5ck7 - Revision history

OCA at 08:38, 27 September 2023

OCA — Wed, 27 Sep 2023 08:38:34 GMT

←Older revision		Revision as of 08:38, 27 September 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5ck7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CK7 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5ck7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CK7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.99Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ck7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck7 OCA], [https://pdbe.org/5ck7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ck7 RCSB], [https://www.ebi.ac.uk/pdbsum/5ck7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ck7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck7 OCA], [https://pdbe.org/5ck7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ck7 RCSB], [https://www.ebi.ac.uk/pdbsum/5ck7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck7 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 12:10, 14 June 2023

OCA — Wed, 14 Jun 2023 12:10:58 GMT

←Older revision		Revision as of 12:10, 14 June 2023
Line 3:		Line 3:
	<StructureSection load='5ck7' size='340' side='right'caption='[[5ck7]], [[Resolution\|resolution]] 2.99Å' scene=''>		<StructureSection load='5ck7' size='340' side='right'caption='[[5ck7]], [[Resolution\|resolution]] 2.99Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ck7]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Lk3_transgenic_mice Lk3 transgenic mice~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK7 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5CK7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ck7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CK7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ccf\|5ccf]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ck7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck7 OCA], [https://pdbe.org/5ck7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ck7 RCSB], [https://www.ebi.ac.uk/pdbsum/5ck7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck7 ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Adpgk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/ADP-specific_glucokinase ADP-specific glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.147 2.7.1.147] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ck7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck7 OCA], [~~http~~://pdbe.org/5ck7 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5ck7 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5ck7 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck7 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/ADPGK_MOUSE ADPGK_MOUSE]] Catalyzes the phosphorylation of D-glucose to D-glucose 6-phosphate using ADP as the phosphate donor. GDP and CDP can replace ADP, but with reduced efficiency.	+	[https://www.uniprot.org/uniprot/ADPGK_MOUSE ADPGK_MOUSE] Catalyzes the phosphorylation of D-glucose to D-glucose 6-phosphate using ADP as the phosphate donor. GDP and CDP can replace ADP, but with reduced efficiency.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ADP-specific glucokinase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Lk3 transgenic mice~~]]	+	[[Category: Mus musculus]]
-	[[Category: Richter~~, J P~~]]	+	[[Category: Richter JP]]
-	[[Category: Ronimus~~, R S~~]]	+	[[Category: Ronimus RS]]
-	[[Category: Sutherland-Smith~~, A J]]~~	+	[[Category: Sutherland-Smith AJ]]
-	~~[[Category: Adpgk]]~~	+
-	~~[[Category: Amp]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: Ribokinase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 06:21, 19 June 2019

OCA — Wed, 19 Jun 2019 06:21:52 GMT

←Older revision		Revision as of 06:21, 19 June 2019
Line 1:		Line 1:
		+
	==Mouse ADP-dependent Glucokinase; AMP bound==		==Mouse ADP-dependent Glucokinase; AMP bound==
-	<StructureSection load='5ck7' size='340' side='right' caption='[[5ck7]], [[Resolution\|resolution]] 2.99Å' scene=''>	+	<StructureSection load='5ck7' size='340' side='right'caption='[[5ck7]], [[Resolution\|resolution]] 2.99Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ck7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CK7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ck7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CK7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ccf\|5ccf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ccf\|5ccf]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Adpgk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/ADP-specific_glucokinase ADP-specific glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.147 2.7.1.147] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/ADP-specific_glucokinase ADP-specific glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.147 2.7.1.147] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ck7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck7 OCA], [http://pdbe.org/5ck7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ck7 RCSB], [http://www.ebi.ac.uk/pdbsum/5ck7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ck7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck7 OCA], [http://pdbe.org/5ck7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ck7 RCSB], [http://www.ebi.ac.uk/pdbsum/5ck7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ck7 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/ADPGK_MOUSE ADPGK_MOUSE]] Catalyzes the phosphorylation of D-glucose to D-glucose 6-phosphate using ADP as the phosphate donor. GDP and CDP can replace ADP, but with reduced efficiency.		[[http://www.uniprot.org/uniprot/ADPGK_MOUSE ADPGK_MOUSE]] Catalyzes the phosphorylation of D-glucose to D-glucose 6-phosphate using ADP as the phosphate donor. GDP and CDP can replace ADP, but with reduced efficiency.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The enzyme-catalyzed phosphorylation of glucose to glucose-6-phosphate is a reaction central to the metabolism of all life. ADP-dependent glucokinase (ADPGK) catalyzes glucose-6-phosphate production, utilizing ADP as a phosphoryl donor in contrast to the more well characterized ATP-requiring hexokinases. ADPGK is found in Archaea and metazoa; in Archaea, ADPGK participates in a glycolytic role, but a function in most eukaryotic cell types remains unknown. We have determined structures of the eukaryotic ADPGK revealing a ribokinase-like tertiary fold similar to archaeal orthologues but with significant differences in some secondary structural elements. Both the unliganded and the AMP-bound ADPGK structures are in the "open" conformation. The structures reveal the presence of a disulfide bond between conserved cysteines that is positioned at the nucleotide-binding loop of eukaryotic ADPGK. The AMP-bound ADPGK structure defines the nucleotide-binding site with one of the disulfide bond cysteines coordinating the AMP with its main chain atoms, a nucleotide-binding motif that appears unique to eukaryotic ADPGKs. Key amino acids at the active site are structurally conserved between mammalian and archaeal ADPGK, and site-directed mutagenesis has confirmed residues essential for enzymatic activity. ADPGK is substrate inhibited by high glucose concentration and shows high specificity for glucose, with no activity for other sugars, as determined by NMR spectroscopy, including 2-deoxyglucose, the glucose analogue used for tumor detection by positron emission tomography.
		+
		+	The Structural and Functional Characterization of Mammalian ADP-dependent Glucokinase.,Richter JP, Goroncy AK, Ronimus RS, Sutherland-Smith AJ J Biol Chem. 2016 Feb 19;291(8):3694-704. doi: 10.1074/jbc.M115.679902. Epub 2015, Nov 10. PMID:26555263<ref>PMID:26555263</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5ck7" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ADP-specific glucokinase]]		[[Category: ADP-specific glucokinase]]
		+	[[Category: Large Structures]]
		+	[[Category: Lk3 transgenic mice]]
	[[Category: Richter, J P]]		[[Category: Richter, J P]]
	[[Category: Ronimus, R S]]		[[Category: Ronimus, R S]]

