5dbr - Revision history

OCA at 08:45, 27 September 2023

OCA — Wed, 27 Sep 2023 08:45:14 GMT

←Older revision		Revision as of 08:45, 27 September 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5dbr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DBR FirstGlance]. <br>		<table><tr><td colspan='2'>[[5dbr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DBR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.25Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbr OCA], [https://pdbe.org/5dbr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dbr RCSB], [https://www.ebi.ac.uk/pdbsum/5dbr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbr OCA], [https://pdbe.org/5dbr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dbr RCSB], [https://www.ebi.ac.uk/pdbsum/5dbr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbr ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:29, 21 June 2023

OCA — Wed, 21 Jun 2023 10:29:32 GMT

←Older revision		Revision as of 10:29, 21 June 2023
Line 3:		Line 3:
	<StructureSection load='5dbr' size='340' side='right'caption='[[5dbr]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='5dbr' size='340' side='right'caption='[[5dbr]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5dbr]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5DBR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5dbr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DBR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CALML2, CAM3, CAMC, CAMIII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), SCN5A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbr OCA], [https://pdbe.org/5dbr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dbr RCSB], [https://www.ebi.ac.uk/pdbsum/5dbr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbr ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5dbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbr OCA], [~~http~~://pdbe.org/5dbr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5dbr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5dbr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbr ProSAT]</span></td></tr>	+
	</table>		</table>
	== Disease ==		== Disease ==
-	[~~[http~~://www.uniprot.org/uniprot/~~SCN5A_HUMAN SCN5A_HUMAN~~]~~] Defects in SCN5A are a cause of progressive familial heart block type 1A (PFHB1A) [MIM:[http://omim.org/entry/113900 113900]]; also known as Lenegre-Lev~~ disease ~~or progressive cardiac conduction defect (PCCD). PFHB1A~~ is ~~an autosomal dominant cardiac bundle branch disorder that may progress to complete heart block. PFHB1A is characterized~~ by ~~progressive alteration of cardiac conduction through~~ the His-Purkinje system with right or left bundle branch block and widening of QRS complexes, leading to complete atrioventricular block and causing syncope and sudden death.<ref>PMID:10471492</ref> <ref>PMID:11234013</ref> <ref>PMID:11804990</ref> <ref>PMID:12574143</ref> <ref>PMID:12569159</ref> <ref>PMID:19251209</ref> Defects in ~~SCN5A are the cause of long QT syndrome type 3 (LQT3) [MIM:[http://omim.org/~~entry~~/603830 603830]]~~. Long QT syndromes are heart disorders characterized by a prolonged QT interval on the ECG and polymorphic ventricular arrhythmias. They cause syncope and sudden death in response to exercise or emotional stress. LQT3 inheritance is an autosomal dominant.<ref>PMID:10471492</ref> <ref>PMID:12454206</ref> <ref>PMID:7889574</ref> <ref>PMID:8541846</ref> <ref>PMID:7651517</ref> <ref>PMID:9686753</ref> <ref>PMID:9506831</ref> <ref>PMID:10627139</ref> [:]<ref>PMID:10508990</ref> <ref>PMID:10377081</ref> <ref>PMID:10590249</ref> <ref>PMID:10973849</ref> <ref>PMID:10911008</ref> <ref>PMID:11304498</ref> <ref>PMID:11410597</ref> <ref>PMID:11710892</ref> <ref>PMID:11889015</ref> <ref>PMID:11997281</ref> <ref>PMID:12209021</ref> <ref>PMID:12673799</ref> <ref>PMID:15840476</ref> <ref>PMID:16922724</ref> <ref>PMID:18708744</ref> <ref>PMID:18060054</ref> <ref>PMID:18929331</ref> <ref>PMID:18848812</ref> <ref>PMID:18451998</ref> <ref>PMID:21109022</ref> Defects in ~~SCN5A~~ are the cause of Brugada syndrome type 1 (BRGDA1) [MIM:[http://omim.org/entry/601144 601144]]. An autosomal dominant tachyarrhythmia characterized by right bundle branch block and ST segment elevation on an electrocardiogram (ECG). It can cause the ventricles to beat so fast that the blood is prevented from circulating efficiently in the body. When this situation occurs (called ventricular fibrillation), the individual will faint and may die in a few minutes if the heart is not reset.