5epu - Revision history

OCA at 08:14, 12 July 2023

OCA — Wed, 12 Jul 2023 08:14:54 GMT

←Older revision		Revision as of 08:14, 12 July 2023
Line 3:		Line 3:
	<StructureSection load='5epu' size='340' side='right'caption='[[5epu]], [[Resolution\|resolution]] 1.06Å' scene=''>		<StructureSection load='5epu' size='340' side='right'caption='[[5epu]], [[Resolution\|resolution]] 1.06Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5epu]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EPU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5EPU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5epu]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EPU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5EPU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CYT:6-AMINOPYRIMIDIN-2(1H)-ONE'>CYT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.06Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">udp, udp_1, udp_2, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013160_01327, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377, ERS013212_00480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 "Bacillo virgola del Koch" Trevisan 1884])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CYT:6-AMINOPYRIMIDIN-2(1H)-ONE'>CYT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Uridine_phosphorylase Uridine phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.3 2.4.2.3] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5epu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5epu OCA], [https://pdbe.org/5epu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5epu RCSB], [https://www.ebi.ac.uk/pdbsum/5epu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5epu ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5epu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5epu OCA], [~~http~~://pdbe.org/5epu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5epu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5epu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5epu ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9K4U1_VIBCL Q9K4U1_VIBCL]

	==See Also==		==See Also==
Line 14:		Line 15:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillo virgola del koch trevisan 1884]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Uridine phosphorylase~~]]	+	[[Category: Vibrio cholerae]]
-	[[Category: Betzel, C]]	+	[[Category: Betzel C]]
-	[[Category: Gabdoulkhakov~~, A G~~]]	+	[[Category: Gabdoulkhakov AG]]
-	[[Category: Lashkov~~, A A~~]]	+	[[Category: Lashkov AA]]
-	[[Category: Mikhailov~~, A M~~]]	+	[[Category: Mikhailov AM]]
-	[[Category: Prokofev~~, I I]]~~	+	[[Category: Prokofev II]]
-	~~[[Category: Rossmann fold]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:09, 22 April 2020

OCA — Wed, 22 Apr 2020 07:09:22 GMT

←Older revision		Revision as of 07:09, 22 April 2020
Line 1:		Line 1:

	==X-ray structure uridine phosphorylase from Vibrio cholerae in complex with cytosine at 1.06A.==		==X-ray structure uridine phosphorylase from Vibrio cholerae in complex with cytosine at 1.06A.==
-	<StructureSection load='5epu' size='340' side='right' caption='[[5epu]], [[Resolution\|resolution]] 1.06Å' scene=''>	+	<StructureSection load='5epu' size='340' side='right'caption='[[5epu]], [[Resolution\|resolution]] 1.06Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5epu]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EPU OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5EPU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5epu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EPU OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5EPU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CYT:6-AMINOPYRIMIDIN-2(1H)-ONE'>CYT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CYT:6-AMINOPYRIMIDIN-2(1H)-ONE'>CYT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">udp, udp_1, udp_2, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013160_01327, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377, ERS013212_00480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 "Bacillo virgola del Koch" Trevisan 1884])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Uridine_phosphorylase Uridine phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.3 2.4.2.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Uridine_phosphorylase Uridine phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.3 2.4.2.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5epu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5epu OCA], [http://pdbe.org/5epu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5epu RCSB], [http://www.ebi.ac.uk/pdbsum/5epu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5epu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5epu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5epu OCA], [http://pdbe.org/5epu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5epu RCSB], [http://www.ebi.ac.uk/pdbsum/5epu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5epu ProSAT]</span></td></tr>
	</table>		</table>
		+
		+	==See Also==
		+	*[[Uridine phosphorylase 3D structures\|Uridine phosphorylase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillo virgola del koch trevisan 1884]]
		+	[[Category: Large Structures]]
	[[Category: Uridine phosphorylase]]		[[Category: Uridine phosphorylase]]
	[[Category: Betzel, C]]		[[Category: Betzel, C]]

OCA at 10:48, 10 December 2016

OCA — Sat, 10 Dec 2016 10:48:34 GMT

←Older revision		Revision as of 10:48, 10 December 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5epu ~~is ON HOLD until Paper Publication~~	+	==X-ray structure uridine phosphorylase from Vibrio cholerae in complex with cytosine at 1.06A.==
-		+	<StructureSection load='5epu' size='340' side='right' caption='[[5epu]], [[Resolution\|resolution]] 1.06Å' scene=''>
-	~~Authors~~: ~~Prokofev, I~~.I.~~, Lashkov, A~~.A.~~, Gabdoulkhakov, A~~.G.~~, Betzel, C~~.~~, Mikhailov, A~~.M.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5epu]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EPU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EPU FirstGlance]. <br>
-	~~Description~~: X-~~ray structure uridine~~ phosphorylase ~~from Vibrio cholerae in complex~~ with ~~cytosine at 1~~.~~06A~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CYT:6-AMINOPYRIMIDIN-2(1H)-ONE'>CYT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Uridine_phosphorylase Uridine phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.3 2.4.2.3] </span></td></tr>
-	[[~~Category~~: ~~Prokofev~~, I.I]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5epu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5epu OCA], [http://pdbe.org/5epu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5epu RCSB], [http://www.ebi.ac.uk/pdbsum/5epu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5epu ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Uridine phosphorylase]]
	[[Category: Betzel, C]]		[[Category: Betzel, C]]
-	[[Category: ~~Mikhailov~~, A.M]]	+	[[Category: Gabdoulkhakov, A G]]
-	[[Category: Lashkov, A.A]]	+	[[Category: Lashkov, A A]]
-	[[Category: ~~Gabdoulkhakov~~, A.G]]	+	[[Category: Mikhailov, A M]]
		+	[[Category: Prokofev, I I]]
		+	[[Category: Rossmann fold]]
		+	[[Category: Transferase]]

OCA at 22:26, 10 May 2016

OCA — Tue, 10 May 2016 22:26:59 GMT

←Older revision		Revision as of 22:26, 10 May 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5epu is ON HOLD	+	The entry 5epu is ON HOLD until Paper Publication

	Authors: Prokofev, I.I., Lashkov, A.A., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M.		Authors: Prokofev, I.I., Lashkov, A.A., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M.

OCA: Protected "5epu" [edit=sysop:move=sysop]

OCA — Tue, 01 Dec 2015 03:12:08 GMT

Protected "5epu" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:12, 1 December 2015

OCA: New page: '''Unreleased structure''' The entry 5epu is ON HOLD Authors: Prokofev, I.I., Lashkov, A.A., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M. Description: X-ray structure uridine phosp...

OCA — Tue, 01 Dec 2015 03:12:07 GMT

New page: '''Unreleased structure''' The entry 5epu is ON HOLD Authors: Prokofev, I.I., Lashkov, A.A., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M. Description: X-ray structure uridine phosp...

New page

'''Unreleased structure'''

The entry 5epu is ON HOLD

Authors: Prokofev, I.I., Lashkov, A.A., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M.

Description: X-ray structure uridine phosphorylase from Vibrio cholerae in complex with cytosine at 1.06A.
[[Category: Unreleased Structures]]
[[Category: Prokofev, I.I]]
[[Category: Betzel, C]]
[[Category: Mikhailov, A.M]]
[[Category: Lashkov, A.A]]
[[Category: Gabdoulkhakov, A.G]]