OCA at 18:59, 1 December 2015

OCA — Tue, 01 Dec 2015 18:59:50 GMT

←Older revision		Revision as of 18:59, 1 December 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Mouse ADP-dependent Glucokinase; AMP bound==
-		+	<StructureSection load='5ck7' size='340' side='right' caption='[[5ck7]], [[Resolution\|resolution]] 2.99Å' scene=''>
-	~~The entry~~ 5ck7 is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5ck7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CK7 FirstGlance]. <br>
-	~~Authors~~: ~~Richter~~, J.P., ~~Ronimus~~, R.S., ~~Sutherland~~-~~Smith~~, ~~A.J~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ccf\|5ccf]]</td></tr>
-	~~Description~~:	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/ADP-specific_glucokinase ADP-specific glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.147 2.7.1.147] </span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ck7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ck7 OCA], [http://pdbe.org/5ck7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ck7 RCSB], [http://www.ebi.ac.uk/pdbsum/5ck7 PDBsum]</span></td></tr>
-	[[Category: Ronimus, R.S]]	+	</table>
-	[[Category: Sutherland-Smith, A.J]]	+	== Function ==
-	[[Category: ~~Richter, J.P~~]]	+	[[http://www.uniprot.org/uniprot/ADPGK_MOUSE ADPGK_MOUSE]] Catalyzes the phosphorylation of D-glucose to D-glucose 6-phosphate using ADP as the phosphate donor. GDP and CDP can replace ADP, but with reduced efficiency.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: ADP-specific glucokinase]]
		+	[[Category: Richter, J P]]
		+	[[Category: Ronimus, R S]]
		+	[[Category: Sutherland-Smith, A J]]
		+	[[Category: Adpgk]]
		+	[[Category: Amp]]
		+	[[Category: Kinase]]
		+	[[Category: Ribokinase]]
		+	[[Category: Transferase]]

OCA: Protected "5ck7" [edit=sysop:move=sysop]

OCA — Wed, 22 Jul 2015 13:14:58 GMT

Protected "5ck7" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:14, 22 July 2015

OCA: New page: '''Unreleased structure''' The entry 5ck7 is ON HOLD Authors: Richter, J.P., Ronimus, R.S., Sutherland-Smith, A.J. Description: Category: Unreleased Structures [[Category: Ronimus...

OCA — Wed, 22 Jul 2015 13:14:57 GMT

New page: '''Unreleased structure''' The entry 5ck7 is ON HOLD Authors: Richter, J.P., Ronimus, R.S., Sutherland-Smith, A.J. Description: Category: Unreleased Structures [[Category: Ronimus...

New page

'''Unreleased structure'''

The entry 5ck7 is ON HOLD

Authors: Richter, J.P., Ronimus, R.S., Sutherland-Smith, A.J.

Description:
[[Category: Unreleased Structures]]
[[Category: Ronimus, R.S]]
[[Category: Sutherland-Smith, A.J]]
[[Category: Richter, J.P]]