5aus - Revision history

OCA at 15:48, 8 November 2023

OCA — Wed, 08 Nov 2023 15:48:54 GMT

←Older revision		Revision as of 15:48, 8 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5aus]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Hydrogenobacter_thermophilus_TK-6 Hydrogenobacter thermophilus TK-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AUS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AUS FirstGlance]. <br>		<table><tr><td colspan='2'>[[5aus]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Hydrogenobacter_thermophilus_TK-6 Hydrogenobacter thermophilus TK-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AUS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AUS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5aus FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aus OCA], [https://pdbe.org/5aus PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5aus RCSB], [https://www.ebi.ac.uk/pdbsum/5aus PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5aus ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5aus FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aus OCA], [https://pdbe.org/5aus PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5aus RCSB], [https://www.ebi.ac.uk/pdbsum/5aus PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5aus ProSAT]</span></td></tr>
	</table>		</table>

OCA at 06:26, 31 May 2023

OCA — Wed, 31 May 2023 06:26:34 GMT

←Older revision		Revision as of 06:26, 31 May 2023
Line 3:		Line 3:
	<StructureSection load='5aus' size='340' side='right'caption='[[5aus]], [[Resolution\|resolution]] 1.30Å' scene=''>		<StructureSection load='5aus' size='340' side='right'caption='[[5aus]], [[Resolution\|resolution]] 1.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5aus]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Hydtt Hydtt~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AUS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5AUS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5aus]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Hydrogenobacter_thermophilus_TK-6 Hydrogenobacter thermophilus TK-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AUS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AUS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vym\|3vym]], [[5aur\|5aur]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5aus FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aus OCA], [https://pdbe.org/5aus PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5aus RCSB], [https://www.ebi.ac.uk/pdbsum/5aus PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5aus ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HTH_0988, Hydth_0984 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=608538 HYDTT])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5aus FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aus OCA], [~~http~~://pdbe.org/5aus PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5aus RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5aus PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5aus ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/CY552_HYDTT CY552_HYDTT]] Reacts with hydrogenase.	+	[https://www.uniprot.org/uniprot/CY552_HYDTT CY552_HYDTT] Reacts with hydrogenase.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Hydtt~~]]	+	[[Category: Hydrogenobacter thermophilus TK-6]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Higuchi, Y]]	+	[[Category: Higuchi Y]]
-	[[Category: Hirota, S]]	+	[[Category: Hirota S]]
-	[[Category: Komori, H]]	+	[[Category: Komori H]]
-	[[Category: Nagao, S]]	+	[[Category: Nagao S]]
-	[[Category: Ren, C]]	+	[[Category: Ren C]]
-	[[Category: Shomura, Y]]	+	[[Category: Shomura Y]]
-	[[Category: Yamanaka, M]]	+	[[Category: Yamanaka M]]
-	~~[[Category: Electron transport~~]]	+

OCA at 07:12, 3 July 2019

OCA — Wed, 03 Jul 2019 07:12:30 GMT

←Older revision		Revision as of 07:12, 3 July 2019
Line 1:		Line 1:
		+
	==Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at C-terminal region==		==Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at C-terminal region==
-	<StructureSection load='5aus' size='340' side='right' caption='[[5aus]], [[Resolution\|resolution]] 1.30Å' scene=''>	+	<StructureSection load='5aus' size='340' side='right'caption='[[5aus]], [[Resolution\|resolution]] 1.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5aus]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AUS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AUS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5aus]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Hydtt Hydtt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AUS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AUS FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vym\|3vym]], [[5aur\|5aur]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vym\|3vym]], [[5aur\|5aur]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5aus FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aus OCA], [http://pdbe.org/5aus PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5aus RCSB], [http://www.ebi.ac.uk/pdbsum/5aus PDBsum]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HTH_0988, Hydth_0984 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=608538 HYDTT])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5aus FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aus OCA], [http://pdbe.org/5aus PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5aus RCSB], [http://www.ebi.ac.uk/pdbsum/5aus PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5aus ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 22:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Hydtt]]
		+	[[Category: Large Structures]]
	[[Category: Higuchi, Y]]		[[Category: Higuchi, Y]]
	[[Category: Hirota, S]]		[[Category: Hirota, S]]