<ref>PMID:10471492</ref> <ref>PMID:19251209</ref> <ref>PMID:11410597</ref> <ref>PMID:9521325</ref> <ref>PMID:10690282</ref> <ref>PMID:10532948</ref> <ref>PMID:10618304</ref> <ref>PMID:12106943</ref> <ref>PMID:11901046</ref> <ref>PMID:11823453</ref> <ref>PMID:12051963</ref> <ref>PMID:15023552</ref> <ref>PMID:15338453</ref> <ref>PMID:15579534</ref> <ref>PMID:16266370</ref> <ref>PMID:15851320</ref> <ref>PMID:16325048</ref> <ref>PMID:16616735</ref> <ref>PMID:17075016</ref> <ref>PMID:17081365</ref> <ref>PMID:17198989</ref> <ref>PMID:18341814</ref> <ref>PMID:18616619</ref> <ref>PMID:18456723</ref> <ref>PMID:18252757</ref> <ref>PMID:19272188</ref> Defects in SCN5A are the cause of sick sinus syndrome type 1 (SSS1) [MIM:[http://omim.org/entry/608567 608567]]. The term 'sick sinus syndrome' encompasses a variety of conditions caused by sinus node dysfunction. The most common clinical manifestations are syncope, presyncope, dizziness, and fatigue. Electrocardiogram typically shows sinus bradycardia, sinus arrest, and/or sinoatrial block. Episodes of atrial tachycardias coexisting with sinus bradycardia ('tachycardia-bradycardia syndrome') are also common in this disorder. SSS occurs most often in the elderly associated with underlying heart disease ~~or previous cardiac surgery, but can also occur in the fetus, infant, or child without heart disease or other contributing factors, in which case it~~ is considered to be a congenital disorder.<ref>PMID:10471492</ref> <ref>PMID:11748104</ref> <ref>PMID:14523039</ref> <ref>PMID:22795782</ref> Defects in SCN5A are the cause of familial paroxysmal ventricular fibrillation type 1 (VF1) [MIM:[http://omim.org/entry/603829 603829]]. A cardiac arrhythmia marked by fibrillary contractions of the ventricular muscle due to rapid repetitive excitation of myocardial fibers without coordinated contraction of the ventricle and by absence of atrial activity.<ref>PMID:10471492</ref> <ref>PMID:10940383</ref> Defects in SCN5A may be a cause of sudden infant death syndrome (SIDS) [MIM:[http://omim.org/entry/272120 272120]]. SIDS is the sudden death of an infant younger than 1 year that remains unexplained after a thorough case investigation, including performance of a complete autopsy, examination of the death scene, and review of clinical history. Pathophysiologic mechanisms for SIDS may include respiratory dysfunction, cardiac dysrhythmias, cardiorespiratory instability, and inborn errors of metabolism, but definitive pathogenic mechanisms precipitating an infant sudden death remain elusive. Long QT syndromes-associated mutations can be responsible for some of SIDS cases.<ref>PMID:10471492</ref> <ref>PMID:18596570</ref> <ref>PMID:19302788</ref> Defects in SCN5A may be a cause of familial atrial standstill (FAS) [MIM:[http://omim.org/entry/108770 108770]]. Atrial standstill is an extremely rare arrhythmia, characterized by the ~~absence of electrical and mechanical activity~~ in the atria. Electrocardiographically, it is characterized by bradycardia, the absence of P waves, and a junctional narrow complex escape rhythm.<ref>PMID:10471492</ref> <ref>PMID:12522116</ref> Defects in SCN5A are the cause of cardiomyopathy dilated type 1E (CMD1E) [MIM:[http://omim.org/entry~~/601154 601154]]; also known as dilated cardiomyopathy with conduction disorder and arrhythmia or dilated cardiomyopathy with conduction defect 2~~. ~~Dilated cardiomyopathy is a disorder characterized by ventricular dilation and impaired systolic function, resulting~~ in ~~congestive heart failure and arrhythmia. Patients are at risk of premature death.<ref>PMID:10471492</ref> <ref>PMID:15466643</ref> Defects in SCN5A~~ are the cause of ~~familial atrial fibrillation type 10 (ATFB10) [MIM:[http://omim~~.org/entry/614022 614022]]. ATFB10 is a familial form of atrial fibrillation, a common sustained cardiac rhythm disturbance. Atrial fibrillation is characterized by disorganized atrial electrical activity and ineffective atrial contraction promoting blood stasis in the atria and reduces ventricular filling. It can result in palpitations, syncope, thromboembolic stroke, and congestive heart failure.<ref>PMID:10471492</ref> <ref>PMID:18378609</ref> <ref>PMID:18088563</ref>	+	[https://www.uniprot.org/uniprot/CALM1_HUMAN CALM1_HUMAN] The disease is caused by mutations affecting the gene represented in this entry. Mutations in CALM1 are the cause of CPVT4. The disease is caused by mutations affecting the gene represented in this entry. Mutations in CALM1 are the cause of LQT14.
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~SCN5A_HUMAN SCN5A_HUMAN~~]~~] This protein~~ mediates the ~~voltage-dependent sodium ion permeability~~ of ~~excitable membranes~~. ~~Assuming opened or closed conformations in response~~ to the ~~voltage difference across the membrane, the~~ protein ~~forms~~ a ~~sodium-selective channel~~ through ~~which Na~~(+) ~~ions may pass in accordance with their electrochemical gradient~~. ~~It is a tetrodotoxin~~-~~resistant Na~~(+) ~~channel isoform~~. ~~This~~ channel ~~is responsible for the initial upstroke~~ of ~~the action potential. Channel inactivation is regulated by intracellular calcium levels~~.<ref>PMID:~~19074138~~</ref>	+	[https://www.uniprot.org/uniprot/CALM1_HUMAN CALM1_HUMAN] Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins through calcium-binding. Among the enzymes to be stimulated by the calmodulin-calcium complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis (PubMed:16760425). Mediates calcium-dependent inactivation of CACNA1C (PubMed:26969752). Positively regulates calcium-activated potassium channel activity of KCNN2 (PubMed:27165696).<ref>PMID:16760425</ref> <ref>PMID:23893133</ref> <ref>PMID:26969752</ref> <ref>PMID:27165696</ref>

