5dqb - Revision history

OCA at 21:54, 28 June 2023

OCA — Wed, 28 Jun 2023 21:54:56 GMT

←Older revision		Revision as of 21:54, 28 June 2023
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	==Green/cyan WasCFP at pH 8.0==		==Green/cyan WasCFP at pH 8.0==
-	<StructureSection load='5dqb' size='340' side='right' caption='[[5dqb]], [[Resolution\|resolution]] 1.25Å' scene=''>	+	<StructureSection load='5dqb' size='340' side='right'caption='[[5dqb]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5dqb]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Aequorea_coerulescens Aequorea coerulescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DQB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5DQB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5dqb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_coerulescens Aequorea coerulescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DQB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DQB FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=GOL:GLYCEROL'>GOL</scene~~>, ~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.25Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5dqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dqb OCA], [~~http~~://pdbe.org/5dqb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5dqb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5dqb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5dqb ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dqb OCA], [https://pdbe.org/5dqb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dqb RCSB], [https://www.ebi.ac.uk/pdbsum/5dqb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dqb ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.

	==See Also==		==See Also==
-	*[[Green Fluorescent Protein\|Green Fluorescent Protein]]	+	*[[Beta secretase 3D structures\|Beta secretase 3D structures]]
		+	*[[Green Fluorescent Protein 3D structures\|Green Fluorescent Protein 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Aequorea coerulescens]]		[[Category: Aequorea coerulescens]]
-	[[Category: ~~Pletnev, S~~]]	+	[[Category: Large Structures]]
-	[[Category: Pletnev~~, V~~]]	+	[[Category: Pletnev S]]
-	[[Category: ~~Pletneva, N~~]]	+	[[Category: Pletnev V]]
-	[[Category: ~~Cerulean variant]]~~	+	[[Category: Pletneva N]]
-	~~[[Category: Cyan fluorescent protein]]~~	+
-	~~[[Category: Fluorescent protein]]~~	+
-	~~[[Category: Temperature and ph dependence]]~~	+
-	~~[[Category: Trp based chromophore~~]]	+

OCA at 07:08, 21 February 2019

OCA — Thu, 21 Feb 2019 07:08:34 GMT

←Older revision		Revision as of 07:08, 21 February 2019
Line 3:		Line 3:
	<StructureSection load='5dqb' size='340' side='right' caption='[[5dqb]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='5dqb' size='340' side='right' caption='[[5dqb]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5dqb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DQB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DQB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5dqb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aequorea_coerulescens Aequorea coerulescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DQB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DQB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dqb OCA], [http://pdbe.org/5dqb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dqb RCSB], [http://www.ebi.ac.uk/pdbsum/5dqb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dqb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dqb OCA], [http://pdbe.org/5dqb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dqb RCSB], [http://www.ebi.ac.uk/pdbsum/5dqb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dqb ProSAT]</span></td></tr>
	</table>		</table>
		+
		+	==See Also==
		+	*[[Green Fluorescent Protein\|Green Fluorescent Protein]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aequorea coerulescens]]
	[[Category: Pletnev, S]]		[[Category: Pletnev, S]]
	[[Category: Pletnev, V]]		[[Category: Pletnev, V]]

OCA at 15:37, 27 July 2016

OCA — Wed, 27 Jul 2016 15:37:24 GMT

←Older revision		Revision as of 15:37, 27 July 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5dqb is ~~ON HOLD until Paper Publication~~	+	==Green/cyan WasCFP at pH 8.0==
-		+	<StructureSection load='5dqb' size='340' side='right' caption='[[5dqb]], [[Resolution\|resolution]] 1.25Å' scene=''>
-	~~Authors~~: ~~Pletnev~~, V., ~~Pletneva, N~~., ~~Pletnev~~, S.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5dqb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DQB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DQB FirstGlance]. <br>
-	~~Description~~: ~~Green~~/~~cyan WasCFP at pH 8~~.0	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures]~~]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dqb OCA], [http://pdbe.org/5dqb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dqb RCSB], [http://www.ebi.ac.uk/pdbsum/5dqb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dqb ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pletnev, S]]		[[Category: Pletnev, S]]
	[[Category: Pletnev, V]]		[[Category: Pletnev, V]]
	[[Category: Pletneva, N]]		[[Category: Pletneva, N]]
		+	[[Category: Cerulean variant]]
		+	[[Category: Cyan fluorescent protein]]
		+	[[Category: Fluorescent protein]]
		+	[[Category: Temperature and ph dependence]]
		+	[[Category: Trp based chromophore]]

OCA: Protected "5dqb" [edit=sysop:move=sysop]

OCA — Wed, 30 Sep 2015 13:22:00 GMT

Protected "5dqb" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:22, 30 September 2015

OCA: New page: '''Unreleased structure''' The entry 5dqb is ON HOLD until Paper Publication Authors: Pletnev, V., Pletneva, N., Pletnev, S. Description: Green/cyan WasCFP at pH 8.0 [[Category: Unrele...

OCA — Wed, 30 Sep 2015 13:21:59 GMT

New page: '''Unreleased structure''' The entry 5dqb is ON HOLD until Paper Publication Authors: Pletnev, V., Pletneva, N., Pletnev, S. Description: Green/cyan WasCFP at pH 8.0 [[Category: Unrele...

New page

'''Unreleased structure'''

The entry 5dqb is ON HOLD until Paper Publication

Authors: Pletnev, V., Pletneva, N., Pletnev, S.

Description: Green/cyan WasCFP at pH 8.0
[[Category: Unreleased Structures]]
[[Category: Pletnev, S]]
[[Category: Pletnev, V]]
[[Category: Pletneva, N]]