5eup - Revision history

OCA at 12:29, 6 March 2024

OCA — Wed, 06 Mar 2024 12:29:57 GMT

←Older revision		Revision as of 12:29, 6 March 2024
Line 9:		Line 9:
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/CP190_DROME CP190_DROME] Component of the gypsy chromatin insulator complex which is required for the function of the gypsy chromatin insulator and other endogenous chromatin insulators. Chromatin insulators are regulatory elements which establish independent domains of transcriptional activity within eukaryotic genomes. Insulators have two defining properties; they can block the communication between an enhancer and a promoter when placed between them and can also buffer transgenes from position effect variegation (PEV). Insulators are proposed to structure the chromatin fiber into independent domains of differing transcriptional potential by promoting the formation of distinct chromatin loops. This chromatin looping may involve the formation of insulator bodies, where homotypic interactions between individual subunits of the insulator complex could promote the clustering of widely spaced insulators at the nuclear periphery. Within the gypsy insulator complex, this protein may directly bind to insulator DNA at sites distinct from those recognized by su(Hw). Required during embryogenesis for axial expansion, an actin/myosin dependent process that distributes the dividing nuclei along the anterior-posterior axis of the syncytial embryo. Does not appear to play a crucial role in organizing centrosomal microtubules during mitosis.<ref>PMID:14996941</ref> <ref>PMID:15574329</ref> <ref>PMID:16051175</ref>		[https://www.uniprot.org/uniprot/CP190_DROME CP190_DROME] Component of the gypsy chromatin insulator complex which is required for the function of the gypsy chromatin insulator and other endogenous chromatin insulators. Chromatin insulators are regulatory elements which establish independent domains of transcriptional activity within eukaryotic genomes. Insulators have two defining properties; they can block the communication between an enhancer and a promoter when placed between them and can also buffer transgenes from position effect variegation (PEV). Insulators are proposed to structure the chromatin fiber into independent domains of differing transcriptional potential by promoting the formation of distinct chromatin loops. This chromatin looping may involve the formation of insulator bodies, where homotypic interactions between individual subunits of the insulator complex could promote the clustering of widely spaced insulators at the nuclear periphery. Within the gypsy insulator complex, this protein may directly bind to insulator DNA at sites distinct from those recognized by su(Hw). Required during embryogenesis for axial expansion, an actin/myosin dependent process that distributes the dividing nuclei along the anterior-posterior axis of the syncytial embryo. Does not appear to play a crucial role in organizing centrosomal microtubules during mitosis.<ref>PMID:14996941</ref> <ref>PMID:15574329</ref> <ref>PMID:16051175</ref>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	CP190 is a large, multi-domain protein, first identified as a centrosome protein with oscillatory localization over the course of the cell cycle. During interphase it has a well-established role within the nucleus as a chromatin insulator. Upon nuclear envelope breakdown, there is a striking redistribution of CP190 to centrosomes and the mitotic spindle, in addition to the population at chromosomes. Here, we investigate CP190 in detail by performing domain analysis in cultured Drosophila S2 cells combined with protein structure determination by X-ray crystallography, in vitro biochemical characterization, and in vivo fixed and live imaging of cp190 mutant flies. Our analysis of CP190 identifies a novel N-terminal centrosome and microtubule (MT) targeting region, sufficient for spindle localization. This region consists of a highly conserved BTB domain and a linker region that serves as the MT binding domain. We present the 2.5 A resolution structure of the CP190 N-terminal 126 amino acids, which adopts a canonical BTB domain fold and exists as a stable dimer in solution. The ability of the linker region to robustly localize to MTs requires BTB domain-mediated dimerization. Deletion of the linker region using CRISPR significantly alters spindle morphology and leads to DNA segregation errors in the developing Drosophila brain neuroblasts. Collectively, we highlight a multivalent MT-binding architecture in CP190, which confers distinct subcellular cytoskeletal localization and function during mitosis.
-
-	Newly Characterized Region of CP190 Associates with Microtubules and Mediates Proper Spindle Morphology in Drosophila Stem Cells.,Plevock KM, Galletta BJ, Slep KC, Rusan NM PLoS One. 2015 Dec 9;10(12):e0144174. doi: 10.1371/journal.pone.0144174., eCollection 2015. PMID:26649574<ref>PMID:26649574</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 5eup" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:26, 12 July 2023

