Category: Vibrio harveyi]]
-	[[Category: Gardner~~, P M~~]]	+	[[Category: Davis BG]]
-	[[Category: Liu, C]]	+	[[Category: Gardner PM]]
-	[[Category: McDonough~~, M A~~]]	+	[[Category: Liu C]]
-	[[Category: Sattin, S]]	+	[[Category: McDonough MA]]
-	~~[[Category: Protein binding]]~~	+	[[Category: Sattin S]]
-	~~[[Category: Protein-ligand complex]]~~	+
-	~~[[Category: Quorum sensing~~]]	+

OCA at 07:11, 10 July 2019

OCA — Wed, 10 Jul 2019 07:11:35 GMT

←Older revision		Revision as of 07:11, 10 July 2019
Line 1:		Line 1:

	==Crystal Structure of LuxP In Complex With a Formose Derived AI-2 Analogue==		==Crystal Structure of LuxP In Complex With a Formose Derived AI-2 Analogue==
-	<StructureSection load='4yp9' size='340' side='right' caption='[[4yp9]], [[Resolution\|resolution]] 2.70Å' scene=''>	+	<StructureSection load='4yp9' size='340' side='right'caption='[[4yp9]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4yp9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YP9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4yp9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YP9 FirstGlance]. <br>
Line 12:		Line 12:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Davis, B G]]		[[Category: Davis, B G]]
	[[Category: Gardner, P M]]		[[Category: Gardner, P M]]

OCA at 06:15, 6 October 2017

OCA — Fri, 06 Oct 2017 06:15:36 GMT

←Older revision		Revision as of 06:15, 6 October 2017
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4yp9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YP9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4yp9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YP9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~4EX~~:1-DEOXY-~~2,3-O-(DIHYDROXYMETHYLIDENE)-BETA~~-L-XYLULOFURANOSE'>~~4EX~~</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A1B:1-DEOXY-ALPHA-L-XYLULOFURANOSE-1,2-BORATE'>A1B</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jx6\|1jx6]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jx6\|1jx6]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yp9 OCA], [http://pdbe.org/4yp9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yp9 RCSB], [http://www.ebi.ac.uk/pdbsum/4yp9 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yp9 OCA], [http://pdbe.org/4yp9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yp9 RCSB], [http://www.ebi.ac.uk/pdbsum/4yp9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yp9 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 12:56, 11 May 2016

OCA — Wed, 11 May 2016 12:56:30 GMT

←Older revision		Revision as of 12:56, 11 May 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 4yp9 is ~~ON HOLD~~	+	==Crystal Structure of LuxP In Complex With a Formose Derived AI-2 Analogue==
-		+	<StructureSection load='4yp9' size='340' side='right' caption='[[4yp9]], [[Resolution\|resolution]] 2.70Å' scene=''>
-	~~Authors~~: ~~McDonough~~, M.A., ~~Sattin~~, S., ~~Gardner, P~~.M., ~~Liu~~, C., Davis, B.G.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4yp9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YP9 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4EX:1-DEOXY-2,3-O-(DIHYDROXYMETHYLIDENE)-BETA-L-XYLULOFURANOSE'>4EX</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jx6\|1jx6]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yp9 OCA], [http://pdbe.org/4yp9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yp9 RCSB], [http://www.ebi.ac.uk/pdbsum/4yp9 PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LUXP_VIBHA LUXP_VIBHA]] Binds to the signaling molecule autoinducer 2 (AI-2), a furanosyl borate diester, (3a-methyl-5,6-dihydrofuro-[2,3d][1,3,2]dioxaborole-2,2,6,6a-tetraol). This complex then interacts with the LuxQ sensor protein.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Davis, B G]]
		+	[[Category: Gardner, P M]]
		+	[[Category: Liu, C]]
		+	[[Category: McDonough, M A]]
	[[Category: Sattin, S]]		[[Category: Sattin, S]]
-	[[Category: ~~Liu, C~~]]	+	[[Category: Protein binding]]
-	[[Category: ~~Gardner, P.M~~]]	+	[[Category: Protein-ligand complex]]
-	[[Category: ~~Davis, B.G]]~~	+	[[Category: Quorum sensing]]
-	~~[[Category: Mcdonough, M.A~~]]	+

OCA at 23:40, 30 November 2015

OCA — Mon, 30 Nov 2015 23:40:40 GMT

←Older revision		Revision as of 23:40, 30 November 2015
Line 7:		Line 7:
	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Sattin, S]]
	[[Category: Liu, C]]		[[Category: Liu, C]]
		+	[[Category: Gardner, P.M]]
	[[Category: Davis, B.G]]		[[Category: Davis, B.G]]
	[[Category: Mcdonough, M.A]]		[[Category: Mcdonough, M.A]]
-	[[Category: Sattin, S]]
-	[[Category: Gardner, P.M]]

OCA: Protected "4yp9" [edit=sysop:move=sysop]

OCA — Wed, 18 Mar 2015 10:59:49 GMT

Protected "4yp9" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:59, 18 March 2015

OCA: New page: '''Unreleased structure''' The entry 4yp9 is ON HOLD Authors: McDonough, M.A., Sattin, S., Gardner, P.M., Liu, C., Davis, B.G. Description: Category: Unreleased Structures [[Categ...

OCA — Wed, 18 Mar 2015 10:59:48 GMT

New page: '''Unreleased structure''' The entry 4yp9 is ON HOLD Authors: McDonough, M.A., Sattin, S., Gardner, P.M., Liu, C., Davis, B.G. Description: Category: Unreleased Structures [[Categ...

New page

'''Unreleased structure'''

The entry 4yp9 is ON HOLD

Authors: McDonough, M.A., Sattin, S., Gardner, P.M., Liu, C., Davis, B.G.

Description:
[[Category: Unreleased Structures]]
[[Category: Liu, C]]
[[Category: Davis, B.G]]
[[Category: Mcdonough, M.A]]
[[Category: Sattin, S]]
[[Category: Gardner, P.M]]