5acj - Revision history

OCA at 11:07, 10 January 2024

OCA — Wed, 10 Jan 2024 11:07:22 GMT

←Older revision

Revision as of 11:07, 10 January 2024

OCA at 04:51, 25 May 2023

OCA — Thu, 25 May 2023 04:51:11 GMT

←Older revision		Revision as of 04:51, 25 May 2023
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	<StructureSection load='5acj' size='340' side='right'caption='[[5acj]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='5acj' size='340' side='right'caption='[[5acj]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5acj]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Lentinus_similis Lentinus~~ similis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ACJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ACJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5acj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Panus_similis Panus similis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ACJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ACJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=~~NAG~~:N-~~ACETYL~~-~~D-GLUCOSAMINE~~'>~~NAG~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PRD_900021:beta-cellotriose'>PRD_900021</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~HIC~~:4-~~METHYL~~-~~HISTIDINE~~'>~~HIC~~</scene><~~/td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5acj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5acj OCA], [https://pdbe.org/5acj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5acj RCSB], [https://www.ebi.ac.uk/pdbsum/5acj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5acj ProSAT]</span></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td>~~<td class="sblockDat">[[5acf\|5acf]], [[5acg\|5acg]], [[5ach\|5ach]], [[5aci\|5aci]]~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5acj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5acj OCA], [~~http~~://pdbe.org/5acj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5acj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5acj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5acj ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A0S2GKZ1_9APHY A0A0S2GKZ1_9APHY]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Lentinus~~ similis]]	+	[[Category: Panus similis]]
-	[[Category: Frandsen~~, K E.H~~]]	+	[[Category: Frandsen KEH]]
-	[[Category: Johansen~~, K S~~]]	+	[[Category: Johansen KS]]
-	[[Category: Leggio, L Lo]]	+	[[Category: Lo Leggio L]]
-	[[Category: Poulsen~~, J N~~]]	+	[[Category: Poulsen JN]]
-	[[Category: Tovborg, M]]	+	[[Category: Tovborg M]]
-	~~[[Category: Monooxygenase]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 07:57, 4 March 2020

OCA — Wed, 04 Mar 2020 07:57:24 GMT

←Older revision		Revision as of 07:57, 4 March 2020
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	==X-ray Structure of LPMO==		==X-ray Structure of LPMO==
-	<StructureSection load='5acj' size='340' side='right' caption='[[5acj]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='5acj' size='340' side='right'caption='[[5acj]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5acj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lentinus_similis Lentinus similis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ACJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ACJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[5acj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lentinus_similis Lentinus similis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ACJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ACJ FirstGlance]. <br>
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	</div>		</div>
	<div class="pdbe-citations 5acj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5acj" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Monooxygenase 3D structures\|Monooxygenase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Lentinus similis]]		[[Category: Lentinus similis]]
	[[Category: Frandsen, K E.H]]		[[Category: Frandsen, K E.H]]

OCA at 08:01, 17 January 2018

OCA — Wed, 17 Jan 2018 08:01:19 GMT

←Older revision		Revision as of 08:01, 17 January 2018
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	<StructureSection load='5acj' size='340' side='right' caption='[[5acj]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='5acj' size='340' side='right' caption='[[5acj]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5acj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ACJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ACJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5acj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lentinus_similis Lentinus similis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ACJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ACJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5acf\|5acf]], [[5acg\|5acg]], [[5ach\|5ach]], [[5aci\|5aci]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5acf\|5acf]], [[5acg\|5acg]], [[5ach\|5ach]], [[5aci\|5aci]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5acj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5acj OCA], [http://pdbe.org/5acj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5acj RCSB], [http://www.ebi.ac.uk/pdbsum/5acj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5acj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5acj OCA], [http://pdbe.org/5acj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5acj RCSB], [http://www.ebi.ac.uk/pdbsum/5acj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5acj ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Lentinus similis]]
	[[Category: Frandsen, K E.H]]		[[Category: Frandsen, K E.H]]
	[[Category: Johansen, K S]]		[[Category: Johansen, K S]]
-	[[Category: ~~LoLeggio~~, L]]	+	[[Category: Leggio, L Lo]]
	[[Category: Poulsen, J N]]		[[Category: Poulsen, J N]]
	[[Category: Tovborg, M]]		[[Category: Tovborg, M]]
	[[Category: Monooxygenase]]		[[Category: Monooxygenase]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 19:53, 9 March 2016