	==See Also==		==See Also==
Line 20:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chazin~~, W J~~]]	+	[[Category: Chazin WJ]]
-	[[Category: Johnson~~, C N~~]]	+	[[Category: Johnson CN]]
-	[[Category: Thompson~~, M K]]~~	+	[[Category: Thompson MK]]
-	~~[[Category: Calmodulin]]~~	+
-	~~[[Category: Inactivation gate]]~~	+
-	~~[[Category: Metal binding protein-transport protein complex]]~~	+
-	~~[[Category: Nav1 5~~]]	+

OCA at 08:56, 4 December 2019

OCA — Wed, 04 Dec 2019 08:56:51 GMT

←Older revision		Revision as of 08:56, 4 December 2019
Line 1:		Line 1:

	==Ca2+ CaM with human cardiac Na+ channel (NaV1.5) inactivation gate==		==Ca2+ CaM with human cardiac Na+ channel (NaV1.5) inactivation gate==
-	<StructureSection load='5dbr' size='340' side='right' caption='[[5dbr]], [[Resolution\|resolution]] 2.25Å' scene=''>	+	<StructureSection load='5dbr' size='340' side='right'caption='[[5dbr]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5dbr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DBR FirstGlance]. <br>		<table><tr><td colspan='2'>[[5dbr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DBR FirstGlance]. <br>
Line 12:		Line 12:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/SCN5A_HUMAN SCN5A_HUMAN]] This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-resistant Na(+) channel isoform. This channel is responsible for the initial upstroke of the action potential. Channel inactivation is regulated by intracellular calcium levels.<ref>PMID:19074138</ref>		[[http://www.uniprot.org/uniprot/SCN5A_HUMAN SCN5A_HUMAN]] This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-resistant Na(+) channel isoform. This channel is responsible for the initial upstroke of the action potential. Channel inactivation is regulated by intracellular calcium levels.<ref>PMID:19074138</ref>
		+
		+	==See Also==
		+	*[[Calmodulin 3D structures\|Calmodulin 3D structures]]
		+	*[[Ion channels 3D structures\|Ion channels 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 17:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Human]]		[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Chazin, W J]]		[[Category: Chazin, W J]]
	[[Category: Johnson, C N]]		[[Category: Johnson, C N]]

