4zb0 - Revision history

OCA at 10:58, 10 January 2024

OCA — Wed, 10 Jan 2024 10:58:44 GMT

←Older revision		Revision as of 10:58, 10 January 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4zb0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZB0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4zb0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZB0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zb0 OCA], [https://pdbe.org/4zb0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zb0 RCSB], [https://www.ebi.ac.uk/pdbsum/4zb0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zb0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zb0 OCA], [https://pdbe.org/4zb0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zb0 RCSB], [https://www.ebi.ac.uk/pdbsum/4zb0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zb0 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 07:47, 10 May 2023

OCA — Wed, 10 May 2023 07:47:15 GMT

←Older revision		Revision as of 07:47, 10 May 2023
Line 3:		Line 3:
	<StructureSection load='4zb0' size='340' side='right'caption='[[4zb0]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='4zb0' size='340' side='right'caption='[[4zb0]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4zb0]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"actinomyces_rubiginosus"_preobrazhenskaya_et_al._in_gauze_et_al._1957 "actinomyces~~ rubiginosus~~" preobrazhenskaya et al. in gauze et al. 1957~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZB0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ZB0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4zb0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZB0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4zb2\|4zb2]], [[4zb5\|4zb5]], [[4zbc\|4zbc]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zb0 OCA], [https://pdbe.org/4zb0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zb0 RCSB], [https://www.ebi.ac.uk/pdbsum/4zb0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zb0 ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xylA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1929 "Actinomyces rubiginosus" Preobrazhenskaya et al. in Gauze et al. 1957])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4zb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zb0 OCA], [~~http~~://pdbe.org/4zb0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4zb0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4zb0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4zb0 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU]] Involved in D-xylose catabolism.	+	[https://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU] Involved in D-xylose catabolism.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Actinomyces rubiginosus preobrazhenskaya et al. in gauze et al. 1957]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Xylose isomerase~~]]	+	[[Category: Streptomyces rubiginosus]]
-	[[Category: Sandy, J]]	+	[[Category: Sandy J]]
-	~~[[Category: Isomerase~~]]	+

OCA at 07:02, 19 June 2019

OCA — Wed, 19 Jun 2019 07:02:01 GMT

←Older revision		Revision as of 07:02, 19 June 2019
Line 1:		Line 1:

	==A dehydrated form of glucose isomerase collected at room temperature.==		==A dehydrated form of glucose isomerase collected at room temperature.==
-	<StructureSection load='4zb0' size='340' side='right' caption='[[4zb0]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='4zb0' size='340' side='right'caption='[[4zb0]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4zb0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZB0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZB0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4zb0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_rubiginosus"_preobrazhenskaya_et_al._in_gauze_et_al._1957 "actinomyces rubiginosus" preobrazhenskaya et al. in gauze et al. 1957]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZB0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZB0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4zb2\|4zb2]], [[4zb5\|4zb5]], [[4zbc\|4zbc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4zb2\|4zb2]], [[4zb5\|4zb5]], [[4zbc\|4zbc]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xylA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1929 "Actinomyces rubiginosus" Preobrazhenskaya et al. in Gauze et al. 1957])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zb0 OCA], [http://pdbe.org/4zb0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zb0 RCSB], [http://www.ebi.ac.uk/pdbsum/4zb0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zb0 OCA], [http://pdbe.org/4zb0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zb0 RCSB], [http://www.ebi.ac.uk/pdbsum/4zb0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zb0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Actinomyces rubiginosus preobrazhenskaya et al. in gauze et al. 1957]]
		+	[[Category: Large Structures]]
	[[Category: Xylose isomerase]]		[[Category: Xylose isomerase]]
	[[Category: Sandy, J]]		[[Category: Sandy, J]]
	[[Category: Isomerase]]		[[Category: Isomerase]]

OCA at 05:25, 11 May 2016

OCA — Wed, 11 May 2016 05:25:29 GMT

←Older revision		Revision as of 05:25, 11 May 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 4zb0 is ~~ON HOLD until Paper~~ Publication	+	==A dehydrated form of glucose isomerase collected at room temperature.==
		+	<StructureSection load='4zb0' size='340' side='right' caption='[[4zb0]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4zb0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZB0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZB0 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4zb2\|4zb2]], [[4zb5\|4zb5]], [[4zbc\|4zbc]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zb0 OCA], [http://pdbe.org/4zb0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zb0 RCSB], [http://www.ebi.ac.uk/pdbsum/4zb0 PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU]] Involved in D-xylose catabolism.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Dehydration may change the crystal lattice and affect the mosaicity, resolution and quality of X-ray diffraction data. A dehydrating environment can be generated around a crystal in several ways with various degrees of precision and complexity. This study uses a high-precision crystal humidifier/dehumidifier to provide an airstream of known relative humidity in which the crystals are mounted: a precise yet hassle-free approach to altering crystal hydration. A protocol is introduced to assess the impact of crystal dehydration systematically applied to nine experimental crystal systems. In one case, that of glucose isomerase, dehydration triggering a change of space group from I222 to P21212 was observed. This observation is supported by an extended study of the behaviour of the glucose isomerase crystal structure during crystal dehydration.

-	~~Authors:~~ Sandy, J.	+	A generic protocol for protein crystal dehydration using the HC1b humidity controller.,Lobley CM, Sandy J, Sanchez-Weatherby J, Mazzorana M, Krojer T, Nowak RP, Sorensen TL Acta Crystallogr D Struct Biol. 2016 May 1;72(Pt 5):629-40. doi:, 10.1107/S2059798316003065. Epub 2016 Apr 26. PMID:27139626<ref>PMID:27139626</ref>

-	~~Description: A dehydrated form~~ of ~~glucose isomerase collected at room temperature~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 4zb0" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Xylose isomerase]]
	[[Category: Sandy, J]]		[[Category: Sandy, J]]
		+	[[Category: Isomerase]]

OCA: Protected "4zb0" [edit=sysop:move=sysop]

OCA — Wed, 22 Apr 2015 11:39:43 GMT

Protected "4zb0" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:39, 22 April 2015

OCA: New page: '''Unreleased structure''' The entry 4zb0 is ON HOLD until Paper Publication Authors: Sandy, J. Description: A dehydrated form of glucose isomerase collected at room temperature. [[Cat...

OCA — Wed, 22 Apr 2015 11:39:42 GMT

New page: '''Unreleased structure''' The entry 4zb0 is ON HOLD until Paper Publication Authors: Sandy, J. Description: A dehydrated form of glucose isomerase collected at room temperature. [[Cat...

New page

'''Unreleased structure'''

The entry 4zb0 is ON HOLD until Paper Publication

Authors: Sandy, J.

Description: A dehydrated form of glucose isomerase collected at room temperature.
[[Category: Unreleased Structures]]
[[Category: Sandy, J]]