5b0o - Revision history

OCA at 15:54, 8 November 2023

OCA — Wed, 08 Nov 2023 15:54:43 GMT

←Older revision		Revision as of 15:54, 8 November 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5b0o]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B0O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B0O FirstGlance]. <br>		<table><tr><td colspan='2'>[[5b0o]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B0O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B0O FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b0o OCA], [https://pdbe.org/5b0o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b0o RCSB], [https://www.ebi.ac.uk/pdbsum/5b0o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b0o ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b0o OCA], [https://pdbe.org/5b0o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b0o RCSB], [https://www.ebi.ac.uk/pdbsum/5b0o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b0o ProSAT]</span></td></tr>
	</table>		</table>

OCA at 06:33, 31 May 2023

OCA — Wed, 31 May 2023 06:33:55 GMT

←Older revision		Revision as of 06:33, 31 May 2023
Line 1:		Line 1:

	==Structure of the FliH-FliI complex==		==Structure of the FliH-FliI complex==
-	<StructureSection load='5b0o' size='340' side='right' caption='[[5b0o]], [[Resolution\|resolution]] 3.00Å' scene=''>	+	<StructureSection load='5b0o' size='340' side='right'caption='[[5b0o]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5b0o]] is a 12 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Salty Salty~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B0O OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5B0O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5b0o]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B0O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B0O FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dpy\|2dpy]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b0o OCA], [https://pdbe.org/5b0o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b0o RCSB], [https://www.ebi.ac.uk/pdbsum/5b0o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b0o ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fliI, fla AIII, flaC, STM1972 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY]), fliH, fla AII.3, fla BIII, STM1971 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5b0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b0o OCA], [~~http~~://pdbe.org/5b0o PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5b0o RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5b0o PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5b0o ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/FLII_SALTY FLII_SALTY]] Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. May be involved in a specialized protein export pathway that proceeds without signal peptide cleavage~~. [[http://www.uniprot.org/uniprot/FLIH_SALTY FLIH_SALTY]] Needed for flagellar regrowth and assembly~~.	+	[https://www.uniprot.org/uniprot/FLII_SALTY FLII_SALTY] Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. May be involved in a specialized protein export pathway that proceeds without signal peptide cleavage.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 18:
	</div>		</div>
	<div class="pdbe-citations 5b0o" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5b0o" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Flagellar protein 3D structures\|Flagellar protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Salty~~]]	+	[[Category: Large Structures]]
-	[[Category: Imada, K]]	+	[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-	[[Category: Kinoshita, M]]	+	[[Category: Imada K]]
-	[[Category: Minamino, T]]	+	[[Category: Kinoshita M]]
-	[[Category: Namba, K]]	+	[[Category: Minamino T]]
-	[[Category: Uchida, Y]]	+	[[Category: Namba K]]
-	~~[[Category: Atpase]]~~	+	[[Category: Uchida Y]]
-	~~[[Category: Bacterial flagellum]]~~	+
-	~~[[Category: Hydrolase-motor protein complex]]~~	+
-	~~[[Category: Peripheral stalk]]~~	+
-	~~[[Category: Type iii secretion~~]]	+

OCA at 13:10, 16 November 2017

OCA — Thu, 16 Nov 2017 13:10:38 GMT

←Older revision		Revision as of 13:10, 16 November 2017
Line 3:		Line 3:
	<StructureSection load='5b0o' size='340' side='right' caption='[[5b0o]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='5b0o' size='340' side='right' caption='[[5b0o]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5b0o]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B0O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B0O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5b0o]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Salty Salty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B0O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B0O FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dpy\|2dpy]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dpy\|2dpy]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fliI, fla AIII, flaC, STM1972 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY]), fliH, fla AII.3, fla BIII, STM1971 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b0o OCA], [http://pdbe.org/5b0o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b0o RCSB], [http://www.ebi.ac.uk/pdbsum/5b0o PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b0o OCA], [http://pdbe.org/5b0o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b0o RCSB], [http://www.ebi.ac.uk/pdbsum/5b0o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b0o ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Salty]]
	[[Category: Imada, K]]		[[Category: Imada, K]]
	[[Category: Kinoshita, M]]		[[Category: Kinoshita, M]]

