5dbn - Revision history

OCA at 08:45, 27 September 2023

OCA — Wed, 27 Sep 2023 08:45:09 GMT

←Older revision		Revision as of 08:45, 27 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5dbn]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_DH5alpha Escherichia coli DH5alpha]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DBN FirstGlance]. <br>		<table><tr><td colspan='2'>[[5dbn]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_DH5alpha Escherichia coli DH5alpha]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DBN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.549Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbn OCA], [https://pdbe.org/5dbn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dbn RCSB], [https://www.ebi.ac.uk/pdbsum/5dbn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbn OCA], [https://pdbe.org/5dbn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dbn RCSB], [https://www.ebi.ac.uk/pdbsum/5dbn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbn ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:29, 21 June 2023

OCA — Wed, 21 Jun 2023 10:29:28 GMT

←Older revision		Revision as of 10:29, 21 June 2023
Line 3:		Line 3:
	<StructureSection load='5dbn' size='340' side='right'caption='[[5dbn]], [[Resolution\|resolution]] 2.55Å' scene=''>		<StructureSection load='5dbn' size='340' side='right'caption='[[5dbn]], [[Resolution\|resolution]] 2.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5dbn]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Escherichia_coli_dh5[alpha]~~ Escherichia coli ~~dh5[alpha]~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5DBN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5dbn]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_DH5alpha Escherichia coli DH5alpha]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DBN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atoD, b2221, JW2215 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=668369 Escherichia coli DH5[alpha]]), atoA, b2222, JW2216 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=668369 Escherichia coli DH5[alpha]])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbn OCA], [https://pdbe.org/5dbn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dbn RCSB], [https://www.ebi.ac.uk/pdbsum/5dbn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbn ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetate_CoA-transferase Acetate CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.8 2.8.3.8] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5dbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbn OCA], [~~http~~://pdbe.org/5dbn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5dbn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5dbn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbn ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/ATOD_ECOLI ATOD_ECOLI]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Acetate CoA-transferase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Arbing~~, M A~~]]	+	[[Category: Arbing MA]]
-	[[Category: Eisenberg, D]]	+	[[Category: Eisenberg D]]
-	[[Category: Koo~~, C W~~]]	+	[[Category: Koo CW]]
-	[[Category: Medrano-Soto, A]]	+	[[Category: Medrano-Soto A]]
-	[[Category: Shin, A]]	+	[[Category: Shin A]]
-	~~[[Category: Acetoacetyl-coa transferase]]~~	+
-	~~[[Category: Protein binding]]~~	+
-	~~[[Category: Protein complex]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:31, 27 November 2019

OCA — Wed, 27 Nov 2019 07:31:05 GMT

←Older revision		Revision as of 07:31, 27 November 2019
Line 1:		Line 1:

	==Crystal structure of AtoDA complex==		==Crystal structure of AtoDA complex==
-	<StructureSection load='5dbn' size='340' side='right' caption='[[5dbn]], [[Resolution\|resolution]] 2.55Å' scene=''>	+	<StructureSection load='5dbn' size='340' side='right'caption='[[5dbn]], [[Resolution\|resolution]] 2.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5dbn]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DBN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5dbn]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_dh5[alpha] Escherichia coli dh5[alpha]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DBN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atoD, b2221, JW2215 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=668369 Escherichia coli DH5[alpha]]), atoA, b2222, JW2216 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=668369 Escherichia coli DH5[alpha]])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetate_CoA-transferase Acetate CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.8 2.8.3.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetate_CoA-transferase Acetate CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.8 2.8.3.8] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbn OCA], [http://pdbe.org/5dbn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dbn RCSB], [http://www.ebi.ac.uk/pdbsum/5dbn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbn OCA], [http://pdbe.org/5dbn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dbn RCSB], [http://www.ebi.ac.uk/pdbsum/5dbn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbn ProSAT]</span></td></tr>
Line 11:		Line 12:
	</StructureSection>		</StructureSection>
	[[Category: Acetate CoA-transferase]]		[[Category: Acetate CoA-transferase]]
		+	[[Category: Large Structures]]
	[[Category: Arbing, M A]]		[[Category: Arbing, M A]]
	[[Category: Eisenberg, D]]		[[Category: Eisenberg, D]]

OCA at 06:49, 10 September 2016

OCA — Sat, 10 Sep 2016 06:49:42 GMT

←Older revision		Revision as of 06:49, 10 September 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5dbn is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of AtoDA complex==
-		+	<StructureSection load='5dbn' size='340' side='right' caption='[[5dbn]], [[Resolution\|resolution]] 2.55Å' scene=''>
-	~~Authors~~: ~~Arbing~~, M.A., ~~Koo, C~~.W., ~~Shin~~, A., ~~Medrano-Soto~~, A., Eisenberg, D.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5dbn]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DBN FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure of AtoDA complex~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetate_CoA-transferase Acetate CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.8 2.8.3.8] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbn OCA], [http://pdbe.org/5dbn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dbn RCSB], [http://www.ebi.ac.uk/pdbsum/5dbn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbn ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Acetate CoA-transferase]]
		+	[[Category: Arbing, M A]]
		+	[[Category: Eisenberg, D]]
		+	[[Category: Koo, C W]]
		+	[[Category: Medrano-Soto, A]]
	[[Category: Shin, A]]		[[Category: Shin, A]]
-	[[Category: ~~Koo, C.W~~]]	+	[[Category: Acetoacetyl-coa transferase]]
-	[[Category: ~~Medrano-Soto, A~~]]	+	[[Category: Protein binding]]
-	[[Category: ~~Eisenberg, D~~]]	+	[[Category: Protein complex]]
-	[[Category: ~~Arbing, M.A~~]]	+	[[Category: Transferase]]

OCA at 13:20, 26 February 2016

OCA — Fri, 26 Feb 2016 13:20:36 GMT

←Older revision		Revision as of 13:20, 26 February 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5dbn is ON HOLD	+	The entry 5dbn is ON HOLD until Paper Publication

	Authors: Arbing, M.A., Koo, C.W., Shin, A., Medrano-Soto, A., Eisenberg, D.		Authors: Arbing, M.A., Koo, C.W., Shin, A., Medrano-Soto, A., Eisenberg, D.

OCA: Protected "5dbn" [edit=sysop:move=sysop]

OCA — Wed, 02 Sep 2015 11:24:42 GMT

Protected "5dbn" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:24, 2 September 2015

OCA: New page: '''Unreleased structure''' The entry 5dbn is ON HOLD Authors: Arbing, M.A., Koo, C.W., Shin, A., Medrano-Soto, A., Eisenberg, D. Description: Crystal structure of AtoDA complex [[Categ...

OCA — Wed, 02 Sep 2015 11:24:40 GMT

New page: '''Unreleased structure''' The entry 5dbn is ON HOLD Authors: Arbing, M.A., Koo, C.W., Shin, A., Medrano-Soto, A., Eisenberg, D. Description: Crystal structure of AtoDA complex [[Categ...

New page

'''Unreleased structure'''

The entry 5dbn is ON HOLD

Authors: Arbing, M.A., Koo, C.W., Shin, A., Medrano-Soto, A., Eisenberg, D.

Description: Crystal structure of AtoDA complex
[[Category: Unreleased Structures]]
[[Category: Shin, A]]
[[Category: Koo, C.W]]
[[Category: Medrano-Soto, A]]
[[Category: Eisenberg, D]]
[[Category: Arbing, M.A]]