5c9p - Revision history

OCA at 11:19, 10 January 2024

OCA — Wed, 10 Jan 2024 11:19:21 GMT

←Older revision		Revision as of 11:19, 10 January 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5c9p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photorhabdus_luminescens Photorhabdus luminescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5C9P FirstGlance]. <br>		<table><tr><td colspan='2'>[[5c9p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photorhabdus_luminescens Photorhabdus luminescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5C9P FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5c9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c9p OCA], [https://pdbe.org/5c9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5c9p RCSB], [https://www.ebi.ac.uk/pdbsum/5c9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5c9p ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5c9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c9p OCA], [https://pdbe.org/5c9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5c9p RCSB], [https://www.ebi.ac.uk/pdbsum/5c9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5c9p ProSAT]</span></td></tr>
	</table>		</table>

OCA at 06:25, 7 June 2023

OCA — Wed, 07 Jun 2023 06:25:43 GMT

←Older revision		Revision as of 06:25, 7 June 2023
Line 3:		Line 3:
	<StructureSection load='5c9p' size='340' side='right'caption='[[5c9p]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='5c9p' size='340' side='right'caption='[[5c9p]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5c9p]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_29999 Atcc 29999~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C9P OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5C9P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5c9p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photorhabdus_luminescens Photorhabdus luminescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5C9P FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5c9l\|5c9l]], [[5c9o\|5c9o]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5c9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c9p OCA], [https://pdbe.org/5c9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5c9p RCSB], [https://www.ebi.ac.uk/pdbsum/5c9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5c9p ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">plu0732 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29488 ATCC 29999])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5c9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c9p OCA], [~~http~~://pdbe.org/5c9p PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5c9p RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5c9p PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5c9p ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q7N8J0_PHOLL Q7N8J0_PHOLL]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 29999]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Demo, G]]	+	[[Category: Photorhabdus luminescens]]
-	[[Category: Dobes, P]]	+	[[Category: Demo G]]
-	[[Category: Hyrsl, P]]	+	[[Category: Dobes P]]
-	[[Category: Kumar, A]]	+	[[Category: Hyrsl P]]
-	[[Category: Sykorova, P]]	+	[[Category: Kumar A]]
-	[[Category: Wimmerova, M]]	+	[[Category: Sykorova P]]
-	~~[[Category: Fucose-specific]]~~	+	[[Category: Wimmerova M]]
-	~~[[Category: Lectin]]~~	+
-	~~[[Category: Seven-bladed beta-propeller]]~~	+
-	~~[[Category: Sugar binding protein~~]]	+

OCA at 11:29, 27 March 2020

OCA — Fri, 27 Mar 2020 11:29:11 GMT

←Older revision		Revision as of 11:29, 27 March 2020
Line 1:		Line 1:

	==Crystal structure of recombinant PLL lectin complexed with L-fucose from Photorhabdus luminescens at 1.75 A resolution==		==Crystal structure of recombinant PLL lectin complexed with L-fucose from Photorhabdus luminescens at 1.75 A resolution==
-	<StructureSection load='5c9p' size='340' side='right' caption='[[5c9p]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='5c9p' size='340' side='right'caption='[[5c9p]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5c9p]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C9P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5C9P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5c9p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_29999 Atcc 29999]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C9P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5C9P FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5c9l\|5c9l]], [[5c9o\|5c9o]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5c9l\|5c9l]], [[5c9o\|5c9o]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">plu0732 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29488 ATCC 29999])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c9p OCA], [http://pdbe.org/5c9p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c9p RCSB], [http://www.ebi.ac.uk/pdbsum/5c9p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c9p ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c9p OCA], [http://pdbe.org/5c9p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c9p RCSB], [http://www.ebi.ac.uk/pdbsum/5c9p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c9p ProSAT]</span></td></tr>
	</table>		</table>
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 29999]]
		+	[[Category: Large Structures]]
	[[Category: Demo, G]]		[[Category: Demo, G]]
	[[Category: Dobes, P]]		[[Category: Dobes, P]]

