5ahz - Revision history

OCA at 11:10, 10 January 2024

OCA — Wed, 10 Jan 2024 11:10:07 GMT

←Older revision		Revision as of 11:10, 10 January 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5ahz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AHZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[5ahz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AHZ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.45Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ahz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ahz OCA], [https://pdbe.org/5ahz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ahz RCSB], [https://www.ebi.ac.uk/pdbsum/5ahz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ahz ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ahz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ahz OCA], [https://pdbe.org/5ahz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ahz RCSB], [https://www.ebi.ac.uk/pdbsum/5ahz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ahz ProSAT]</span></td></tr>
	</table>		</table>

OCA at 05:00, 25 May 2023

OCA — Thu, 25 May 2023 05:00:50 GMT

←Older revision		Revision as of 05:00, 25 May 2023
Line 3:		Line 3:
	<StructureSection load='5ahz' size='340' side='right'caption='[[5ahz]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='5ahz' size='340' side='right'caption='[[5ahz]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ahz]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AHZ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5AHZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ahz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AHZ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ahy\|5ahy]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ahz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ahz OCA], [https://pdbe.org/5ahz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ahz RCSB], [https://www.ebi.ac.uk/pdbsum/5ahz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ahz ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ahz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ahz OCA], [~~http~~://pdbe.org/5ahz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5ahz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5ahz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5ahz ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/BACH_HALS3 BACH_HALS3]] Light-driven chloride pump.<ref>PMID:24409552</ref>	+	[https://www.uniprot.org/uniprot/BACH_HALS3 BACH_HALS3] Light-driven chloride pump.<ref>PMID:24409552</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 21:
	==See Also==		==See Also==
	*[[Bacteriorhodopsin 3D structures\|Bacteriorhodopsin 3D structures]]		*[[Bacteriorhodopsin 3D structures\|Bacteriorhodopsin 3D structures]]
-	*[[Rhodopsin\|Rhodopsin]]	+	*[[Rhodopsin 3D structures\|Rhodopsin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus halobius ruber klebahn 1919~~]]	+	[[Category: Halobacterium salinarum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Heberle, J]]	+	[[Category: Heberle J]]
-	[[Category: Niemann~~, H H~~]]	+	[[Category: Niemann HH]]
-	[[Category: Schlesinger, R]]	+	[[Category: Schlesinger R]]
-	[[Category: Schreiner, M]]	+	[[Category: Schreiner M]]
-	~~[[Category: Archaeal rhodopsin]]~~	+
-	~~[[Category: Halophilic archaea]]~~	+
-	~~[[Category: Ion transmembrane transport]]~~	+
-	~~[[Category: Light driven ion pump]]~~	+
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Retinal protein]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 12:57, 10 May 2019

OCA — Fri, 10 May 2019 12:57:35 GMT

←Older revision		Revision as of 12:57, 10 May 2019
Line 1:		Line 1:

	==Bromide-bound form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form==		==Bromide-bound form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form==
-	<StructureSection load='5ahz' size='340' side='right' caption='[[5ahz]], [[Resolution\|resolution]] 2.45Å' scene=''>	+	<StructureSection load='5ahz' size='340' side='right'caption='[[5ahz]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ahz]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AHZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AHZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ahz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AHZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AHZ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ahy\|5ahy]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ahy\|5ahy]]</td></tr>
Line 21:		Line 21:

	==See Also==		==See Also==
		+	*[[Bacteriorhodopsin 3D structures\|Bacteriorhodopsin 3D structures]]
	*[[Rhodopsin\|Rhodopsin]]		*[[Rhodopsin\|Rhodopsin]]
	== References ==		== References ==
Line 26:		Line 27:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus halobius ruber klebahn 1919]]
		+	[[Category: Large Structures]]
	[[Category: Heberle, J]]		[[Category: Heberle, J]]
	[[Category: Niemann, H H]]		[[Category: Niemann, H H]]

OCA at 11:43, 15 December 2016

OCA — Thu, 15 Dec 2016 11:43:02 GMT

←Older revision		Revision as of 11:43, 15 December 2016
Line 1:		Line 1:
		+
	==Bromide-bound form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form==		==Bromide-bound form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form==
	<StructureSection load='5ahz' size='340' side='right' caption='[[5ahz]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='5ahz' size='340' side='right' caption='[[5ahz]], [[Resolution\|resolution]] 2.45Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ahy\|5ahy]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ahy\|5ahy]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ahz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ahz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5ahz RCSB], [http://www.ebi.ac.uk/pdbsum/5ahz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ahz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ahz OCA], [http://pdbe.org/5ahz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ahz RCSB], [http://www.ebi.ac.uk/pdbsum/5ahz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ahz ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 5ahz" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 08:56, 17 June 2015

OCA — Wed, 17 Jun 2015 08:56:11 GMT

←Older revision		Revision as of 08:56, 17 June 2015
Line 17:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+
		+	==See Also==
		+	*[[Rhodopsin\|Rhodopsin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:28, 13 May 2015