OCA — Wed, 12 Jul 2023 08:26:05 GMT

←Older revision		Revision as of 08:26, 12 July 2023
Line 3:		Line 3:
	<StructureSection load='5eup' size='340' side='right'caption='[[5eup]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='5eup' size='340' side='right'caption='[[5eup]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5eup]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Drome Drome~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EUP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5EUP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5eup]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EUP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5EUP FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~Cp190, E(mod)4~~-1, ~~CG6384 (~~[~~http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=~~5&~~id=7227 DROME])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5eup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eup OCA], [~~http~~://pdbe.org/5eup PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5eup RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5eup PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5eup ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5eup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eup OCA], [https://pdbe.org/5eup PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5eup RCSB], [https://www.ebi.ac.uk/pdbsum/5eup PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5eup ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/CP190_DROME CP190_DROME]] Component of the gypsy chromatin insulator complex which is required for the function of the gypsy chromatin insulator and other endogenous chromatin insulators. Chromatin insulators are regulatory elements which establish independent domains of transcriptional activity within eukaryotic genomes. Insulators have two defining properties; they can block the communication between an enhancer and a promoter when placed between them and can also buffer transgenes from position effect variegation (PEV). Insulators are proposed to structure the chromatin fiber into independent domains of differing transcriptional potential by promoting the formation of distinct chromatin loops. This chromatin looping may involve the formation of insulator bodies, where homotypic interactions between individual subunits of the insulator complex could promote the clustering of widely spaced insulators at the nuclear periphery. Within the gypsy insulator complex, this protein may directly bind to insulator DNA at sites distinct from those recognized by su(Hw). Required during embryogenesis for axial expansion, an actin/myosin dependent process that distributes the dividing nuclei along the anterior-posterior axis of the syncytial embryo. Does not appear to play a crucial role in organizing centrosomal microtubules during mitosis.<ref>PMID:14996941</ref> <ref>PMID:15574329</ref> <ref>PMID:16051175</ref>	+	[https://www.uniprot.org/uniprot/CP190_DROME CP190_DROME] Component of the gypsy chromatin insulator complex which is required for the function of the gypsy chromatin insulator and other endogenous chromatin insulators. Chromatin insulators are regulatory elements which establish independent domains of transcriptional activity within eukaryotic genomes. Insulators have two defining properties; they can block the communication between an enhancer and a promoter when placed between them and can also buffer transgenes from position effect variegation (PEV). Insulators are proposed to structure the chromatin fiber into independent domains of differing transcriptional potential by promoting the formation of distinct chromatin loops. This chromatin looping may involve the formation of insulator bodies, where homotypic interactions between individual subunits of the insulator complex could promote the clustering of widely spaced insulators at the nuclear periphery. Within the gypsy insulator complex, this protein may directly bind to insulator DNA at sites distinct from those recognized by su(Hw). Required during embryogenesis for axial expansion, an actin/myosin dependent process that distributes the dividing nuclei along the anterior-posterior axis of the syncytial embryo. Does not appear to play a crucial role in organizing centrosomal microtubules during mitosis.<ref>PMID:14996941</ref> <ref>PMID:15574329</ref> <ref>PMID:16051175</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Drome~~]]	+	[[Category: Drosophila melanogaster]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Galletta~~, B J~~]]	+	[[Category: Galletta BJ]]
-	[[Category: Plevock~~, K M~~]]	+	[[Category: Plevock KM]]
-	[[Category: Rusan~~, N M~~]]	+	[[Category: Rusan NM]]
-	[[Category: Slep~~, K C]]~~	+	[[Category: Slep KC]]
-	~~[[Category: Btb domain cp190 chromatin insulator centrosome]]~~	+
-	~~[[Category: Structural protein~~]]	+