OCA at 12:31, 6 November 2017

OCA — Mon, 06 Nov 2017 12:31:30 GMT

←Older revision		Revision as of 12:31, 6 November 2017
Line 3:		Line 3:
	<StructureSection load='5dbr' size='340' side='right' caption='[[5dbr]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='5dbr' size='340' side='right' caption='[[5dbr]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5dbr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DBR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5dbr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DBR FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CALML2, CAM3, CAMC, CAMIII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), SCN5A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbr OCA], [http://pdbe.org/5dbr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dbr RCSB], [http://www.ebi.ac.uk/pdbsum/5dbr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbr OCA], [http://pdbe.org/5dbr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dbr RCSB], [http://www.ebi.ac.uk/pdbsum/5dbr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbr ProSAT]</span></td></tr>
	</table>		</table>
Line 15:		Line 16:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
	[[Category: Chazin, W J]]		[[Category: Chazin, W J]]
	[[Category: Johnson, C N]]		[[Category: Johnson, C N]]

OCA at 01:29, 11 March 2017

OCA — Sat, 11 Mar 2017 01:29:32 GMT

←Older revision		Revision as of 01:29, 11 March 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5dbr is ~~ON HOLD until Feb 22 2018~~	+	==Ca2+ CaM with human cardiac Na+ channel (NaV1.5) inactivation gate==
-		+	<StructureSection load='5dbr' size='340' side='right' caption='[[5dbr]], [[Resolution\|resolution]] 2.25Å' scene=''>
-	~~Authors~~: ~~Johnson~~, C.N., ~~Thompson~~, M.K., ~~Chazin~~, W.J.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5dbr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DBR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DBR FirstGlance]. <br>
-	~~Description~~: ~~Ca2+ CaM~~ with ~~human~~ cardiac ~~Na+ channel~~ (~~NaV1~~.5) ~~inactivation gate~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dbr OCA], [http://pdbe.org/5dbr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dbr RCSB], [http://www.ebi.ac.uk/pdbsum/5dbr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dbr ProSAT]</span></td></tr>
-	[[Category: Chazin, W.J]]	+	</table>
-	[[Category: Thompson, M.K]]	+	== Disease ==
-	[[Category: ~~Johnson, C.N~~]]	+	[[http://www.uniprot.org/uniprot/SCN5A_HUMAN SCN5A_HUMAN]] Defects in SCN5A are a cause of progressive familial heart block type 1A (PFHB1A) [MIM:[http://omim.org/entry/113900 113900]]; also known as Lenegre-Lev disease or progressive cardiac conduction defect (PCCD). PFHB1A is an autosomal dominant cardiac bundle branch disorder that may progress to complete heart block. PFHB1A is characterized by progressive alteration of cardiac conduction through the His-Purkinje system with right or left bundle branch block and widening of QRS complexes, leading to complete atrioventricular block and causing syncope and sudden death.<ref>PMID:10471492</ref> <ref>PMID:11234013</ref> <ref>PMID:11804990</ref> <ref>PMID:12574143</ref> <ref>PMID:12569159</ref> <ref>PMID:19251209</ref> Defects in SCN5A are the cause of long QT syndrome type 3 (LQT3) [MIM:[http://omim.org/entry/603830 603830]]. Long QT syndromes are heart disorders characterized by a prolonged QT interval on the ECG and polymorphic ventricular arrhythmias. They cause syncope and sudden death in response to exercise or emotional stress. LQT3 inheritance is an autosomal dominant.<ref>PMID:10471492</ref> <ref>PMID:12454206</ref> <ref>PMID:7889574</ref> <ref>PMID:8541846</ref> <ref>PMID:7651517</ref> <ref>PMID:9686753</ref> <ref>PMID:9506831</ref> <ref>PMID:10627139</ref> [:]<ref>PMID:10508990</ref> <ref>PMID:10377081</ref> <ref>PMID:10590249</ref> <ref>PMID:10973849</ref> <ref>PMID:10911008</ref> <ref>PMID:11304498</ref> <ref>PMID:11410597</ref> <ref>PMID:11710892</ref> <ref>PMID:11889015</ref> <ref>PMID:11997281</ref> <ref>PMID:12209021</ref> <ref>PMID:12673799</ref> <ref>PMID:15840476</ref> <ref>PMID:16922724</ref> <ref>PMID:18708744</ref> <ref>PMID:18060054</ref> <ref>PMID:18929331</ref> <ref>PMID:18848812</ref> <ref>PMID:18451998</ref> <ref>PMID:21109022</ref> Defects in SCN5A are the cause of Brugada syndrome type 1 (BRGDA1) [MIM:[http://omim.org/entry/601144 601144]]. An autosomal dominant tachyarrhythmia characterized by right bundle branch block and ST segment elevation on an electrocardiogram (ECG). It can cause the ventricles to beat so fast that the blood is prevented from circulating efficiently in the body. When this situation occurs (called ventricular fibrillation), the individual will faint and may die in a few minutes if the heart is not reset.