OCA at 11:07, 2 November 2016

OCA — Wed, 02 Nov 2016 11:07:50 GMT

←Older revision		Revision as of 11:07, 2 November 2016
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c9p OCA], [http://pdbe.org/5c9p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c9p RCSB], [http://www.ebi.ac.uk/pdbsum/5c9p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c9p ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c9p OCA], [http://pdbe.org/5c9p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c9p RCSB], [http://www.ebi.ac.uk/pdbsum/5c9p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c9p ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Photorhabdus luminescens is known for its symbiosis with the entomopathogenic nematode Heterorhabditis bacteriophora and its pathogenicity towards insect larvae. A hypothetical protein from P. luminescens was identified, purified from the native source and characterized as an L-fucose-binding lectin, named PLL. Glycan array and biochemical characterization data revealed PLL to be specific towards L-fucose and the disaccharide glycan 3,6-O-Me2-Glcbeta1-4(2,3-O-Me2)Rhaalpha-O-(p-C6H4)-OCH2CH2NH2. PLL was discovered to be a homo-tetramer with an inter-subunit disulphide bridge. The crystal structures of native (ntPLL) and recombinant PLL (rPLL) revealed a seven-bladed beta-propeller fold creating 7 putative fucose-binding sites per monomer. The crystal structure of the rPLL/L-fucose complex confirmed at least three sites being fucose-binding. Moreover, the crystal structures indicated that some of the other sites are masked either by the tetrameric nature of the lectin or by incorporation of the C-terminus of the lectin into one of these sites. PLL exhibited a binding ability to insect haemocytes and the cuticular surface of a nematode, Heterorhabditis bacteriophora.
		+
		+	A Novel Fucose-Binding Lectin from Photorhabdus luminescens (PLL) with an Unusual Hepta-Bladed beta-Propeller Tetrameric Structure.,Kumar A, Sykorova P, Demo G, Dobes P, Hyrsl P, Wimmerova M J Biol Chem. 2016 Oct 7. pii: jbc.M115.693473. PMID:27758853<ref>PMID:27758853</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5c9p" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 00:55, 20 October 2016

OCA — Thu, 20 Oct 2016 00:55:33 GMT

←Older revision		Revision as of 00:55, 20 October 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 5c9p is ON HOLD until Paper Publication~~	+	==Crystal structure of recombinant PLL lectin complexed with L-fucose from Photorhabdus luminescens at 1.75 A resolution==
-		+	<StructureSection load='5c9p' size='340' side='right' caption='[[5c9p]], [[Resolution\|resolution]] 1.75Å' scene=''>
-	~~Authors: Kumar, A., Sykorova, P., Demo, G., Dobes, P., Hyrsl, P., Wimmerova, M.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5c9p]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C9P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5C9P FirstGlance]. <br>
-	~~Description:~~ Crystal structure of recombinant PLL lectin complexed with L-fucose from Photorhabdus luminescens at 1.75 A resolution	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5c9l\|5c9l]], [[5c9o\|5c9o]]</td></tr>
-	[[~~Category~~: ~~Wimmerova~~, M]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c9p OCA], [http://pdbe.org/5c9p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c9p RCSB], [http://www.ebi.ac.uk/pdbsum/5c9p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c9p ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Demo, G]]		[[Category: Demo, G]]
	[[Category: Dobes, P]]		[[Category: Dobes, P]]
	[[Category: Hyrsl, P]]		[[Category: Hyrsl, P]]
		+	[[Category: Kumar, A]]
	[[Category: Sykorova, P]]		[[Category: Sykorova, P]]
-	[[Category: ~~Kumar~~, A]]	+	[[Category: Wimmerova, M]]
		+	[[Category: Fucose-specific]]
		+	[[Category: Lectin]]
		+	[[Category: Seven-bladed beta-propeller]]
		+	[[Category: Sugar binding protein]]

OCA at 10:24, 16 December 2015

OCA — Wed, 16 Dec 2015 10:24:45 GMT

←Older revision		Revision as of 10:24, 16 December 2015
Line 7:		Line 7:
	Description: Crystal structure of recombinant PLL lectin complexed with L-fucose from Photorhabdus luminescens at 1.75 A resolution		Description: Crystal structure of recombinant PLL lectin complexed with L-fucose from Photorhabdus luminescens at 1.75 A resolution
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Dobes, P]]
-	[[Category: Hyrsl, P]]
-	[[Category: Kumar, A]]
	[[Category: Wimmerova, M]]		[[Category: Wimmerova, M]]
	[[Category: Demo, G]]		[[Category: Demo, G]]
		+	[[Category: Dobes, P]]
		+	[[Category: Hyrsl, P]]
	[[Category: Sykorova, P]]		[[Category: Sykorova, P]]
		+	[[Category: Kumar, A]]

OCA: Protected "5c9p" [edit=sysop:move=sysop]

OCA — Wed, 08 Jul 2015 13:52:54 GMT

Protected "5c9p" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:52, 8 July 2015

OCA: New page: '''Unreleased structure''' The entry 5c9p is ON HOLD until Paper Publication Authors: Kumar, A., Sykorova, P., Demo, G., Dobes, P., Hyrsl, P., Wimmerova, M. Description: Crystal struct...

OCA — Wed, 08 Jul 2015 13:52:53 GMT

New page: '''Unreleased structure''' The entry 5c9p is ON HOLD until Paper Publication Authors: Kumar, A., Sykorova, P., Demo, G., Dobes, P., Hyrsl, P., Wimmerova, M. Description: Crystal struct...

New page

'''Unreleased structure'''

The entry 5c9p is ON HOLD until Paper Publication

Authors: Kumar, A., Sykorova, P., Demo, G., Dobes, P., Hyrsl, P., Wimmerova, M.

Description: Crystal structure of recombinant PLL lectin complexed with L-fucose from Photorhabdus luminescens at 1.75 A resolution
[[Category: Unreleased Structures]]
[[Category: Dobes, P]]
[[Category: Hyrsl, P]]
[[Category: Kumar, A]]
[[Category: Wimmerova, M]]
[[Category: Demo, G]]
[[Category: Sykorova, P]]