4zxr - Revision history

OCA at 11:01, 10 January 2024

OCA — Wed, 10 Jan 2024 11:01:29 GMT

←Older revision		Revision as of 11:01, 10 January 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4zxr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZXR FirstGlance]. <br>		<table><tr><td colspan='2'>[[4zxr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZXR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.92Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zxr OCA], [https://pdbe.org/4zxr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zxr RCSB], [https://www.ebi.ac.uk/pdbsum/4zxr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zxr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zxr OCA], [https://pdbe.org/4zxr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zxr RCSB], [https://www.ebi.ac.uk/pdbsum/4zxr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zxr ProSAT]</span></td></tr>
	</table>		</table>

OCA at 07:45, 18 May 2023

OCA — Thu, 18 May 2023 07:45:56 GMT

←Older revision		Revision as of 07:45, 18 May 2023
Line 3:		Line 3:
	<StructureSection load='4zxr' size='340' side='right'caption='[[4zxr]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='4zxr' size='340' side='right'caption='[[4zxr]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4zxr]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZXR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ZXR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4zxr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZXR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1thw\|1thw]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zxr OCA], [https://pdbe.org/4zxr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zxr RCSB], [https://www.ebi.ac.uk/pdbsum/4zxr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zxr ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4zxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zxr OCA], [~~http~~://pdbe.org/4zxr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4zxr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4zxr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4zxr ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.	+	[https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 24:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
-	[[Category: Aller, P]]	+	[[Category: Aller P]]
-	[[Category: Evans, G]]	+	[[Category: Evans G]]
-	[[Category: Trincao, J]]	+	[[Category: Trincao J]]
-	[[Category: Warren~~, A J]]~~	+	[[Category: Warren AJ]]
-	~~[[Category: Graphene]]~~	+
-	~~[[Category: Graphene-wrapped protein crystal]]~~	+
-	~~[[Category: Plant protein]]~~	+
-	~~[[Category: Thaumatin]]~~	+
-	~~[[Category: Vacuum~~]]	+

OCA at 08:34, 26 June 2019

OCA — Wed, 26 Jun 2019 08:34:30 GMT

←Older revision		Revision as of 08:34, 26 June 2019
Line 1:		Line 1:
		+
	==Structure of Thaumatin wrapped in graphene within vacuum==		==Structure of Thaumatin wrapped in graphene within vacuum==
-	<StructureSection load='4zxr' size='340' side='right' caption='[[4zxr]], [[Resolution\|resolution]] 1.92Å' scene=''>	+	<StructureSection load='4zxr' size='340' side='right'caption='[[4zxr]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4zxr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZXR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZXR FirstGlance]. <br>		<table><tr><td colspan='2'>[[4zxr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZXR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZXR FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1thw\|1thw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1thw\|1thw]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zxr OCA], [http://pdbe.org/4zxr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zxr RCSB], [http://www.ebi.ac.uk/pdbsum/4zxr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zxr OCA], [http://pdbe.org/4zxr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zxr RCSB], [http://www.ebi.ac.uk/pdbsum/4zxr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zxr ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
	[[Category: Aller, P]]		[[Category: Aller, P]]

OCA at 20:59, 30 November 2015

OCA — Mon, 30 Nov 2015 20:59:38 GMT

←Older revision		Revision as of 20:59, 30 November 2015
Line 9:		Line 9:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.		[[http://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The measurement of diffraction data from macromolecular crystal samples held in vacuo holds the promise of a very low X-ray background and zero absorption of incident and scattered beams, leading to better data and the potential for accessing very long X-ray wavelengths (>3 A) for native sulfur phasing. Maintaining the hydration of protein crystals under vacuum is achieved by the use of liquid jets, as with serial data collection at free-electron lasers, or is side-stepped by cryocooling the samples, as implemented at new synchrotron beamlines. Graphene has been shown to protect crystals from dehydration by creating an extremely thin layer that is impermeable to any exchanges with the environment. Furthermore, owing to its hydrophobicity, most of the aqueous solution surrounding the crystal is excluded during sample preparation, thus eliminating most of the background caused by liquid. Here, it is shown that high-quality data can be recorded at room temperature from graphene-wrapped protein crystals in a rough vacuum. Furthermore, it was observed that graphene protects crystals exposed to different relative humidities and a chemically harsh environment.
		+
		+	In vacuo X-ray data collection from graphene-wrapped protein crystals.,Warren AJ, Crawshaw AD, Trincao J, Aller P, Alcock S, Nistea I, Salgado PS, Evans G Acta Crystallogr D Biol Crystallogr. 2015 Oct 1;71(Pt 10):2079-88. doi:, 10.1107/S1399004715014194. Epub 2015 Sep 26. PMID:26457431<ref>PMID:26457431</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 4zxr" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 04:05, 16 October 2015

OCA — Fri, 16 Oct 2015 04:05:53 GMT

←Older revision		Revision as of 04:05, 16 October 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Structure of Thaumatin wrapped in graphene within vacuum==
-		+	<StructureSection load='4zxr' size='340' side='right' caption='[[4zxr]], [[Resolution\|resolution]] 1.92Å' scene=''>
-	~~The entry~~ 4zxr is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4zxr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZXR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZXR FirstGlance]. <br>
-	~~Authors~~: ~~Aller~~, P., ~~Warren, A~~.J., ~~Trincao, J~~., ~~Evans~~, G.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1thw\|1thw]]</td></tr>
-	~~Description: Structure of Thaumatin wrapped in graphene within vacuum~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zxr OCA], [http://pdbe.org/4zxr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zxr RCSB], [http://www.ebi.ac.uk/pdbsum/4zxr PDBsum]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: ~~Evans, G~~]]	+	== Function ==
		+	[[http://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Thaumatococcus daniellii]]
	[[Category: Aller, P]]		[[Category: Aller, P]]
-	[[Category: ~~Warren~~, ~~A.J~~]]	+	[[Category: Evans, G]]
	[[Category: Trincao, J]]		[[Category: Trincao, J]]
		+	[[Category: Warren, A J]]
		+	[[Category: Graphene]]
		+	[[Category: Graphene-wrapped protein crystal]]
		+	[[Category: Plant protein]]
		+	[[Category: Thaumatin]]
		+	[[Category: Vacuum]]

OCA: Protected "4zxr" [edit=sysop:move=sysop]

OCA — Wed, 27 May 2015 14:53:00 GMT

Protected "4zxr" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:53, 27 May 2015

OCA: New page: '''Unreleased structure''' The entry 4zxr is ON HOLD Authors: Aller, P., Warren, A.J., Trincao, J., Evans, G. Description: Structure of Thaumatin wrapped in graphene within vacuum [[Ca...

OCA — Wed, 27 May 2015 14:52:59 GMT

New page: '''Unreleased structure''' The entry 4zxr is ON HOLD Authors: Aller, P., Warren, A.J., Trincao, J., Evans, G. Description: Structure of Thaumatin wrapped in graphene within vacuum [[Ca...

New page

'''Unreleased structure'''

The entry 4zxr is ON HOLD

Authors: Aller, P., Warren, A.J., Trincao, J., Evans, G.

Description: Structure of Thaumatin wrapped in graphene within vacuum
[[Category: Unreleased Structures]]
[[Category: Evans, G]]
[[Category: Aller, P]]
[[Category: Warren, A.J]]
[[Category: Trincao, J]]