5bnd - Revision history

OCA at 09:07, 20 March 2024

OCA — Wed, 20 Mar 2024 09:07:54 GMT

←Older revision		Revision as of 09:07, 20 March 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5bnd]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_epidermidis_RP62A Staphylococcus epidermidis RP62A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BND FirstGlance]. <br>		<table><tr><td colspan='2'>[[5bnd]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_epidermidis_RP62A Staphylococcus epidermidis RP62A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BND FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bnd OCA], [https://pdbe.org/5bnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bnd RCSB], [https://www.ebi.ac.uk/pdbsum/5bnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bnd ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.68Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bnd OCA], [https://pdbe.org/5bnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bnd RCSB], [https://www.ebi.ac.uk/pdbsum/5bnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bnd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/Q5HN63_STAEQ Q5HN63_STAEQ]		[https://www.uniprot.org/uniprot/Q5HN63_STAEQ Q5HN63_STAEQ]
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The negatively charged bacterial polysaccharides - wall teichoic acids (WTAs) are synthesized intracellularly and exported by a two-component transporter, TagGH, comprising a transmembrane subunit TagG and an ATPase subunit TagH. We determined the crystal structure of the C-terminal domain of TagH (TagH-C) to investigate its function. The structure shows an N-terminal SH3-like subdomain wrapped by a C-terminal subdomain with an anti-parallel beta-sheet and an outer shell of alpha-helices. A stretch of positively charged surface across the subdomain interface is flanked by two negatively charged regions, suggesting a potential binding site for negatively charged polymers, such as WTAs or acidic peptide chains. This article is protected by copyright. All rights reserved.
-
-	SH3-Like Motif-Containing C-terminal Domain of Staphylococcal Teichoic Acid Transporter Suggests Possible Function.,Ko TP, Tseng ST, Lai SJ, Chen SC, Guan HH, Yang CS, Chen CJ, Chen Y Proteins. 2016 May 23. doi: 10.1002/prot.25074. PMID:27213893<ref>PMID:27213893</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 5bnd" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 06:00, 7 June 2023

OCA — Wed, 07 Jun 2023 06:00:50 GMT

←Older revision		Revision as of 06:00, 7 June 2023
Line 1:		Line 1:

	==Crystal structure of the C-terminal domain of TagH==		==Crystal structure of the C-terminal domain of TagH==
-	<StructureSection load='5bnd' size='340' side='right' caption='[[5bnd]], [[Resolution\|resolution]] 2.68Å' scene=''>	+	<StructureSection load='5bnd' size='340' side='right'caption='[[5bnd]], [[Resolution\|resolution]] 2.68Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5bnd]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Staeq Staeq~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BND OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5BND FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5bnd]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_epidermidis_RP62A Staphylococcus epidermidis RP62A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BND FirstGlance]. <br>
-	</td></tr>~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SERP1409 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176279 STAEQ])</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bnd OCA], [https://pdbe.org/5bnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bnd RCSB], [https://www.ebi.ac.uk/pdbsum/5bnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bnd ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5bnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bnd OCA], [~~http~~://pdbe.org/5bnd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5bnd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5bnd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5bnd ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q5HN63_STAEQ Q5HN63_STAEQ]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Staeq~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Chen, S C~~]]	+	[[Category: Staphylococcus epidermidis RP62A]]
-	[[Category: Chen~~, Y~~]]	+	[[Category: Chen SC]]
-	[[Category: ~~Transport protein]]~~	+	[[Category: Chen Y]]
-	~~[[Category: Transporter~~]]	+

OCA at 12:23, 6 November 2017

OCA — Mon, 06 Nov 2017 12:23:08 GMT

←Older revision		Revision as of 12:23, 6 November 2017
Line 3:		Line 3:
	<StructureSection load='5bnd' size='340' side='right' caption='[[5bnd]], [[Resolution\|resolution]] 2.68Å' scene=''>		<StructureSection load='5bnd' size='340' side='right' caption='[[5bnd]], [[Resolution\|resolution]] 2.68Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5bnd]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BND FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5bnd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Staeq Staeq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BND FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bnd OCA], [http://pdbe.org/5bnd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bnd RCSB], [http://www.ebi.ac.uk/pdbsum/5bnd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5bnd ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SERP1409 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176279 STAEQ])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bnd OCA], [http://pdbe.org/5bnd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bnd RCSB], [http://www.ebi.ac.uk/pdbsum/5bnd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5bnd ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 19:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Staeq]]
	[[Category: Chen, S C]]		[[Category: Chen, S C]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]
	[[Category: Transport protein]]		[[Category: Transport protein]]
	[[Category: Transporter]]		[[Category: Transporter]]