OCA at 18:21, 10 May 2016

OCA — Tue, 10 May 2016 18:21:12 GMT

←Older revision		Revision as of 18:21, 10 May 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5b0o is ~~ON HOLD until Paper~~ Publication	+	==Structure of the FliH-FliI complex==
		+	<StructureSection load='5b0o' size='340' side='right' caption='[[5b0o]], [[Resolution\|resolution]] 3.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5b0o]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B0O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B0O FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dpy\|2dpy]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b0o OCA], [http://pdbe.org/5b0o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b0o RCSB], [http://www.ebi.ac.uk/pdbsum/5b0o PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FLII_SALTY FLII_SALTY]] Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. May be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. [[http://www.uniprot.org/uniprot/FLIH_SALTY FLIH_SALTY]] Needed for flagellar regrowth and assembly.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	FliI and FliJ form the FliI6FliJ ATPase complex of the bacterial flagellar export apparatus, a member of the type III secretion system. The FliI6FliJ complex is structurally similar to the alpha3beta3gamma complex of F1-ATPase. The FliH homodimer binds to FliI to connect the ATPase complex to the flagellar base, but the details are unknown. Here we report the structure of the homodimer of a C-terminal fragment of FliH (FliHC2) in complex with FliI. FliHC2shows an unusually asymmetric homodimeric structure that markedly resembles the peripheral stalk of the A/V-type ATPases. The FliHC2-FliI hexamer model reveals that the C-terminal domains of the FliI ATPase face the cell membrane in a way similar to the F/A/V-type ATPases. We discuss the mechanism of flagellar ATPase complex formation and a common origin shared by the type III secretion system and the F/A/V-type ATPases.

-	~~Authors: Imada~~, K., ~~Uchida~~, Y., Kinoshita, M., Namba, K., ~~Minamino, T~~.	+	Insight into the flagella type III export revealed by the complex structure of the type III ATPase and its regulator.,Imada K, Minamino T, Uchida Y, Kinoshita M, Namba K Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3633-8. doi:, 10.1073/pnas.1524025113. Epub 2016 Mar 16. PMID:26984495<ref>PMID:26984495</ref>

-	~~Description: Structure~~ of the ~~FliH-FliI complex~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
		+	<div class="pdbe-citations 5b0o" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Imada, K]]		[[Category: Imada, K]]
-	[[Category: ~~Uchida~~, Y]]	+	[[Category: Kinoshita, M]]
	[[Category: Minamino, T]]		[[Category: Minamino, T]]
	[[Category: Namba, K]]		[[Category: Namba, K]]
-	[[Category: ~~Kinoshita~~, M]]	+	[[Category: Uchida, Y]]
		+	[[Category: Atpase]]
		+	[[Category: Bacterial flagellum]]
		+	[[Category: Hydrolase-motor protein complex]]
		+	[[Category: Peripheral stalk]]
		+	[[Category: Type iii secretion]]

OCA at 10:03, 16 December 2015

OCA — Wed, 16 Dec 2015 10:03:54 GMT

←Older revision		Revision as of 10:03, 16 December 2015
Line 7:		Line 7:
	Description: Structure of the FliH-FliI complex		Description: Structure of the FliH-FliI complex
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Imada, K]]
	[[Category: Uchida, Y]]		[[Category: Uchida, Y]]
	[[Category: Minamino, T]]		[[Category: Minamino, T]]
-	[[Category: Kinoshita, M]]
-	[[Category: Imada, K]]
	[[Category: Namba, K]]		[[Category: Namba, K]]
		+	[[Category: Kinoshita, M]]

OCA: Protected "5b0o" [edit=sysop:move=sysop]

OCA — Tue, 01 Dec 2015 00:46:56 GMT

Protected "5b0o" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:46, 1 December 2015

OCA: New page: '''Unreleased structure''' The entry 5b0o is ON HOLD until Paper Publication Authors: Imada, K., Uchida, Y., Kinoshita, M., Namba, K., Minamino, T. Description: Structure of the FliH-F...

OCA — Tue, 01 Dec 2015 00:46:55 GMT

New page: '''Unreleased structure''' The entry 5b0o is ON HOLD until Paper Publication Authors: Imada, K., Uchida, Y., Kinoshita, M., Namba, K., Minamino, T. Description: Structure of the FliH-F...

New page

'''Unreleased structure'''

The entry 5b0o is ON HOLD until Paper Publication

Authors: Imada, K., Uchida, Y., Kinoshita, M., Namba, K., Minamino, T.

Description: Structure of the FliH-FliI complex
[[Category: Unreleased Structures]]
[[Category: Uchida, Y]]
[[Category: Minamino, T]]
[[Category: Kinoshita, M]]
[[Category: Imada, K]]
[[Category: Namba, K]]