5b68 - Revision history

OCA at 16:01, 8 November 2023

OCA — Wed, 08 Nov 2023 16:01:33 GMT

←Older revision		Revision as of 16:01, 8 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5b68]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B68 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B68 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5b68]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B68 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B68 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b68 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b68 OCA], [https://pdbe.org/5b68 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b68 RCSB], [https://www.ebi.ac.uk/pdbsum/5b68 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b68 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b68 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b68 OCA], [https://pdbe.org/5b68 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b68 RCSB], [https://www.ebi.ac.uk/pdbsum/5b68 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b68 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 06:40, 31 May 2023

OCA — Wed, 31 May 2023 06:40:06 GMT

←Older revision		Revision as of 06:40, 31 May 2023
Line 3:		Line 3:
	<StructureSection load='5b68' size='340' side='right'caption='[[5b68]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='5b68' size='340' side='right'caption='[[5b68]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5b68]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"micrococcus_glutamicus"_kinoshita_et_al._1958 "micrococcus glutamicus" kinoshita et al. 1958~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B68 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5B68 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5b68]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B68 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B68 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b68 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b68 OCA], [https://pdbe.org/5b68 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b68 RCSB], [https://www.ebi.ac.uk/pdbsum/5b68 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b68 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5b68 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b68 OCA], [~~http~~://pdbe.org/5b68 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5b68 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5b68 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5b68 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8NNA7_CORGL Q8NNA7_CORGL]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Micrococcus glutamicus kinoshita et al. 1958]]~~	+	[[Category: Corynebacterium glutamicum]]
-	~~[[Category: 4-alpha-glucanotransferase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Joo, S]]	+	[[Category: Joo S]]
-	[[Category: Kim, K J]]	+	[[Category: Kim K-J]]
-	[[Category: Kim, S]]	+	[[Category: Kim S]]
-	~~[[Category: Transferase~~]]	+

OCA at 08:47, 11 March 2020

OCA — Wed, 11 Mar 2020 08:47:00 GMT

←Older revision		Revision as of 08:47, 11 March 2020
Line 1:		Line 1:

	==Crystal structure of apo amylomaltase from Corynebacterium glutamicum==		==Crystal structure of apo amylomaltase from Corynebacterium glutamicum==
-	<StructureSection load='5b68' size='340' side='right' caption='[[5b68]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='5b68' size='340' side='right'caption='[[5b68]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5b68]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B68 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B68 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5b68]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_glutamicus"_kinoshita_et_al._1958 "micrococcus glutamicus" kinoshita et al. 1958]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B68 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B68 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Micrococcus glutamicus kinoshita et al. 1958]]
	[[Category: 4-alpha-glucanotransferase]]		[[Category: 4-alpha-glucanotransferase]]
		+	[[Category: Large Structures]]
	[[Category: Joo, S]]		[[Category: Joo, S]]
	[[Category: Kim, K J]]		[[Category: Kim, K J]]
	[[Category: Kim, S]]		[[Category: Kim, S]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 04:03, 4 August 2016

OCA — Thu, 04 Aug 2016 04:03:42 GMT

←Older revision		Revision as of 04:03, 4 August 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5b68 is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of apo amylomaltase from Corynebacterium glutamicum==
		+	<StructureSection load='5b68' size='340' side='right' caption='[[5b68]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5b68]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B68 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B68 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b68 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b68 OCA], [http://pdbe.org/5b68 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b68 RCSB], [http://www.ebi.ac.uk/pdbsum/5b68 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b68 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Amylomaltase is an essential enzyme in maltose utilization and maltodextrin metabolism, and it has been industrially used for the production of cyclodextrin and modification of starch. We determined the crystal structure of amylomaltase from Corynebacterium glutamicum (CgAM) at a resolution of 1.7 A. Although CgAM forms a dimer without NaCl, it exists as a monomer in physiological concentration of NaCl. CgAM is composed of N- and C-terminal domains, which can be further divided into two and four subdomains, respectively. It exhibits a unique structural feature at the functionally unknown N-domain and also shows two striking differences at the C-domain compared to other amylomaltases. These differences at extended edge of the substrate-binding site might affect substrate specificity for large cyclodextrin formation. The bis-tris methane and sulfate molecules bound at the substrate-binding site of our current structure mimic the binding of the hydroxyl groups of glucose bound at subsites -1 and -2, respectively.

-	~~Authors: Joo~~, S., Kim, S., ~~Kim~~, K.-J.	+	Crystal Structure of Amylomaltase from Corynebacterium glutamicum.,Joo S, Kim S, Seo H, Kim KJ J Agric Food Chem. 2016 Jul 20;64(28):5662-70. doi: 10.1021/acs.jafc.6b02296., Epub 2016 Jul 8. PMID:27366969<ref>PMID:27366969</ref>

-	~~Description: Crystal structure~~ of ~~apo amylomaltase from Corynebacterium glutamicum~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category: Unreleased Structures]]~~	+	</div>
-	~~[[Category: Kim, K.~~-~~J]]~~	+	<div class="pdbe-citations 5b68" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Kim, S~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: 4-alpha-glucanotransferase]]
	[[Category: Joo, S]]		[[Category: Joo, S]]
		+	[[Category: Kim, K J]]
		+	[[Category: Kim, S]]
		+	[[Category: Transferase]]

OCA at 09:03, 20 June 2016

OCA — Mon, 20 Jun 2016 09:03:20 GMT

←Older revision		Revision as of 09:03, 20 June 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5b68 is ON HOLD	+	The entry 5b68 is ON HOLD until Paper Publication

	Authors: Joo, S., Kim, S., Kim, K.-J.		Authors: Joo, S., Kim, S., Kim, K.-J.

OCA: Protected "5b68" [edit=sysop:move=sysop]

OCA — Wed, 01 Jun 2016 09:37:51 GMT

Protected "5b68" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:37, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5b68 is ON HOLD Authors: Joo, S., Kim, S., Kim, K.-J. Description: Crystal structure of apo amylomaltase from Corynebacterium glutamicum [[Category...

OCA — Wed, 01 Jun 2016 09:37:49 GMT

New page: '''Unreleased structure''' The entry 5b68 is ON HOLD Authors: Joo, S., Kim, S., Kim, K.-J. Description: Crystal structure of apo amylomaltase from Corynebacterium glutamicum [[Category...

New page

'''Unreleased structure'''

The entry 5b68 is ON HOLD

Authors: Joo, S., Kim, S., Kim, K.-J.

Description: Crystal structure of apo amylomaltase from Corynebacterium glutamicum
[[Category: Unreleased Structures]]
[[Category: Kim, K.-J]]
[[Category: Kim, S]]
[[Category: Joo, S]]