5b4s - Revision history

OCA at 06:38, 31 May 2023

OCA — Wed, 31 May 2023 06:38:39 GMT

←Older revision		Revision as of 06:38, 31 May 2023
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	<StructureSection load='5b4s' size='340' side='right'caption='[[5b4s]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='5b4s' size='340' side='right'caption='[[5b4s]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5b4s]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"matsuebacter_chitosanotabidus"_park_et_al._1999 "matsuebacter chitosanotabidus" park et al. 1999~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B4S OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5B4S FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5b4s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mitsuaria_chitosanitabida Mitsuaria chitosanitabida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B4S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B4S FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">choA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=65048 "Matsuebacter chitosanotabidus" Park et al. 1999])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b4s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b4s OCA], [https://pdbe.org/5b4s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b4s RCSB], [https://www.ebi.ac.uk/pdbsum/5b4s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b4s ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5b4s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b4s OCA], [~~http~~://pdbe.org/5b4s PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5b4s RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5b4s PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5b4s ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O82856_9BURK O82856_9BURK]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Matsuebacter chitosanotabidus park et al. 1999]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Hamada, K]]	+	[[Category: Mitsuaria chitosanitabida]]
-	[[Category: Kawamukai, M]]	+	[[Category: Hamada K]]
-	[[Category: Kumasaka, T]]	+	[[Category: Kawamukai M]]
-	[[Category: Yamamoto, M]]	+	[[Category: Kumasaka T]]
-	[[Category: Yorinaga, Y]]	+	[[Category: Yamamoto M]]
-	~~[[Category: Chitosan]]~~	+	[[Category: Yorinaga Y]]
-	~~[[Category: Chitosanase]]~~	+
-	~~[[Category: Glycoside hydrolase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 10:04, 26 February 2020

OCA — Wed, 26 Feb 2020 10:04:20 GMT

←Older revision		Revision as of 10:04, 26 February 2020
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	==Crystal Structure of GH80 chitosanase from Mitsuaria chitosanitabida==		==Crystal Structure of GH80 chitosanase from Mitsuaria chitosanitabida==
-	<StructureSection load='5b4s' size='340' side='right' caption='[[5b4s]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='5b4s' size='340' side='right'caption='[[5b4s]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5b4s]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B4S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B4S FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5b4s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"matsuebacter_chitosanotabidus"_park_et_al._1999 "matsuebacter chitosanotabidus" park et al. 1999]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B4S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B4S FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">choA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=65048 "Matsuebacter chitosanotabidus" Park et al. 1999])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b4s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b4s OCA], [http://pdbe.org/5b4s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b4s RCSB], [http://www.ebi.ac.uk/pdbsum/5b4s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b4s ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b4s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b4s OCA], [http://pdbe.org/5b4s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b4s RCSB], [http://www.ebi.ac.uk/pdbsum/5b4s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b4s ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Matsuebacter chitosanotabidus park et al. 1999]]
		+	[[Category: Large Structures]]
	[[Category: Hamada, K]]		[[Category: Hamada, K]]
	[[Category: Kawamukai, M]]		[[Category: Kawamukai, M]]

OCA at 17:52, 1 February 2017

OCA — Wed, 01 Feb 2017 17:52:56 GMT

←Older revision		Revision as of 17:52, 1 February 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5b4s is ~~ON HOLD until Paper~~ Publication	+	==Crystal Structure of GH80 chitosanase from Mitsuaria chitosanitabida==
		+	<StructureSection load='5b4s' size='340' side='right' caption='[[5b4s]], [[Resolution\|resolution]] 1.75Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5b4s]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B4S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B4S FirstGlance]. <br>
		+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b4s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b4s OCA], [http://pdbe.org/5b4s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b4s RCSB], [http://www.ebi.ac.uk/pdbsum/5b4s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b4s ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Chitosanases belong to glycoside hydrolase families 5, 7, 8, 46, 75 and 80 and hydrolyse glucosamine polymers produced by partial or full deacetylation of chitin. Herein, we determined the crystal structure of chitosanase from the beta-proteobacterium, Mitsuaria chitosanitabida, (McChoA) at 1.75 A resolution; the first structure of a family 80 chitosanase. McChoA is a 34 kDa extracellular protein of 301 amino acids that fold into two (upper and lower) globular domains with an active site cleft between them. Key substrate-binding features are conserved with family 24 lysozymes and family 46 chitosanases. The distance between catalytic residues E41 and E61 (10.8 A) indicates an inverting type mechanism. Uniquely, three disulphide bridges and the C terminus might contribute to enzyme activity.

-	~~Authors~~:	+	Crystal structure of a family 80 chitosanase from Mitsuaria chitosanitabida.,Yorinaga Y, Kumasaka T, Yamamoto M, Hamada K, Kawamukai M FEBS Lett. 2017 Jan 13. doi: 10.1002/1873-3468.12557. PMID:28084023<ref>PMID:28084023</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5b4s" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Hamada, K]]
		+	[[Category: Kawamukai, M]]
		+	[[Category: Kumasaka, T]]
		+	[[Category: Yamamoto, M]]
		+	[[Category: Yorinaga, Y]]
		+	[[Category: Chitosan]]
		+	[[Category: Chitosanase]]
		+	[[Category: Glycoside hydrolase]]
		+	[[Category: Hydrolase]]

OCA at 11:08, 15 May 2016

OCA — Sun, 15 May 2016 11:08:56 GMT

←Older revision		Revision as of 11:08, 15 May 2016
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	The entry 5b4s is ON HOLD until Paper Publication		The entry 5b4s is ON HOLD until Paper Publication

-	Authors: ~~Kumasaka, T., Yorinaga, Y., Yamamoto, M., Hamada, K., Kawamukai, M.~~	+	Authors:

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Yorinaga, Y]]
-	[[Category: Yamamoto, M]]
-	[[Category: Hamada, K]]
-	[[Category: Kumasaka, T]]
-	[[Category: Kawamukai, M]]

OCA: Protected "5b4s" [edit=sysop:move=sysop]

OCA — Tue, 10 May 2016 20:58:45 GMT

Protected "5b4s" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:58, 10 May 2016

OCA: New page: '''Unreleased structure''' The entry 5b4s is ON HOLD until Paper Publication Authors: Kumasaka, T., Yorinaga, Y., Yamamoto, M., Hamada, K., Kawamukai, M. Description: [[Category: Unre...

OCA — Tue, 10 May 2016 20:58:44 GMT

New page: '''Unreleased structure''' The entry 5b4s is ON HOLD until Paper Publication Authors: Kumasaka, T., Yorinaga, Y., Yamamoto, M., Hamada, K., Kawamukai, M. Description: [[Category: Unre...

New page

'''Unreleased structure'''

The entry 5b4s is ON HOLD until Paper Publication

Authors: Kumasaka, T., Yorinaga, Y., Yamamoto, M., Hamada, K., Kawamukai, M.

Description:
[[Category: Unreleased Structures]]
[[Category: Yorinaga, Y]]
[[Category: Yamamoto, M]]
[[Category: Hamada, K]]
[[Category: Kumasaka, T]]
[[Category: Kawamukai, M]]