5c6i - Revision history

OCA at 11:18, 10 January 2024

OCA — Wed, 10 Jan 2024 11:18:51 GMT

←Older revision		Revision as of 11:18, 10 January 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5c6i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5C6I FirstGlance]. <br>		<table><tr><td colspan='2'>[[5c6i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5C6I FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [https://pdbe.org/5c6i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [https://www.ebi.ac.uk/pdbsum/5c6i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6i ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [https://pdbe.org/5c6i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [https://www.ebi.ac.uk/pdbsum/5c6i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6i ProSAT]</span></td></tr>
	</table>		</table>

OCA at 06:21, 7 June 2023

OCA — Wed, 07 Jun 2023 06:21:52 GMT

←Older revision		Revision as of 06:21, 7 June 2023
Line 3:		Line 3:
	<StructureSection load='5c6i' size='340' side='right'caption='[[5c6i]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='5c6i' size='340' side='right'caption='[[5c6i]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5c6i]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5C6I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5c6i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5C6I FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [https://pdbe.org/5c6i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [https://www.ebi.ac.uk/pdbsum/5c6i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6i ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [~~http~~://pdbe.org/5c6i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5c6i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6i ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 28:		Line 27:
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Barends TRM]]
-	[[Category: Barends~~, T R.M~~]]	+	[[Category: Barty A]]
-	[[Category: Barty, A]]	+	[[Category: Botha S]]
-	[[Category: Botha, S]]	+	[[Category: Boutet S]]
-	[[Category: Boutet, S]]	+	[[Category: Caleman C]]
-	[[Category: Caleman, C]]	+	[[Category: Chapman HN]]
-	[[Category: Chapman~~, H N~~]]	+	[[Category: Doak RB]]
-	[[Category: Doak~~, R B~~]]	+	[[Category: Galli L]]
-	[[Category: Galli, L]]	+	[[Category: Nanao MH]]
-	[[Category: Nanao~~, M H~~]]	+	[[Category: Nass K]]
-	[[Category: Nass, K]]	+	[[Category: Santra R]]
-	[[Category: Santra, R]]	+	[[Category: Schlichting I]]
-	[[Category: Schlichting, I]]	+	[[Category: Shoeman RL]]
-	[[Category: Shoeman~~, R L~~]]	+	[[Category: Son S-K]]
-	[[Category: Son, S K]]	+	[[Category: Timneanu N]]
-	[[Category: Timneanu, N]]	+	[[Category: White TA]]
-	[[Category: White~~, T A]]~~	+
-	~~[[Category: Gadoteridol]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Xfel~~]]	+

OCA at 07:06, 19 August 2020

OCA — Wed, 19 Aug 2020 07:06:18 GMT

←Older revision		Revision as of 07:06, 19 August 2020
Line 1:		Line 1:

	==Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation==		==Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation==
-	<StructureSection load='5c6i' size='340' side='right' caption='[[5c6i]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='5c6i' size='340' side='right'caption='[[5c6i]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5c6i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6I OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5C6I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5c6i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6I OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5C6I FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [http://pdbe.org/5c6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [http://www.ebi.ac.uk/pdbsum/5c6i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6i ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [http://pdbe.org/5c6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [http://www.ebi.ac.uk/pdbsum/5c6i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Barends, T R.M]]		[[Category: Barends, T R.M]]

OCA at 08:45, 14 November 2018

OCA — Wed, 14 Nov 2018 08:45:58 GMT

←Older revision		Revision as of 08:45, 14 November 2018
Line 1:		Line 1:
		+
	==Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation==		==Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation==
	<StructureSection load='5c6i' size='340' side='right' caption='[[5c6i]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='5c6i' size='340' side='right' caption='[[5c6i]], [[Resolution\|resolution]] 1.90Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [http://pdbe.org/5c6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [http://www.ebi.ac.uk/pdbsum/5c6i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [http://pdbe.org/5c6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [http://www.ebi.ac.uk/pdbsum/5c6i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 5c6i" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5c6i" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:26, 9 December 2015

OCA — Wed, 09 Dec 2015 07:26:54 GMT

←Older revision		Revision as of 07:26, 9 December 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [http://www.ebi.ac.uk/pdbsum/5c6i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [http://pdbe.org/5c6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [http://www.ebi.ac.uk/pdbsum/5c6i PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>		[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	X-ray free-electron lasers (XFELs) show great promise for macromolecular structure determination from sub-micrometre-sized crystals, using the emerging method of serial femtosecond crystallography. The extreme brightness of the XFEL radiation can multiply ionize most, if not all, atoms in a protein, causing their scattering factors to change during the pulse, with a preferential 'bleaching' of heavy atoms. This paper investigates the effects of electronic damage on experimental data collected from a Gd derivative of lysozyme microcrystals at different X-ray intensities, and the degree of ionization of Gd atoms is quantified from phased difference Fourier maps. A pattern sorting scheme is proposed to maximize the ionization contrast and the way in which the local electronic damage can be used for a new experimental phasing method is discussed.
		+
		+	Towards phasing using high X-ray intensity.,Galli L, Son SK, Barends TR, White TA, Barty A, Botha S, Boutet S, Caleman C, Doak RB, Nanao MH, Nass K, Shoeman RL, Timneanu N, Santra R, Schlichting I, Chapman HN IUCrJ. 2015 Sep 30;2(Pt 6):627-634. eCollection 2015 Nov 1. PMID:26594370<ref>PMID:26594370</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5c6i" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:57, 8 July 2015