OCA at 02:17, 13 July 2016

OCA — Wed, 13 Jul 2016 02:17:00 GMT

←Older revision		Revision as of 02:17, 13 July 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5bnd is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of the C-terminal domain of TagH==
		+	<StructureSection load='5bnd' size='340' side='right' caption='[[5bnd]], [[Resolution\|resolution]] 2.68Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5bnd]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BND FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bnd OCA], [http://pdbe.org/5bnd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bnd RCSB], [http://www.ebi.ac.uk/pdbsum/5bnd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5bnd ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The negatively charged bacterial polysaccharides - wall teichoic acids (WTAs) are synthesized intracellularly and exported by a two-component transporter, TagGH, comprising a transmembrane subunit TagG and an ATPase subunit TagH. We determined the crystal structure of the C-terminal domain of TagH (TagH-C) to investigate its function. The structure shows an N-terminal SH3-like subdomain wrapped by a C-terminal subdomain with an anti-parallel beta-sheet and an outer shell of alpha-helices. A stretch of positively charged surface across the subdomain interface is flanked by two negatively charged regions, suggesting a potential binding site for negatively charged polymers, such as WTAs or acidic peptide chains. This article is protected by copyright. All rights reserved.

-	~~Authors: Chen, S.~~C., Chen, Y.	+	SH3-Like Motif-Containing C-terminal Domain of Staphylococcal Teichoic Acid Transporter Suggests Possible Function.,Ko TP, Tseng ST, Lai SJ, Chen SC, Guan HH, Yang CS, Chen CJ, Chen Y Proteins. 2016 May 23. doi: 10.1002/prot.25074. PMID:27213893<ref>PMID:27213893</ref>

-	~~Description: Crystal structure~~ of the ~~C-terminal domain~~ of ~~TagH~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5bnd" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chen, S C]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]
-	[[Category: ~~Chen, S.C~~]]	+	[[Category: Transport protein]]
		+	[[Category: Transporter]]

OCA at 12:25, 26 February 2016

OCA — Fri, 26 Feb 2016 12:25:08 GMT

←Older revision		Revision as of 12:25, 26 February 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5bnd is ON HOLD	+	The entry 5bnd is ON HOLD until Paper Publication

	Authors: Chen, S.C., Chen, Y.		Authors: Chen, S.C., Chen, Y.

OCA at 11:37, 10 February 2016

OCA — Wed, 10 Feb 2016 11:37:22 GMT

←Older revision		Revision as of 11:37, 10 February 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5bnd is ON HOLD ~~until Paper Publication~~	+	The entry 5bnd is ON HOLD

	Authors: Chen, S.C., Chen, Y.		Authors: Chen, S.C., Chen, Y.

OCA at 13:42, 17 June 2015

OCA — Wed, 17 Jun 2015 13:42:40 GMT

←Older revision		Revision as of 13:42, 17 June 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5bnd is ON HOLD	+	The entry 5bnd is ON HOLD until Paper Publication

	Authors: Chen, S.C., Chen, Y.		Authors: Chen, S.C., Chen, Y.

OCA at 12:47, 10 June 2015

OCA — Wed, 10 Jun 2015 12:47:28 GMT

←Older revision		Revision as of 12:47, 10 June 2015
Line 3:		Line 3:
	The entry 5bnd is ON HOLD		The entry 5bnd is ON HOLD

-	Authors: Chen, S. C., Chen, Y.	+	Authors: Chen, S.C., Chen, Y.

	Description: Crystal structure of the C-terminal domain of TagH		Description: Crystal structure of the C-terminal domain of TagH
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Chen, S. C]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]
		+	[[Category: Chen, S.C]]

OCA: Protected "5bnd" [edit=sysop:move=sysop]

OCA — Wed, 03 Jun 2015 11:39:41 GMT

Protected "5bnd" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:39, 3 June 2015

OCA: New page: '''Unreleased structure''' The entry 5bnd is ON HOLD Authors: Chen, S. C., Chen, Y. Description: Crystal structure of the C-terminal domain of TagH Category: Unreleased Structures ...

OCA — Wed, 03 Jun 2015 11:39:40 GMT

New page: '''Unreleased structure''' The entry 5bnd is ON HOLD Authors: Chen, S. C., Chen, Y. Description: Crystal structure of the C-terminal domain of TagH Category: Unreleased Structures ...

New page

'''Unreleased structure'''

The entry 5bnd is ON HOLD

Authors: Chen, S. C., Chen, Y.

Description: Crystal structure of the C-terminal domain of TagH
[[Category: Unreleased Structures]]
[[Category: Chen, S. C]]
[[Category: Chen, Y]]