4zzf - Revision history

OCA at 11:34, 9 May 2024

OCA — Thu, 09 May 2024 11:34:31 GMT

←Older revision		Revision as of 11:34, 9 May 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4zzf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZZF FirstGlance]. <br>		<table><tr><td colspan='2'>[[4zzf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZZF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zzf OCA], [https://pdbe.org/4zzf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zzf RCSB], [https://www.ebi.ac.uk/pdbsum/4zzf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zzf ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1673Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zzf OCA], [https://pdbe.org/4zzf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zzf RCSB], [https://www.ebi.ac.uk/pdbsum/4zzf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zzf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 07:47, 18 May 2023

OCA — Thu, 18 May 2023 07:47:42 GMT

←Older revision		Revision as of 07:47, 18 May 2023
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	<StructureSection load='4zzf' size='340' side='right'caption='[[4zzf]], [[Resolution\|resolution]] 2.17Å' scene=''>		<StructureSection load='4zzf' size='340' side='right'caption='[[4zzf]], [[Resolution\|resolution]] 2.17Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4zzf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Campylobacter_pylori Campylobacter~~ pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZZF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ZZF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4zzf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZZF FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flgD, C694_04670, HP_0907 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=85962 Campylobacter pylori])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zzf OCA], [https://pdbe.org/4zzf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zzf RCSB], [https://www.ebi.ac.uk/pdbsum/4zzf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zzf ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4zzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zzf OCA], [~~http~~://pdbe.org/4zzf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4zzf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4zzf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4zzf ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/O25565_HELPY O25565_HELPY]] Required for flagellar hook formation. May act as a scaffolding protein.[RuleBase:RU362076]	+	[https://www.uniprot.org/uniprot/O25565_HELPY O25565_HELPY] Required for flagellar hook formation. May act as a scaffolding protein.[RuleBase:RU362076]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 18:		Line 17:
	</div>		</div>
	<div class="pdbe-citations 4zzf" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4zzf" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Flagellar protein 3D structures\|Flagellar protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Campylobacter~~ pylori]]	+	[[Category: Helicobacter pylori 26695]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Cendron, L]]	+	[[Category: Cendron L]]
-	[[Category: Matkovic-Calogovic, D]]	+	[[Category: Matkovic-Calogovic D]]
-	[[Category: Pulic, I]]	+	[[Category: Pulic I]]
-	[[Category: Salamina, M]]	+	[[Category: Salamina M]]
-	[[Category: Zanotti, G]]	+	[[Category: Zanotti G]]
-	~~[[Category: Flagellum]]~~	+
-	~~[[Category: Hook-caping protein]]~~	+
-	~~[[Category: Motor protein~~]]	+

OCA at 08:36, 26 June 2019

OCA — Wed, 26 Jun 2019 08:36:51 GMT

←Older revision		Revision as of 08:36, 26 June 2019
Line 1:		Line 1:

	==Crystal structure of truncated FlgD (tetragonal form) from the human pathogen Helicobacter pylori==		==Crystal structure of truncated FlgD (tetragonal form) from the human pathogen Helicobacter pylori==
-	<StructureSection load='4zzf' size='340' side='right' caption='[[4zzf]], [[Resolution\|resolution]] 2.17Å' scene=''>	+	<StructureSection load='4zzf' size='340' side='right'caption='[[4zzf]], [[Resolution\|resolution]] 2.17Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4zzf]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZZF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4zzf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZZF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zzf OCA], [http://pdbe.org/4zzf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zzf RCSB], [http://www.ebi.ac.uk/pdbsum/4zzf PDBsum]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flgD, C694_04670, HP_0907 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=85962 Campylobacter pylori])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zzf OCA], [http://pdbe.org/4zzf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zzf RCSB], [http://www.ebi.ac.uk/pdbsum/4zzf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zzf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Campylobacter pylori]]
		+	[[Category: Large Structures]]
	[[Category: Cendron, L]]		[[Category: Cendron, L]]
	[[Category: Matkovic-Calogovic, D]]		[[Category: Matkovic-Calogovic, D]]

