5eri - Revision history

OCA at 08:18, 12 July 2023

OCA — Wed, 12 Jul 2023 08:18:50 GMT

←Older revision		Revision as of 08:18, 12 July 2023
Line 3:		Line 3:
	<StructureSection load='5eri' size='340' side='right'caption='[[5eri]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='5eri' size='340' side='right'caption='[[5eri]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5eri]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_difficilis"_hall_and_o'toole_1935 "bacillus difficilis" hall and o'toole 1935~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ERI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ERI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5eri]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile Clostridioides difficile]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ERI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ERI FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>yybA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1496~~ "~~Bacillus difficilis~~" ~~Hall and O'Toole 1935~~])</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5eri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eri OCA], [~~http~~://pdbe.org/5eri PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5eri RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5eri PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5eri ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5eri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eri OCA], [https://pdbe.org/5eri PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5eri RCSB], [https://www.ebi.ac.uk/pdbsum/5eri PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5eri ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A031WDA8_CLODI A0A031WDA8_CLODI]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 16:		Line 18:
	</div>		</div>
	<div class="pdbe-citations 5eri" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5eri" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Transcriptional activator 3D structures\|Transcriptional activator 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus difficilis hall and o'toole 1935~~]]	+	[[Category: Clostridioides difficile]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Peng~~, J W~~]]	+	[[Category: Peng JW]]
-	[[Category: Tan~~, X S~~]]	+	[[Category: Tan XS]]
-	[[Category: Yuan, H]]	+	[[Category: Yuan H]]
-	~~[[Category: Dna-binding]]~~	+
-	~~[[Category: Marr]]~~	+
-	~~[[Category: Peptoclostridium difficile]]~~	+
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcription factor~~]]	+

OCA at 08:55, 1 January 2020

OCA — Wed, 01 Jan 2020 08:55:40 GMT

←Older revision		Revision as of 08:55, 1 January 2020
Line 1:		Line 1:

	==MarR Protein from Peptoclostridium difficile DA00132==		==MarR Protein from Peptoclostridium difficile DA00132==
-	<StructureSection load='5eri' size='340' side='right' caption='[[5eri]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='5eri' size='340' side='right'caption='[[5eri]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5eri]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ERI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ERI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5eri]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_difficilis"_hall_and_o'toole_1935 "bacillus difficilis" hall and o'toole 1935]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ERI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ERI FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eri OCA], [http://pdbe.org/5eri PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eri RCSB], [http://www.ebi.ac.uk/pdbsum/5eri PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eri ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yybA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1496 "Bacillus difficilis" Hall and O'Toole 1935])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eri OCA], [http://pdbe.org/5eri PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eri RCSB], [http://www.ebi.ac.uk/pdbsum/5eri PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eri ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Regulators of multiple antibiotic resistance (MarRs) are key players against toxins in prokaryotes. MarR homologues have been identified in many bacterial and archaeal species which pose daunting antibiotic resistance issues that threaten public health. The continuous prevalence of Clostridium difficile infection (CDI) throughout the world is associated with the abuse of antibiotics, and antibiotic treatments of CDI have limited effect. In the genome of C. difficile strain 630, the marR gene (ID 4913953) encodes a MarR protein. Here, MarR from C. difficile (MarRC.difficile) was subcloned and crystallized for the first time. MarRC.difficile was successfully expressed in Escherichia coli in a soluble form and was purified to near-homogeneity (>95%) by a two-step purification protocol. The structure of MarRC.difficile has been solved at 2.3 A resolution. The crystal belonged to the monoclinic space group P43212, with unit-cell parameters a = b = 66.569, c = 83.654 A. The structure reported reveals MarRC.difficile to be a dimer, with each subunit consisting of six alpha-helices and three antiparallel beta-hairpins. MarRC.difficile shows high structural similarity to the MarR proteins from E. coli and Staphylococcus aureus, indicating that MarRC.difficile might be a DNA-binding protein.
		+
		+	Crystal structure of the multiple antibiotic resistance regulator MarR from Clostridium difficile.,Peng JW, Yuan H, Tan XS Acta Crystallogr F Struct Biol Commun. 2017 Jun 1;73(Pt 6):363-368. doi:, 10.1107/S2053230X1700766X. Epub 2017 May 31. PMID:28580925<ref>PMID:28580925</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5eri" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus difficilis hall and o'toole 1935]]
		+	[[Category: Large Structures]]
	[[Category: Peng, J W]]		[[Category: Peng, J W]]
	[[Category: Tan, X S]]		[[Category: Tan, X S]]

OCA at 03:23, 10 December 2016

OCA — Sat, 10 Dec 2016 03:23:05 GMT

←Older revision		Revision as of 03:23, 10 December 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5eri ~~is ON HOLD until Paper Publication~~	+	==MarR Protein from Peptoclostridium difficile DA00132==
-		+	<StructureSection load='5eri' size='340' side='right' caption='[[5eri]], [[Resolution\|resolution]] 2.30Å' scene=''>
-	~~Authors~~: ~~Yuan~~, H., ~~Peng~~, J.W., ~~Tan~~, X.S.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5eri]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ERI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ERI FirstGlance]. <br>
-	~~Description: MarR Protein from Peptoclostridium difficile DA00132~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eri OCA], [http://pdbe.org/5eri PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eri RCSB], [http://www.ebi.ac.uk/pdbsum/5eri PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eri ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: ~~Peng~~, ~~J.W~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Peng, J W]]
		+	[[Category: Tan, X S]]
	[[Category: Yuan, H]]		[[Category: Yuan, H]]
-	[[Category: ~~Tan, X.S~~]]	+	[[Category: Dna-binding]]
		+	[[Category: Marr]]
		+	[[Category: Peptoclostridium difficile]]
		+	[[Category: Transcription]]
		+	[[Category: Transcription factor]]

OCA at 14:56, 2 December 2015

OCA — Wed, 02 Dec 2015 14:56:38 GMT

←Older revision		Revision as of 14:56, 2 December 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5eri is ON HOLD	+	The entry 5eri is ON HOLD until Paper Publication

	Authors: Yuan, H., Peng, J.W., Tan, X.S.		Authors: Yuan, H., Peng, J.W., Tan, X.S.

OCA: Protected "5eri" [edit=sysop:move=sysop]

OCA — Tue, 01 Dec 2015 03:16:35 GMT

Protected "5eri" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:16, 1 December 2015

OCA: New page: '''Unreleased structure''' The entry 5eri is ON HOLD Authors: Yuan, H., Peng, J.W., Tan, X.S. Description: MarR Protein from Peptoclostridium difficile DA00132 [[Category: Unreleased S...

OCA — Tue, 01 Dec 2015 03:16:34 GMT

New page: '''Unreleased structure''' The entry 5eri is ON HOLD Authors: Yuan, H., Peng, J.W., Tan, X.S. Description: MarR Protein from Peptoclostridium difficile DA00132 [[Category: Unreleased S...

New page

'''Unreleased structure'''

The entry 5eri is ON HOLD

Authors: Yuan, H., Peng, J.W., Tan, X.S.

Description: MarR Protein from Peptoclostridium difficile DA00132
[[Category: Unreleased Structures]]
[[Category: Peng, J.W]]
[[Category: Yuan, H]]
[[Category: Tan, X.S]]