OCA at 09:02, 4 December 2019

OCA — Wed, 04 Dec 2019 09:02:31 GMT

←Older revision		Revision as of 09:02, 4 December 2019
Line 1:		Line 1:

	==Structure of the Drosophila melanogaster CP190 BTB domain==		==Structure of the Drosophila melanogaster CP190 BTB domain==
-	<StructureSection load='5eup' size='340' side='right' caption='[[5eup]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='5eup' size='340' side='right'caption='[[5eup]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5eup]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EUP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EUP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5eup]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Drome Drome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EUP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EUP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eup OCA], [http://pdbe.org/5eup PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eup RCSB], [http://www.ebi.ac.uk/pdbsum/5eup PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eup ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cp190, E(mod)4-1, CG6384 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 DROME])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eup OCA], [http://pdbe.org/5eup PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eup RCSB], [http://www.ebi.ac.uk/pdbsum/5eup PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eup ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Drome]]
		+	[[Category: Large Structures]]
	[[Category: Galletta, B J]]		[[Category: Galletta, B J]]
	[[Category: Plevock, K M]]		[[Category: Plevock, K M]]

OCA at 07:52, 27 July 2016

OCA — Wed, 27 Jul 2016 07:52:22 GMT

←Older revision		Revision as of 07:52, 27 July 2016
Line 1:		Line 1:
		+
	==Structure of the Drosophila melanogaster CP190 BTB domain==		==Structure of the Drosophila melanogaster CP190 BTB domain==
	<StructureSection load='5eup' size='340' side='right' caption='[[5eup]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='5eup' size='340' side='right' caption='[[5eup]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5eup]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EUP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EUP FirstGlance]. <br>		<table><tr><td colspan='2'>[[5eup]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EUP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EUP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eup OCA], [http://pdbe.org/5eup PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eup RCSB], [http://www.ebi.ac.uk/pdbsum/5eup PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eup OCA], [http://pdbe.org/5eup PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eup RCSB], [http://www.ebi.ac.uk/pdbsum/5eup PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eup ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 12:37, 23 December 2015

OCA — Wed, 23 Dec 2015 12:37:47 GMT

←Older revision		Revision as of 12:37, 23 December 2015
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==Structure of the Drosophila melanogaster CP190 BTB domain==
		+	<StructureSection load='5eup' size='340' side='right' caption='[[5eup]], [[Resolution\|resolution]] 2.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5eup]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EUP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EUP FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eup OCA], [http://pdbe.org/5eup PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eup RCSB], [http://www.ebi.ac.uk/pdbsum/5eup PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CP190_DROME CP190_DROME]] Component of the gypsy chromatin insulator complex which is required for the function of the gypsy chromatin insulator and other endogenous chromatin insulators. Chromatin insulators are regulatory elements which establish independent domains of transcriptional activity within eukaryotic genomes. Insulators have two defining properties; they can block the communication between an enhancer and a promoter when placed between them and can also buffer transgenes from position effect variegation (PEV). Insulators are proposed to structure the chromatin fiber into independent domains of differing transcriptional potential by promoting the formation of distinct chromatin loops. This chromatin looping may involve the formation of insulator bodies, where homotypic interactions between individual subunits of the insulator complex could promote the clustering of widely spaced insulators at the nuclear periphery. Within the gypsy insulator complex, this protein may directly bind to insulator DNA at sites distinct from those recognized by su(Hw). Required during embryogenesis for axial expansion, an actin/myosin dependent process that distributes the dividing nuclei along the anterior-posterior axis of the syncytial embryo. Does not appear to play a crucial role in organizing centrosomal microtubules during mitosis.<ref>PMID:14996941</ref> <ref>PMID:15574329</ref> <ref>PMID:16051175</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	CP190 is a large, multi-domain protein, first identified as a centrosome protein with oscillatory localization over the course of the cell cycle. During interphase it has a well-established role within the nucleus as a chromatin insulator. Upon nuclear envelope breakdown, there is a striking redistribution of CP190 to centrosomes and the mitotic spindle, in addition to the population at chromosomes. Here, we investigate CP190 in detail by performing domain analysis in cultured Drosophila S2 cells combined with protein structure determination by X-ray crystallography, in vitro biochemical characterization, and in vivo fixed and live imaging of cp190 mutant flies. Our analysis of CP190 identifies a novel N-terminal centrosome and microtubule (MT) targeting region, sufficient for spindle localization. This region consists of a highly conserved BTB domain and a linker region that serves as the MT binding domain. We present the 2.5 A resolution structure of the CP190 N-terminal 126 amino acids, which adopts a canonical BTB domain fold and exists as a stable dimer in solution. The ability of the linker region to robustly localize to MTs requires BTB domain-mediated dimerization. Deletion of the linker region using CRISPR significantly alters spindle morphology and leads to DNA segregation errors in the developing Drosophila brain neuroblasts. Collectively, we highlight a multivalent MT-binding architecture in CP190, which confers distinct subcellular cytoskeletal localization and function during mitosis.

