5cvz - Revision history

OCA at 08:40, 27 September 2023

OCA — Wed, 27 Sep 2023 08:40:58 GMT

←Older revision		Revision as of 08:40, 27 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5cvz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Panicum_mosaic_satellite_virus Panicum mosaic satellite virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CVZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[5cvz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Panicum_mosaic_satellite_virus Panicum mosaic satellite virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CVZ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cvz OCA], [https://pdbe.org/5cvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cvz RCSB], [https://www.ebi.ac.uk/pdbsum/5cvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cvz ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.3Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cvz OCA], [https://pdbe.org/5cvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cvz RCSB], [https://www.ebi.ac.uk/pdbsum/5cvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cvz ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 10:10, 21 June 2023

OCA — Wed, 21 Jun 2023 10:10:20 GMT

←Older revision		Revision as of 10:10, 21 June 2023
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	<StructureSection load='5cvz' size='340' side='right'caption='[[5cvz]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='5cvz' size='340' side='right'caption='[[5cvz]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5cvz]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Panicum_mosaic_satellite_virus Panicum mosaic satellite virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CVZ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5CVZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5cvz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Panicum_mosaic_satellite_virus Panicum mosaic satellite virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CVZ FirstGlance]. <br>
-	</td></tr>~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1stm\|1stm]], [[5cw0\|5cw0]]</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cvz OCA], [https://pdbe.org/5cvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cvz RCSB], [https://www.ebi.ac.uk/pdbsum/5cvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cvz ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5cvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cvz OCA], [~~http~~://pdbe.org/5cvz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5cvz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5cvz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5cvz ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/COAT_SPMV COAT_SPMV]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 5cvz" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5cvz" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Panicum mosaic satellite virus]]		[[Category: Panicum mosaic satellite virus]]
-	[[Category: Day, J]]	+	[[Category: Day J]]
-	[[Category: Larson~~, S B~~]]	+	[[Category: Larson SB]]
-	[[Category: Makino~~, D L~~]]	+	[[Category: Makino DL]]
-	[[Category: McPherson, A]]	+	[[Category: McPherson A]]
-	~~[[Category: Capsid protein]]~~	+
-	~~[[Category: Glutaraldehyde cross-linked]]~~	+
-	~~[[Category: Satellite virus]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 11:16, 25 December 2019

OCA — Wed, 25 Dec 2019 11:16:34 GMT

←Older revision		Revision as of 11:16, 25 December 2019
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	==Investigation of RNA structure in satellite panicum mosaic virus - glutaraldehyde treated==		==Investigation of RNA structure in satellite panicum mosaic virus - glutaraldehyde treated==
-	<StructureSection load='5cvz' size='340' side='right' caption='[[5cvz]], [[Resolution\|resolution]] 3.30Å' scene=''>	+	<StructureSection load='5cvz' size='340' side='right'caption='[[5cvz]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5cvz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Panicum_mosaic_satellite_virus Panicum mosaic satellite virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CVZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[5cvz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Panicum_mosaic_satellite_virus Panicum mosaic satellite virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CVZ FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Panicum mosaic satellite virus]]		[[Category: Panicum mosaic satellite virus]]
	[[Category: Day, J]]		[[Category: Day, J]]

OCA at 06:58, 11 October 2017

OCA — Wed, 11 Oct 2017 06:58:03 GMT

←Older revision		Revision as of 06:58, 11 October 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5cvz is ~~ON HOLD~~	+	==Investigation of RNA structure in satellite panicum mosaic virus - glutaraldehyde treated==
		+	<StructureSection load='5cvz' size='340' side='right' caption='[[5cvz]], [[Resolution\|resolution]] 3.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5cvz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Panicum_mosaic_satellite_virus Panicum mosaic satellite virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CVZ FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1stm\|1stm]], [[5cw0\|5cw0]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cvz OCA], [http://pdbe.org/5cvz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cvz RCSB], [http://www.ebi.ac.uk/pdbsum/5cvz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cvz ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Three new crystal forms of satellite panicum mosaic virus (SPMV) were grown and their structures solved from X-ray diffraction data using molecular replacement techniques. The crystals were grown under conditions of pH and ionic strength that were appreciably different then those used for the original structure determination. In rhombohedral crystals grown at pH 8.5 and low ionic strength PEG 3350 solutions, Fourier syntheses revealed segments, ten amino acid residues long, of amino-terminal polypeptides not previously seen, as well as masses of electron density within concavities on the interior of the capsid, which appeared in the neighborhoods of icosahedral five- and threefold axes. The densities were compatible with secondary structural domains of RNA, and they included a segment of double helical RNA of about four to five base pairs oriented, at least approximately, along the fivefold axes. The distribution of RNA observed for SPMV appears to be distinctly different than the encapsidated nucleic acid conformation previously suggested for another satellite virus, satellite tobacco mosaic virus. This study further shows that analysis of viruses in crystals grown under different chemical conditions may reveal additional information regarding the structure of encapsidated RNA.

-	~~Authors:~~ Makino~~, D.L.~~, Day, J., Larson~~, S.B.~~, McPherson, A.	+	Investigation of RNA structure in satellite panicum mosaic virus.,Makino DL, Day J, Larson SB, McPherson A Virology. 2006 Aug 1;351(2):420-31. Epub 2006 May 4. PMID:16677679<ref>PMID:16677679</ref>

-	~~Description: Investigation~~ of ~~RNA structure in satellite panicum mosaic virus~~ -~~glutaraldehyde treated~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5cvz" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Panicum mosaic satellite virus]]
	[[Category: Day, J]]		[[Category: Day, J]]
-	[[Category: Larson, S.B]]	+	[[Category: Larson, S B]]
-	[[Category: Makino, D.L]]	+	[[Category: Makino, D L]]
-	[[Category: ~~Mcpherson~~, A]]	+	[[Category: McPherson, A]]
		+	[[Category: Capsid protein]]
		+	[[Category: Glutaraldehyde cross-linked]]
		+	[[Category: Satellite virus]]
		+	[[Category: Virus]]

OCA: Protected "5cvz" [edit=sysop:move=sysop]

OCA — Wed, 05 Aug 2015 19:02:22 GMT

Protected "5cvz" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:02, 5 August 2015

OCA: New page: '''Unreleased structure''' The entry 5cvz is ON HOLD Authors: Makino, D.L., Day, J., Larson, S.B., McPherson, A. Description: Investigation of RNA structure in satellite panicum mosaic...

OCA — Wed, 05 Aug 2015 19:02:20 GMT

New page: '''Unreleased structure''' The entry 5cvz is ON HOLD Authors: Makino, D.L., Day, J., Larson, S.B., McPherson, A. Description: Investigation of RNA structure in satellite panicum mosaic...

New page

'''Unreleased structure'''

The entry 5cvz is ON HOLD

Authors: Makino, D.L., Day, J., Larson, S.B., McPherson, A.

Description: Investigation of RNA structure in satellite panicum mosaic virus -glutaraldehyde treated
[[Category: Unreleased Structures]]
[[Category: Day, J]]
[[Category: Larson, S.B]]
[[Category: Makino, D.L]]
[[Category: Mcpherson, A]]