5dq0 - Revision history

OCA at 21:54, 28 June 2023

OCA — Wed, 28 Jun 2023 21:54:44 GMT

←Older revision		Revision as of 21:54, 28 June 2023
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	<StructureSection load='5dq0' size='340' side='right'caption='[[5dq0]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='5dq0' size='340' side='right'caption='[[5dq0]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5dq0]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DQ0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5DQ0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5dq0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DQ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DQ0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NRP2, VEGF165R2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5dq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dq0 OCA], [~~http~~://pdbe.org/5dq0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5dq0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5dq0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5dq0 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dq0 OCA], [https://pdbe.org/5dq0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dq0 RCSB], [https://www.ebi.ac.uk/pdbsum/5dq0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dq0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NRP2_HUMAN NRP2_HUMAN]] High affinity receptor for semaphorins 3C, 3F, VEGF-165 and VEGF-145 isoforms of VEGF, and the PLGF-2 isoform of PGF.	+	[https://www.uniprot.org/uniprot/NRP2_HUMAN NRP2_HUMAN] High affinity receptor for semaphorins 3C, 3F, VEGF-165 and VEGF-145 isoforms of VEGF, and the PLGF-2 isoform of PGF.

	==See Also==		==See Also==
Line 15:		Line 15:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Djordjevic, S]]	+	[[Category: Djordjevic S]]
-	[[Category: Rana~~, R R~~]]	+	[[Category: Rana RR]]
-	[[Category: Tsai~~, Y I~~]]	+	[[Category: Tsai YI]]
-	[[Category: Zachary, I]]	+	[[Category: Zachary I]]
-	~~[[Category: Neuropilin]]~~	+
-	~~[[Category: Signaling protein]]~~	+
-	~~[[Category: Vegf~~]]	+

OCA at 08:14, 8 April 2020

OCA — Wed, 08 Apr 2020 08:14:13 GMT

←Older revision		Revision as of 08:14, 8 April 2020
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	==Structure of human neuropilin-2 b1 domain with novel and unique zinc binding site==		==Structure of human neuropilin-2 b1 domain with novel and unique zinc binding site==
-	<StructureSection load='5dq0' size='340' side='right' caption='[[5dq0]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='5dq0' size='340' side='right'caption='[[5dq0]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5dq0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DQ0 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5DQ0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5dq0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DQ0 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5DQ0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5dq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dq0 OCA], [http://pdbe.org/5dq0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dq0 RCSB], [http://www.ebi.ac.uk/pdbsum/5dq0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dq0 ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NRP2, VEGF165R2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5dq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dq0 OCA], [http://pdbe.org/5dq0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dq0 RCSB], [http://www.ebi.ac.uk/pdbsum/5dq0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dq0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/NRP2_HUMAN NRP2_HUMAN]] High affinity receptor for semaphorins 3C, 3F, VEGF-165 and VEGF-145 isoforms of VEGF, and the PLGF-2 isoform of PGF.		[[http://www.uniprot.org/uniprot/NRP2_HUMAN NRP2_HUMAN]] High affinity receptor for semaphorins 3C, 3F, VEGF-165 and VEGF-145 isoforms of VEGF, and the PLGF-2 isoform of PGF.
		+
		+	==See Also==
		+	*[[Neuropilin\|Neuropilin]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Djordjevic, S]]		[[Category: Djordjevic, S]]
	[[Category: Rana, R R]]		[[Category: Rana, R R]]

OCA at 17:04, 3 October 2016

OCA — Mon, 03 Oct 2016 17:04:21 GMT

←Older revision		Revision as of 17:04, 3 October 2016
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-	'''Unreleased structure'''

-	~~The entry 5dq0 is ON HOLD until Paper Publication~~	+	==Structure of human neuropilin-2 b1 domain with novel and unique zinc binding site==
-		+	<StructureSection load='5dq0' size='340' side='right' caption='[[5dq0]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~Authors: Tsai, Y.I., Rana, R.R., Zachary, I., Djordjevic, S.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5dq0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DQ0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DQ0 FirstGlance]. <br>
-	~~Description:~~ Structure of human neuropilin-2 b1 domain with novel and unique zinc binding site	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dq0 OCA], [http://pdbe.org/5dq0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dq0 RCSB], [http://www.ebi.ac.uk/pdbsum/5dq0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dq0 ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Rana~~, R.R]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NRP2_HUMAN NRP2_HUMAN]] High affinity receptor for semaphorins 3C, 3F, VEGF-165 and VEGF-145 isoforms of VEGF, and the PLGF-2 isoform of PGF.
		+	__TOC__
		+	</StructureSection>
	[[Category: Djordjevic, S]]		[[Category: Djordjevic, S]]
		+	[[Category: Rana, R R]]
		+	[[Category: Tsai, Y I]]
	[[Category: Zachary, I]]		[[Category: Zachary, I]]
-	[[Category: ~~Tsai, Y.I~~]]	+	[[Category: Neuropilin]]
		+	[[Category: Signaling protein]]
		+	[[Category: Vegf]]

OCA at 11:19, 16 December 2015

OCA — Wed, 16 Dec 2015 11:19:33 GMT

←Older revision		Revision as of 11:19, 16 December 2015
Line 9:		Line 9:
	[[Category: Rana, R.R]]		[[Category: Rana, R.R]]
	[[Category: Djordjevic, S]]		[[Category: Djordjevic, S]]
-	[[Category: Tsai, Y.I]]
	[[Category: Zachary, I]]		[[Category: Zachary, I]]
		+	[[Category: Tsai, Y.I]]

OCA: Protected "5dq0" [edit=sysop:move=sysop]

OCA — Wed, 30 Sep 2015 13:21:18 GMT

Protected "5dq0" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:21, 30 September 2015

OCA: New page: '''Unreleased structure''' The entry 5dq0 is ON HOLD until Paper Publication Authors: Tsai, Y.I., Rana, R.R., Zachary, I., Djordjevic, S. Description: Structure of human neuropilin-2 b...

OCA — Wed, 30 Sep 2015 13:21:17 GMT

New page: '''Unreleased structure''' The entry 5dq0 is ON HOLD until Paper Publication Authors: Tsai, Y.I., Rana, R.R., Zachary, I., Djordjevic, S. Description: Structure of human neuropilin-2 b...

New page

'''Unreleased structure'''

The entry 5dq0 is ON HOLD until Paper Publication

Authors: Tsai, Y.I., Rana, R.R., Zachary, I., Djordjevic, S.

Description: Structure of human neuropilin-2 b1 domain with novel and unique zinc binding site
[[Category: Unreleased Structures]]
[[Category: Rana, R.R]]
[[Category: Djordjevic, S]]
[[Category: Tsai, Y.I]]
[[Category: Zachary, I]]