OCA — Wed, 08 Jul 2015 14:57:15 GMT

←Older revision		Revision as of 14:57, 8 July 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation==
-		+	<StructureSection load='5c6i' size='340' side='right' caption='[[5c6i]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~The entry~~ 5c6i is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5c6i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5C6I FirstGlance]. <br>
-	~~Authors~~: ~~Galli, L~~.~~, Barends, T~~.R.M.~~, Son, S~~.-K.~~, White, T~~.A.~~, Barty, A~~.~~, Botha, S~~., ~~Boutet~~, S., ~~Caleman~~, C., ~~Doak~~, R.B., ~~Nanao, M~~.H.~~, Nass, K~~.~~, Shoeman, R~~.L.~~, Timneanu, N~~.~~, Santra, R~~., ~~Schlichting~~, I., ~~Chapman, H~~.N.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>
-		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	~~Description~~: ~~Crystal Structure of Gadolinium derivative of HEWL solved using Free~~-~~Electron Laser radiation~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5c6i RCSB], [http://www.ebi.ac.uk/pdbsum/5c6i PDBsum]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: ~~Santra, R~~]]	+	== Function ==
-	[[Category: ~~Caleman~~, C]]	+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Lysozyme]]
		+	[[Category: Barends, T R.M]]
	[[Category: Barty, A]]		[[Category: Barty, A]]
-	[[Category: Galli, L]]
-	[[Category: Shoeman, R.L]]
-	[[Category: Nanao, M.H]]
-	[[Category: Timneanu, N]]
	[[Category: Botha, S]]		[[Category: Botha, S]]
-	[[Category: Nass, K]]
-	[[Category: Son, S.-K]]
-	[[Category: White, T.A]]
-	[[Category: Barends, T.R.M]]
	[[Category: Boutet, S]]		[[Category: Boutet, S]]
-	[[Category: Chapman, H.N]]	+	[[Category: Caleman, C]]
-	[[Category: Doak, R.B]]	+	[[Category: Chapman, H N]]
		+	[[Category: Doak, R B]]
		+	[[Category: Galli, L]]
		+	[[Category: Nanao, M H]]
		+	[[Category: Nass, K]]
		+	[[Category: Santra, R]]
	[[Category: Schlichting, I]]		[[Category: Schlichting, I]]
		+	[[Category: Shoeman, R L]]
		+	[[Category: Son, S K]]
		+	[[Category: Timneanu, N]]
		+	[[Category: White, T A]]
		+	[[Category: Gadoteridol]]
		+	[[Category: Hydrolase]]
		+	[[Category: Xfel]]

OCA: Protected "5c6i" [edit=sysop:move=sysop]

OCA — Wed, 01 Jul 2015 11:12:38 GMT

Protected "5c6i" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:12, 1 July 2015

OCA: New page: '''Unreleased structure''' The entry 5c6i is ON HOLD Authors: Galli, L., Barends, T.R.M., Son, S.-K., White, T.A., Barty, A., Botha, S., Boutet, S., Caleman, C., Doak, R.B., Nanao, M.H....

OCA — Wed, 01 Jul 2015 11:12:37 GMT

New page: '''Unreleased structure''' The entry 5c6i is ON HOLD Authors: Galli, L., Barends, T.R.M., Son, S.-K., White, T.A., Barty, A., Botha, S., Boutet, S., Caleman, C., Doak, R.B., Nanao, M.H....

New page

'''Unreleased structure'''

The entry 5c6i is ON HOLD

Authors: Galli, L., Barends, T.R.M., Son, S.-K., White, T.A., Barty, A., Botha, S., Boutet, S., Caleman, C., Doak, R.B., Nanao, M.H., Nass, K., Shoeman, R.L., Timneanu, N., Santra, R., Schlichting, I., Chapman, H.N.

Description: Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation
[[Category: Unreleased Structures]]
[[Category: Santra, R]]
[[Category: Caleman, C]]
[[Category: Barty, A]]
[[Category: Galli, L]]
[[Category: Shoeman, R.L]]
[[Category: Nanao, M.H]]
[[Category: Timneanu, N]]
[[Category: Botha, S]]
[[Category: Nass, K]]
[[Category: Son, S.-K]]
[[Category: White, T.A]]
[[Category: Barends, T.R.M]]
[[Category: Boutet, S]]
[[Category: Chapman, H.N]]
[[Category: Doak, R.B]]
[[Category: Schlichting, I]]