5b52 - Revision history

OCA at 09:07, 20 March 2024

OCA — Wed, 20 Mar 2024 09:07:27 GMT

←Older revision		Revision as of 09:07, 20 March 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5b52]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B52 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5b52]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B52 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b52 OCA], [https://pdbe.org/5b52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b52 RCSB], [https://www.ebi.ac.uk/pdbsum/5b52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b52 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b52 OCA], [https://pdbe.org/5b52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b52 RCSB], [https://www.ebi.ac.uk/pdbsum/5b52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b52 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/Q88GF9_PSEPK Q88GF9_PSEPK]		[https://www.uniprot.org/uniprot/Q88GF9_PSEPK Q88GF9_PSEPK]
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	H-NS family proteins play key roles in bacterial nucleoid compaction and global transcription. MvaT homologues in Pseudomonas have almost negligible amino acid sequence identity with H-NS, but can complement an hns-related phenotype of Escherichia coli. Here, we report the crystal structure of the N-terminal dimerization/oligomerization domain of TurB, an MvaT homologue in Pseudomonas putida KT2440. Our data identify two dimerization sites; the structure of the central dimerization site is almost the same as the corresponding region of H-NS, whereas the terminal dimerization sites are different. Our results reveal similarities and differences in dimerization and oligomerization mechanisms between H-NS and TurB.
-
-	Structural similarities and differences in H-NS family proteins revealed by the N-terminal structure of TurB in Pseudomonas putida KT2440.,Suzuki-Minakuchi C, Kawazuma K, Matsuzawa J, Vasileva D, Fujimoto Z, Terada T, Okada K, Nojiri H FEBS Lett. 2016 Oct 6. doi: 10.1002/1873-3468.12425. PMID:27709616<ref>PMID:27709616</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 5b52" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 06:38, 31 May 2023

OCA — Wed, 31 May 2023 06:38:59 GMT

←Older revision		Revision as of 06:38, 31 May 2023
Line 3:		Line 3:
	<StructureSection load='5b52' size='340' side='right'caption='[[5b52]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='5b52' size='340' side='right'caption='[[5b52]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5b52]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Psepk Psepk~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B52 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5B52 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5b52]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B52 FirstGlance]. <br>
-	</td></tr>~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PP_3765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=160488 PSEPK])</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b52 OCA], [https://pdbe.org/5b52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b52 RCSB], [https://www.ebi.ac.uk/pdbsum/5b52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b52 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5b52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b52 OCA], [~~http~~://pdbe.org/5b52 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5b52 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5b52 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5b52 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q88GF9_PSEPK Q88GF9_PSEPK]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Psepk~~]]	+	[[Category: Pseudomonas putida KT2440]]
-	[[Category: Nojiri, H]]	+	[[Category: Nojiri H]]
-	[[Category: Suzuki-Minakuchi, C]]	+	[[Category: Suzuki-Minakuchi C]]
-	~~[[Category: Nucleoid associated protein]]~~	+
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcriptional regulator~~]]	+

OCA at 10:04, 26 February 2020

OCA — Wed, 26 Feb 2020 10:04:58 GMT

←Older revision		Revision as of 10:04, 26 February 2020
Line 1:		Line 1:

	==Crystal structure of the N-terminal domain of H-NS family protein TurB==		==Crystal structure of the N-terminal domain of H-NS family protein TurB==
-	<StructureSection load='5b52' size='340' side='right' caption='[[5b52]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='5b52' size='340' side='right'caption='[[5b52]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5b52]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B52 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B52 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5b52]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Psepk Psepk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B52 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B52 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b52 OCA], [http://pdbe.org/5b52 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b52 RCSB], [http://www.ebi.ac.uk/pdbsum/5b52 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b52 ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PP_3765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=160488 PSEPK])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b52 OCA], [http://pdbe.org/5b52 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b52 RCSB], [http://www.ebi.ac.uk/pdbsum/5b52 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b52 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 19:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Psepk]]
	[[Category: Nojiri, H]]		[[Category: Nojiri, H]]
	[[Category: Suzuki-Minakuchi, C]]		[[Category: Suzuki-Minakuchi, C]]