OCA — Wed, 09 Mar 2016 19:53:10 GMT

←Older revision		Revision as of 19:53, 9 March 2016
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5acj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5acj OCA], [http://pdbe.org/5acj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5acj RCSB], [http://www.ebi.ac.uk/pdbsum/5acj PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5acj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5acj OCA], [http://pdbe.org/5acj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5acj RCSB], [http://www.ebi.ac.uk/pdbsum/5acj PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Lytic polysaccharide monooxygenases (LPMOs) are copper-containing enzymes that oxidatively break down recalcitrant polysaccharides such as cellulose and chitin. Since their discovery, LPMOs have become integral factors in the industrial utilization of biomass, especially in the sustainable generation of cellulosic bioethanol. We report here a structural determination of an LPMO-oligosaccharide complex, yielding detailed insights into the mechanism of action of these enzymes. Using a combination of structure and electron paramagnetic resonance spectroscopy, we reveal the means by which LPMOs interact with saccharide substrates. We further uncover electronic and structural features of the enzyme active site, showing how LPMOs orchestrate the reaction of oxygen with polysaccharide chains.
		+
		+	The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases.,Frandsen KE, Simmons TJ, Dupree P, Poulsen JN, Hemsworth GR, Ciano L, Johnston EM, Tovborg M, Johansen KS, von Freiesleben P, Marmuse L, Fort S, Cottaz S, Driguez H, Henrissat B, Lenfant N, Tuna F, Baldansuren A, Davies GJ, Lo Leggio L, Walton PH Nat Chem Biol. 2016 Feb 29. doi: 10.1038/nchembio.2029. PMID:26928935<ref>PMID:26928935</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5acj" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 15:20, 2 March 2016

OCA — Wed, 02 Mar 2016 15:20:31 GMT

←Older revision		Revision as of 15:20, 2 March 2016
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-	'''Unreleased structure'''

-	~~The entry~~ 5acj ~~is ON HOLD until Paper Publication~~	+	==X-ray Structure of LPMO==
-		+	<StructureSection load='5acj' size='340' side='right' caption='[[5acj]], [[Resolution\|resolution]] 1.70Å' scene=''>
-	~~Authors~~: ~~Frandsen, K~~.E.H.~~, Poulsen, J~~.N.~~, Tovborg, M~~.~~, Johansen, K~~.S., ~~LoLeggio~~, L.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5acj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ACJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ACJ FirstGlance]. <br>
-	~~Description~~: X-~~ray Structure of LPMO~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>
-	[[~~Category~~: ~~Poulsen~~, J.N]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5acf\|5acf]], [[5acg\|5acg]], [[5ach\|5ach]], [[5aci\|5aci]]</td></tr>
-	[[Category: ~~Loleggio~~, L]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5acj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5acj OCA], [http://pdbe.org/5acj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5acj RCSB], [http://www.ebi.ac.uk/pdbsum/5acj PDBsum]</span></td></tr>
-	[[Category: Johansen, K.S]]	+	</table>
-	[[Category: ~~Frandsen~~, ~~K.E.H~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Frandsen, K E.H]]
		+	[[Category: Johansen, K S]]
		+	[[Category: LoLeggio, L]]
		+	[[Category: Poulsen, J N]]
	[[Category: Tovborg, M]]		[[Category: Tovborg, M]]
		+	[[Category: Monooxygenase]]
		+	[[Category: Oxidoreductase]]

OCA at 14:08, 30 December 2015

OCA — Wed, 30 Dec 2015 14:08:05 GMT

←Older revision		Revision as of 14:08, 30 December 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5acj is ON HOLD	+	The entry 5acj is ON HOLD until Paper Publication

-	Authors: Frandsen, K.E.H., Poulsen, J.N., LoLeggio, L.	+	Authors: Frandsen, K.E.H., Poulsen, J.N., Tovborg, M., Johansen, K.S., LoLeggio, L.

	Description: X-ray Structure of LPMO		Description: X-ray Structure of LPMO
Line 9:		Line 9:
	[[Category: Poulsen, J.N]]		[[Category: Poulsen, J.N]]
	[[Category: Loleggio, L]]		[[Category: Loleggio, L]]
		+	[[Category: Johansen, K.S]]
	[[Category: Frandsen, K.E.H]]		[[Category: Frandsen, K.E.H]]
		+	[[Category: Tovborg, M]]

OCA: Protected "5acj" [edit=sysop:move=sysop]

OCA — Wed, 26 Aug 2015 10:56:25 GMT

Protected "5acj" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:56, 26 August 2015

OCA: New page: '''Unreleased structure''' The entry 5acj is ON HOLD Authors: Frandsen, K.E.H., Poulsen, J.N., LoLeggio, L. Description: X-ray Structure of LPMO Category: Unreleased Structures [[C...

OCA — Wed, 26 Aug 2015 10:56:24 GMT

New page: '''Unreleased structure''' The entry 5acj is ON HOLD Authors: Frandsen, K.E.H., Poulsen, J.N., LoLeggio, L. Description: X-ray Structure of LPMO Category: Unreleased Structures [[C...

New page

'''Unreleased structure'''

The entry 5acj is ON HOLD

Authors: Frandsen, K.E.H., Poulsen, J.N., LoLeggio, L.

Description: X-ray Structure of LPMO
[[Category: Unreleased Structures]]
[[Category: Poulsen, J.N]]
[[Category: Loleggio, L]]
[[Category: Frandsen, K.E.H]]