<ref>PMID:10471492</ref> <ref>PMID:19251209</ref> <ref>PMID:11410597</ref> <ref>PMID:9521325</ref> <ref>PMID:10690282</ref> <ref>PMID:10532948</ref> <ref>PMID:10618304</ref> <ref>PMID:12106943</ref> <ref>PMID:11901046</ref> <ref>PMID:11823453</ref> <ref>PMID:12051963</ref> <ref>PMID:15023552</ref> <ref>PMID:15338453</ref> <ref>PMID:15579534</ref> <ref>PMID:16266370</ref> <ref>PMID:15851320</ref> <ref>PMID:16325048</ref> <ref>PMID:16616735</ref> <ref>PMID:17075016</ref> <ref>PMID:17081365</ref> <ref>PMID:17198989</ref> <ref>PMID:18341814</ref> <ref>PMID:18616619</ref> <ref>PMID:18456723</ref> <ref>PMID:18252757</ref> <ref>PMID:19272188</ref> Defects in SCN5A are the cause of sick sinus syndrome type 1 (SSS1) [MIM:[http://omim.org/entry/608567 608567]]. The term 'sick sinus syndrome' encompasses a variety of conditions caused by sinus node dysfunction. The most common clinical manifestations are syncope, presyncope, dizziness, and fatigue. Electrocardiogram typically shows sinus bradycardia, sinus arrest, and/or sinoatrial block. Episodes of atrial tachycardias coexisting with sinus bradycardia ('tachycardia-bradycardia syndrome') are also common in this disorder. SSS occurs most often in the elderly associated with underlying heart disease or previous cardiac surgery, but can also occur in the fetus, infant, or child without heart disease or other contributing factors, in which case it is considered to be a congenital disorder.<ref>PMID:10471492</ref> <ref>PMID:11748104</ref> <ref>PMID:14523039</ref> <ref>PMID:22795782</ref> Defects in SCN5A are the cause of familial paroxysmal ventricular fibrillation type 1 (VF1) [MIM:[http://omim.org/entry/603829 603829]]. A cardiac arrhythmia marked by fibrillary contractions of the ventricular muscle due to rapid repetitive excitation of myocardial fibers without coordinated contraction of the ventricle and by absence of atrial activity.<ref>PMID:10471492</ref> <ref>PMID:10940383</ref> Defects in SCN5A may be a cause of sudden infant death syndrome (SIDS) [MIM:[http://omim.org/entry/272120 272120]]. SIDS is the sudden death of an infant younger than 1 year that remains unexplained after a thorough case investigation, including performance of a complete autopsy, examination of the death scene, and review of clinical history. Pathophysiologic mechanisms for SIDS may include respiratory dysfunction, cardiac dysrhythmias, cardiorespiratory instability, and inborn errors of metabolism, but definitive pathogenic mechanisms precipitating an infant sudden death remain elusive. Long QT syndromes-associated mutations can be responsible for some of SIDS cases.<ref>PMID:10471492</ref> <ref>PMID:18596570</ref> <ref>PMID:19302788</ref> Defects in SCN5A may be a cause of familial atrial standstill (FAS) [MIM:[http://omim.org/entry/108770 108770]]. Atrial standstill is an extremely rare arrhythmia, characterized by the absence of electrical and mechanical activity in the atria. Electrocardiographically, it is characterized by bradycardia, the absence of P waves, and a junctional narrow complex escape rhythm.<ref>PMID:10471492</ref> <ref>PMID:12522116</ref> Defects in SCN5A are the cause of cardiomyopathy dilated type 1E (CMD1E) [MIM:[http://omim.org/entry/601154 601154]]; also known as dilated cardiomyopathy with conduction disorder and arrhythmia or dilated cardiomyopathy with conduction defect 2. Dilated cardiomyopathy is a disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death.<ref>PMID:10471492</ref> <ref>PMID:15466643</ref> Defects in SCN5A are the cause of familial atrial fibrillation type 10 (ATFB10) [MIM:[http://omim.org/entry/614022 614022]]. ATFB10 is a familial form of atrial fibrillation, a common sustained cardiac rhythm disturbance. Atrial fibrillation is characterized by disorganized atrial electrical activity and ineffective atrial contraction promoting blood stasis in the atria and reduces ventricular filling. It can result in palpitations, syncope, thromboembolic stroke, and congestive heart failure.<ref>PMID:10471492</ref> <ref>PMID:18378609</ref> <ref>PMID:18088563</ref>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SCN5A_HUMAN SCN5A_HUMAN]] This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-resistant Na(+) channel isoform. This channel is responsible for the initial upstroke of the action potential. Channel inactivation is regulated by intracellular calcium levels.<ref>PMID:19074138</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chazin, W J]]
		+	[[Category: Johnson, C N]]
		+	[[Category: Thompson, M K]]
		+	[[Category: Calmodulin]]
		+	[[Category: Inactivation gate]]
		+	[[Category: Metal binding protein-transport protein complex]]
		+	[[Category: Nav1 5]]