OCA at 17:24, 19 October 2016

OCA — Wed, 19 Oct 2016 17:24:44 GMT

←Older revision		Revision as of 17:24, 19 October 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5b52 is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of the N-terminal domain of H-NS family protein TurB==
		+	<StructureSection load='5b52' size='340' side='right' caption='[[5b52]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5b52]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B52 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B52 FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b52 OCA], [http://pdbe.org/5b52 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b52 RCSB], [http://www.ebi.ac.uk/pdbsum/5b52 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b52 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	H-NS family proteins play key roles in bacterial nucleoid compaction and global transcription. MvaT homologues in Pseudomonas have almost negligible amino acid sequence identity with H-NS, but can complement an hns-related phenotype of Escherichia coli. Here, we report the crystal structure of the N-terminal dimerization/oligomerization domain of TurB, an MvaT homologue in Pseudomonas putida KT2440. Our data identify two dimerization sites; the structure of the central dimerization site is almost the same as the corresponding region of H-NS, whereas the terminal dimerization sites are different. Our results reveal similarities and differences in dimerization and oligomerization mechanisms between H-NS and TurB.

-	~~Authors:~~ Suzuki-Minakuchi, C., ~~Nojiri~~, H.	+	Structural similarities and differences in H-NS family proteins revealed by the N-terminal structure of TurB in Pseudomonas putida KT2440.,Suzuki-Minakuchi C, Kawazuma K, Matsuzawa J, Vasileva D, Fujimoto Z, Terada T, Okada K, Nojiri H FEBS Lett. 2016 Oct 6. doi: 10.1002/1873-3468.12425. PMID:27709616<ref>PMID:27709616</ref>

-	~~Description: Crystal structure~~ of the ~~N-terminal domain~~ of ~~H-NS family protein TurB~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
		+	<div class="pdbe-citations 5b52" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Nojiri, H]]		[[Category: Nojiri, H]]
	[[Category: Suzuki-Minakuchi, C]]		[[Category: Suzuki-Minakuchi, C]]
		+	[[Category: Nucleoid associated protein]]
		+	[[Category: Transcription]]
		+	[[Category: Transcriptional regulator]]

OCA at 11:09, 15 May 2016

OCA — Sun, 15 May 2016 11:09:33 GMT

←Older revision		Revision as of 11:09, 15 May 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5b52 is ON HOLD	+	The entry 5b52 is ON HOLD until Paper Publication

	Authors: Suzuki-Minakuchi, C., Nojiri, H.		Authors: Suzuki-Minakuchi, C., Nojiri, H.

OCA: Protected "5b52" [edit=sysop:move=sysop]

OCA — Tue, 10 May 2016 20:59:38 GMT

Protected "5b52" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:59, 10 May 2016

OCA: New page: '''Unreleased structure''' The entry 5b52 is ON HOLD Authors: Suzuki-Minakuchi, C., Nojiri, H. Description: Crystal structure of the N-terminal domain of H-NS family protein TurB [[Cat...

OCA — Tue, 10 May 2016 20:59:37 GMT

New page: '''Unreleased structure''' The entry 5b52 is ON HOLD Authors: Suzuki-Minakuchi, C., Nojiri, H. Description: Crystal structure of the N-terminal domain of H-NS family protein TurB [[Cat...

New page

'''Unreleased structure'''

The entry 5b52 is ON HOLD

Authors: Suzuki-Minakuchi, C., Nojiri, H.

Description: Crystal structure of the N-terminal domain of H-NS family protein TurB
[[Category: Unreleased Structures]]
[[Category: Nojiri, H]]
[[Category: Suzuki-Minakuchi, C]]