-	~~The entry 5eup is ON HOLD~~	+	Newly Characterized Region of CP190 Associates with Microtubules and Mediates Proper Spindle Morphology in Drosophila Stem Cells.,Plevock KM, Galletta BJ, Slep KC, Rusan NM PLoS One. 2015 Dec 9;10(12):e0144174. doi: 10.1371/journal.pone.0144174., eCollection 2015. PMID:26649574<ref>PMID:26649574</ref>

-	~~Authors: Plevock~~, K.M.~~, Galletta, B.J., Slep, K.C., Rusan, N.M~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description~~: ~~Structure of the Drosophila melanogaster CP190 BTB domain~~	+	<div class="pdbe-citations 5eup" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Unreleased Structures~~]]	+	== References ==
-	[[Category: Plevock, K.M]]	+	<references/>
-	[[Category: Slep, K.C]]	+	__TOC__
-	[[Category: ~~Galletta, B.J~~]]	+	</StructureSection>
-	[[Category: ~~Rusan, N.M~~]]	+	[[Category: Galletta, B J]]
		+	[[Category: Plevock, K M]]
		+	[[Category: Rusan, N M]]
		+	[[Category: Slep, K C]]
		+	[[Category: Btb domain cp190 chromatin insulator centrosome]]
		+	[[Category: Structural protein]]

OCA: Protected "5eup" [edit=sysop:move=sysop]

OCA — Tue, 01 Dec 2015 03:24:27 GMT

Protected "5eup" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:24, 1 December 2015

OCA: New page: '''Unreleased structure''' The entry 5eup is ON HOLD Authors: Plevock, K.M., Galletta, B.J., Slep, K.C., Rusan, N.M. Description: Structure of the Drosophila melanogaster CP190 BTB dom...

OCA — Tue, 01 Dec 2015 03:24:26 GMT

New page: '''Unreleased structure''' The entry 5eup is ON HOLD Authors: Plevock, K.M., Galletta, B.J., Slep, K.C., Rusan, N.M. Description: Structure of the Drosophila melanogaster CP190 BTB dom...

New page

'''Unreleased structure'''

The entry 5eup is ON HOLD

Authors: Plevock, K.M., Galletta, B.J., Slep, K.C., Rusan, N.M.

Description: Structure of the Drosophila melanogaster CP190 BTB domain
[[Category: Unreleased Structures]]
[[Category: Plevock, K.M]]
[[Category: Slep, K.C]]
[[Category: Galletta, B.J]]
[[Category: Rusan, N.M]]