OCA at 05:23, 22 October 2015

OCA — Thu, 22 Oct 2015 05:23:53 GMT

←Older revision		Revision as of 05:23, 22 October 2015
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at C-terminal region==
		+	<StructureSection load='5aus' size='340' side='right' caption='[[5aus]], [[Resolution\|resolution]] 1.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5aus]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AUS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AUS FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vym\|3vym]], [[5aur\|5aur]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5aus FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aus OCA], [http://pdbe.org/5aus PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5aus RCSB], [http://www.ebi.ac.uk/pdbsum/5aus PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CY552_HYDTT CY552_HYDTT]] Reacts with hydrogenase.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	High-order oligomers of Hydrogenobacter thermophilus cytochrome c552 increased with the insertion of more Gly residues between Ala18 and Lys19 at the major hinge loop of the wild-type protein. N-Terminal domain swapping and C-terminal domain swapping were elucidated by using X-ray crystallography for the mutant with the insertion of three Gly residues at the hinge loop.

-	~~The entry 5aus is ON HOLD until Paper Publication~~	+	Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome cvia the elongation of the major hinge loop.,Ren C, Nagao S, Yamanaka M, Komori H, Shomura Y, Higuchi Y, Hirota S Mol Biosyst. 2015 Oct 9. PMID:26451671<ref>PMID:26451671</ref>

-	~~Authors: Ren~~, C.~~, Nagao,~~ S.~~, Yamanaka, M., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description~~: ~~Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at C-terminal region~~	+	<div class="pdbe-citations 5aus" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Unreleased Structures~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Higuchi, Y]]
	[[Category: Hirota, S]]		[[Category: Hirota, S]]
-	[[Category: ~~Yamanaka~~, ~~M]]~~	+	[[Category: Komori, H]]
-	~~[[Category: Higuchi, Y~~]]	+
	[[Category: Nagao, S]]		[[Category: Nagao, S]]
	[[Category: Ren, C]]		[[Category: Ren, C]]
	[[Category: Shomura, Y]]		[[Category: Shomura, Y]]
-	[[Category: ~~Komori~~, H]]	+	[[Category: Yamanaka, M]]
		+	[[Category: Electron transport]]

OCA at 11:27, 24 June 2015

OCA — Wed, 24 Jun 2015 11:27:17 GMT

←Older revision		Revision as of 11:27, 24 June 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5aus is ON HOLD	+	The entry 5aus is ON HOLD until Paper Publication

	Authors: Ren, C., Nagao, S., Yamanaka, M., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S.		Authors: Ren, C., Nagao, S., Yamanaka, M., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S.

OCA: Protected "5aus" [edit=sysop:move=sysop]

OCA — Wed, 17 Jun 2015 13:40:04 GMT

Protected "5aus" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:40, 17 June 2015

OCA: New page: '''Unreleased structure''' The entry 5aus is ON HOLD Authors: Ren, C., Nagao, S., Yamanaka, M., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S. Description: Hydrogenobacter thermophil...

OCA — Wed, 17 Jun 2015 13:40:03 GMT

New page: '''Unreleased structure''' The entry 5aus is ON HOLD Authors: Ren, C., Nagao, S., Yamanaka, M., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S. Description: Hydrogenobacter thermophil...

New page

'''Unreleased structure'''

The entry 5aus is ON HOLD

Authors: Ren, C., Nagao, S., Yamanaka, M., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S.

Description: Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at C-terminal region
[[Category: Unreleased Structures]]
[[Category: Hirota, S]]
[[Category: Yamanaka, M]]
[[Category: Higuchi, Y]]
[[Category: Nagao, S]]
[[Category: Ren, C]]
[[Category: Shomura, Y]]
[[Category: Komori, H]]