OCA — Wed, 13 May 2015 06:28:58 GMT

←Older revision		Revision as of 06:28, 13 May 2015
Line 9:		Line 9:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/BACH_HALS3 BACH_HALS3]] Light-driven chloride pump.<ref>PMID:24409552</ref>		[[http://www.uniprot.org/uniprot/BACH_HALS3 BACH_HALS3]] Light-driven chloride pump.<ref>PMID:24409552</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Halorhodopsin from the halophilic archaeon Halobacterium salinarum is a membrane located light-driven chloride pump. Upon illumination Halorhodopsin undergoes a reversible photocycle initiated by the all-trans to 13-cis isomerization of the covalently bound retinal chromophore. The photocycle consists of several spectroscopically distinct intermediates. The structural basis of the chloride transport mechanism remains elusive, presumably because packing contacts have so far precluded protein conformational changes in the available crystals. With the intention to structurally characterize late photocycle intermediates by X-ray crystallography we crystallized Halorhodopsin in a new crystal form using the vesicle fusion method. In the new crystal form lateral contacts are mediated by helices A and G. Helices E and F that were suggested to perform large movements during the photocycle are almost unrestrained by packing contacts. This feature might permit the displacement of these helices without disrupting the crystal lattice. Therefore, this new crystal form might be an excellent system for the structural characterization of late Halorhodopsin photocycle intermediates by trapping or by time resolved experiments, especially at XFELs.
		+
		+	Structure of Halorhodopsin from Halobacterium salinarum in a new crystal form that imposes little restraint on the E-F loop.,Schreiner M, Schlesinger R, Heberle J, Niemann HH J Struct Biol. 2015 Apr 24. pii: S1047-8477(15)00082-9. doi:, 10.1016/j.jsb.2015.04.010. PMID:25916754<ref>PMID:25916754</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:56, 22 April 2015

OCA — Wed, 22 Apr 2015 12:56:46 GMT

←Older revision		Revision as of 12:56, 22 April 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Bromide-bound form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form==
-		+	<StructureSection load='5ahz' size='340' side='right' caption='[[5ahz]], [[Resolution\|resolution]] 2.45Å' scene=''>
-	~~The entry~~ 5ahz is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5ahz]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AHZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AHZ FirstGlance]. <br>
-	~~Authors~~: ~~Schreiner, M~~.~~, Schlesinger, R~~.~~, Heberle, J~~.~~, Niemann, H~~.H.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ahy\|5ahy]]</td></tr>
-	~~Description~~: ~~Bromide~~-~~bound form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ahz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ahz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5ahz RCSB], [http://www.ebi.ac.uk/pdbsum/5ahz PDBsum]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[~~Category~~: ~~Schlesinger~~, R]]	+	== Function ==
-	[[~~Category~~: ~~Niemann, H~~.H]]	+	[[http://www.uniprot.org/uniprot/BACH_HALS3 BACH_HALS3]] Light-driven chloride pump.<ref>PMID:24409552</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Heberle, J]]		[[Category: Heberle, J]]
		+	[[Category: Niemann, H H]]
		+	[[Category: Schlesinger, R]]
	[[Category: Schreiner, M]]		[[Category: Schreiner, M]]
		+	[[Category: Archaeal rhodopsin]]
		+	[[Category: Halophilic archaea]]
		+	[[Category: Ion transmembrane transport]]
		+	[[Category: Light driven ion pump]]
		+	[[Category: Membrane protein]]
		+	[[Category: Retinal protein]]
		+	[[Category: Transport protein]]

OCA at 13:05, 25 February 2015

OCA — Wed, 25 Feb 2015 13:05:50 GMT

←Older revision		Revision as of 13:05, 25 February 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5ahz is ON HOLD	+	The entry 5ahz is ON HOLD until Paper Publication

	Authors: Schreiner, M., Schlesinger, R., Heberle, J., Niemann, H.H.		Authors: Schreiner, M., Schlesinger, R., Heberle, J., Niemann, H.H.

OCA: Protected "5ahz" [edit=sysop:move=sysop]

OCA — Wed, 18 Feb 2015 12:13:43 GMT

Protected "5ahz" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:13, 18 February 2015

OCA: New page: '''Unreleased structure''' The entry 5ahz is ON HOLD Authors: Schreiner, M., Schlesinger, R., Heberle, J., Niemann, H.H. Description: Bromide-bound form of Halorhodopsin from Halobacte...

OCA — Wed, 18 Feb 2015 12:13:42 GMT

New page: '''Unreleased structure''' The entry 5ahz is ON HOLD Authors: Schreiner, M., Schlesinger, R., Heberle, J., Niemann, H.H. Description: Bromide-bound form of Halorhodopsin from Halobacte...

New page

'''Unreleased structure'''

The entry 5ahz is ON HOLD

Authors: Schreiner, M., Schlesinger, R., Heberle, J., Niemann, H.H.

Description: Bromide-bound form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form
[[Category: Unreleased Structures]]
[[Category: Schlesinger, R]]
[[Category: Niemann, H.H]]
[[Category: Heberle, J]]
[[Category: Schreiner, M]]