OCA at 21:45, 3 August 2016

OCA — Wed, 03 Aug 2016 21:45:25 GMT

←Older revision		Revision as of 21:45, 3 August 2016
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5dbr is ON HOLD until ~~Paper Publication~~	+	The entry 5dbr is ON HOLD until Feb 22 2018

	Authors: Johnson, C.N., Thompson, M.K., Chazin, W.J.		Authors: Johnson, C.N., Thompson, M.K., Chazin, W.J.

OCA at 11:03, 16 December 2015

OCA — Wed, 16 Dec 2015 11:03:16 GMT

←Older revision		Revision as of 11:03, 16 December 2015
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	Description: Ca2+ CaM with human cardiac Na+ channel (NaV1.5) inactivation gate		Description: Ca2+ CaM with human cardiac Na+ channel (NaV1.5) inactivation gate
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Thompson, M.K]]
	[[Category: Chazin, W.J]]		[[Category: Chazin, W.J]]
		+	[[Category: Thompson, M.K]]
	[[Category: Johnson, C.N]]		[[Category: Johnson, C.N]]

OCA: Protected "5dbr" [edit=sysop:move=sysop]

OCA — Wed, 02 Sep 2015 11:25:10 GMT

Protected "5dbr" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:25, 2 September 2015

OCA: New page: '''Unreleased structure''' The entry 5dbr is ON HOLD until Paper Publication Authors: Johnson, C.N., Thompson, M.K., Chazin, W.J. Description: Ca2+ CaM with human cardiac Na+ channel (...

OCA — Wed, 02 Sep 2015 11:25:09 GMT

New page: '''Unreleased structure''' The entry 5dbr is ON HOLD until Paper Publication Authors: Johnson, C.N., Thompson, M.K., Chazin, W.J. Description: Ca2+ CaM with human cardiac Na+ channel (...

New page

'''Unreleased structure'''

The entry 5dbr is ON HOLD until Paper Publication

Authors: Johnson, C.N., Thompson, M.K., Chazin, W.J.

Description: Ca2+ CaM with human cardiac Na+ channel (NaV1.5) inactivation gate
[[Category: Unreleased Structures]]
[[Category: Thompson, M.K]]
[[Category: Chazin, W.J]]
[[Category: Johnson, C.N]]