OCA at 18:12, 26 February 2016

OCA — Fri, 26 Feb 2016 18:12:00 GMT

←Older revision		Revision as of 18:12, 26 February 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 4zzf is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of truncated FlgD (tetragonal form) from the human pathogen Helicobacter pylori==
		+	<StructureSection load='4zzf' size='340' side='right' caption='[[4zzf]], [[Resolution\|resolution]] 2.17Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4zzf]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZZF FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zzf OCA], [http://pdbe.org/4zzf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zzf RCSB], [http://www.ebi.ac.uk/pdbsum/4zzf PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/O25565_HELPY O25565_HELPY]] Required for flagellar hook formation. May act as a scaffolding protein.[RuleBase:RU362076]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Flagellin component D (FlgD) participates in the assembly of flagella, helical tubular structures that provide motility in non-filamentous bacteria. FlgD guides and controls the polymerization of FlgE that builds the hook, a short curved and hollow cylinder that connects the flagellar basal body spanning the cell envelope to the protruding filament. Crystal structures of truncated forms of Helicobacter pylori FlgD from two different strains in two space groups, I422 and P2, are reported here, at 2.2A and 2.8A resolution, respectively. Analogously to Pseudomonas aeruginosa and Xanthomonas campestris FlgD proteins, crystallization experiments set up for the full length protein resulted in crystals of a truncated form, lacking both N- and C-terminus ends. The crystal structures of the central domain show that the monomer is composed of a tudor and a fibronectin type III domain. The full length HpFlgD contains a long N-terminal signal region, probably partially flexible, a central globular region and a C-terminal segment with a peculiar repetitive pattern of amino acids. The spatial orientation of the two domains in HpFlgD differs from that of the homologous FlgD family members, P. aeruginosa and X. campestris. This difference together with the observation that HpFlgD assembles into tetramers, both in the solution and in the two crystal forms, strongly suggests that significant differences exist in the molecular organization of the flagella in different bacterial species.

-	~~Authors: Pulic~~, I., Cendron, L., Salamina, M., Matkovic-Calogovic, D., Zanotti, G.	+	Crystal structure of truncated FlgD from the human pathogen Helicobacter pylori.,Pulic I, Cendron L, Salamina M, Polverino de Laureto P, Matkovic-Calogovic D, Zanotti G J Struct Biol. 2016 Feb 8. pii: S1047-8477(16)30018-1. doi:, 10.1016/j.jsb.2016.02.003. PMID:26868107<ref>PMID:26868107</ref>

-	~~Description: Crystal structure~~ of ~~truncated FlgD (tetragonal form) from~~ the ~~human pathogen Helicobacter pylori~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 4zzf" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Cendron, L]]
		+	[[Category: Matkovic-Calogovic, D]]
	[[Category: Pulic, I]]		[[Category: Pulic, I]]
	[[Category: Salamina, M]]		[[Category: Salamina, M]]
	[[Category: Zanotti, G]]		[[Category: Zanotti, G]]
-	[[Category: ~~Cendron, L~~]]	+	[[Category: Flagellum]]
-	[[Category: ~~Matkovic~~-~~Calogovic, D~~]]	+	[[Category: Hook-caping protein]]
		+	[[Category: Motor protein]]

OCA at 00:16, 1 December 2015

OCA — Tue, 01 Dec 2015 00:16:32 GMT

←Older revision		Revision as of 00:16, 1 December 2015
Line 8:		Line 8:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Pulic, I]]		[[Category: Pulic, I]]
-	[[Category: Cendron, L]]
-	[[Category: Matkovic-Calogovic, D]]
	[[Category: Salamina, M]]		[[Category: Salamina, M]]
	[[Category: Zanotti, G]]		[[Category: Zanotti, G]]
		+	[[Category: Cendron, L]]
		+	[[Category: Matkovic-Calogovic, D]]

OCA at 11:21, 3 June 2015

OCA — Wed, 03 Jun 2015 11:21:32 GMT

←Older revision		Revision as of 11:21, 3 June 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4zzf is ON HOLD	+	The entry 4zzf is ON HOLD until Paper Publication

	Authors: Pulic, I., Cendron, L., Salamina, M., Matkovic-Calogovic, D., Zanotti, G.		Authors: Pulic, I., Cendron, L., Salamina, M., Matkovic-Calogovic, D., Zanotti, G.

OCA: Protected "4zzf" [edit=sysop:move=sysop]

OCA — Wed, 27 May 2015 14:57:01 GMT

Protected "4zzf" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:57, 27 May 2015

OCA: New page: '''Unreleased structure''' The entry 4zzf is ON HOLD Authors: Pulic, I., Cendron, L., Salamina, M., Matkovic-Calogovic, D., Zanotti, G. Description: Crystal structure of truncated FlgD...

OCA — Wed, 27 May 2015 14:57:00 GMT

New page: '''Unreleased structure''' The entry 4zzf is ON HOLD Authors: Pulic, I., Cendron, L., Salamina, M., Matkovic-Calogovic, D., Zanotti, G. Description: Crystal structure of truncated FlgD...

New page

'''Unreleased structure'''

The entry 4zzf is ON HOLD

Authors: Pulic, I., Cendron, L., Salamina, M., Matkovic-Calogovic, D., Zanotti, G.

Description: Crystal structure of truncated FlgD (tetragonal form) from the human pathogen Helicobacter pylori
[[Category: Unreleased Structures]]
[[Category: Pulic, I]]
[[Category: Cendron, L]]
[[Category: Matkovic-Calogovic, D]]
[[Category: Salamina, M]]
[[Category: Zanotti, G]]