5f1e - Revision history

OCA at 08:40, 12 July 2023

OCA — Wed, 12 Jul 2023 08:40:00 GMT

←Older revision		Revision as of 08:40, 12 July 2023
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	<StructureSection load='5f1e' size='340' side='right'caption='[[5f1e]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='5f1e' size='340' side='right'caption='[[5f1e]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5f1e]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Perca_vitrea Perca vitrea~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F1E OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5F1E FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5f1e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sander_vitreus Sander vitreus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F1E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5F1E FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[5ez2\|5ez2]]~~, [[~~5f6z~~\|~~5f6z~~]]</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5f1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1e OCA], [~~http~~://pdbe.org/5f1e PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5f1e RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5f1e PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5f1e ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5f1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1e OCA], [https://pdbe.org/5f1e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5f1e RCSB], [https://www.ebi.ac.uk/pdbsum/5f1e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5f1e ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A1D5B367_SANVI A0A1D5B367_SANVI]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Perca vitrea~~]]	+	[[Category: Sander vitreus]]
-	[[Category: Ghosh, S]]	+	[[Category: Ghosh S]]
-	[[Category: Ramaswamy, S]]	+	[[Category: Ramaswamy S]]
-	~~[[Category: Biliverdin]]~~	+
-	~~[[Category: Fluorescent protein]]~~	+
-	~~[[Category: Lipocalin]]~~	+
-	~~[[Category: Photo-stability]]~~	+
-	~~[[Category: Red-fluorescent protein]]~~	+
-	~~[[Category: Sandercyanin~~]]	+

OCA at 07:54, 29 April 2020

OCA — Wed, 29 Apr 2020 07:54:49 GMT

←Older revision		Revision as of 07:54, 29 April 2020
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	==Apo protein of Sandercyanin==		==Apo protein of Sandercyanin==
-	<StructureSection load='5f1e' size='340' side='right' caption='[[5f1e]], [[Resolution\|resolution]] 2.70Å' scene=''>	+	<StructureSection load='5f1e' size='340' side='right'caption='[[5f1e]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5f1e]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F1E OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5F1E FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5f1e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Perca_vitrea Perca vitrea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F1E OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5F1E FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ez2\|5ez2]], [[5f6z\|5f6z]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ez2\|5ez2]], [[5f6z\|5f6z]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5f1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1e OCA], [http://pdbe.org/5f1e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f1e RCSB], [http://www.ebi.ac.uk/pdbsum/5f1e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5f1e ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5f1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1e OCA], [http://pdbe.org/5f1e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f1e RCSB], [http://www.ebi.ac.uk/pdbsum/5f1e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5f1e ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Perca vitrea]]
	[[Category: Ghosh, S]]		[[Category: Ghosh, S]]
	[[Category: Ramaswamy, S]]		[[Category: Ramaswamy, S]]

OCA at 11:26, 26 October 2016

OCA — Wed, 26 Oct 2016 11:26:10 GMT

←Older revision		Revision as of 11:26, 26 October 2016
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5f1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1e OCA], [http://pdbe.org/5f1e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f1e RCSB], [http://www.ebi.ac.uk/pdbsum/5f1e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5f1e ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5f1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1e OCA], [http://pdbe.org/5f1e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f1e RCSB], [http://www.ebi.ac.uk/pdbsum/5f1e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5f1e ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The walleye (Sander vitreus) is a golden yellow fish that inhabits the Northern American lakes. The recent sightings of the blue walleye and the correlation of its sighting to possible increased UV radiation have been proposed earlier. The underlying molecular basis of its adaptation to increased UV radiation is the presence of a protein (Sandercyanin)-ligand complex in the mucus of walleyes. Degradation of heme by UV radiation results in the formation of Biliverdin IXalpha (BLA), the chromophore bound to Sandercyanin. We show that Sandercyanin is a monomeric protein that forms stable homotetramers on addition of BLA to the protein. A structure of the Sandercyanin-BLA complex, purified from the fish mucus, reveals a glycosylated protein with a lipocalin fold. This protein-ligand complex absorbs light in the UV region (lambdamax of 375 nm) and upon excitation at this wavelength emits in the red region (lambdamax of 675 nm). Unlike all other known biliverdin-bound fluorescent proteins, the chromophore is noncovalently bound to the protein. We provide here a molecular rationale for the observed spectral properties of Sandercyanin.
		+
		+	Blue protein with red fluorescence.,Ghosh S, Yu CL, Ferraro DJ, Sudha S, Pal SK, Schaefer WF, Gibson DT, Ramaswamy S Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11513-11518. Epub 2016 Sep 29. PMID:27688756<ref>PMID:27688756</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5f1e" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 17:06, 3 October 2016

OCA — Mon, 03 Oct 2016 17:06:59 GMT

←Older revision		Revision as of 17:06, 3 October 2016
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-	'''Unreleased structure'''

-	~~The entry~~ 5f1e is ~~ON HOLD until Paper Publication~~	+	==Apo protein of Sandercyanin==
-		+	<StructureSection load='5f1e' size='340' side='right' caption='[[5f1e]], [[Resolution\|resolution]] 2.70Å' scene=''>
-	~~Authors~~: ~~Ghosh~~, S., ~~Ramaswamy~~, S.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5f1e]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F1E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5F1E FirstGlance]. <br>
-	~~Description: Apo protein of Sandercyanin~~	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ez2\|5ez2]], [[5f6z\|5f6z]]</td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5f1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1e OCA], [http://pdbe.org/5f1e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f1e RCSB], [http://www.ebi.ac.uk/pdbsum/5f1e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5f1e ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Ghosh, S]]
	[[Category: Ramaswamy, S]]		[[Category: Ramaswamy, S]]
-	[[Category: ~~Ghosh, S~~]]	+	[[Category: Biliverdin]]
		+	[[Category: Fluorescent protein]]
		+	[[Category: Lipocalin]]
		+	[[Category: Photo-stability]]
		+	[[Category: Red-fluorescent protein]]
		+	[[Category: Sandercyanin]]

OCA at 12:26, 16 December 2015

OCA — Wed, 16 Dec 2015 12:26:58 GMT

←Older revision		Revision as of 12:26, 16 December 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5f1e is ON HOLD	+	The entry 5f1e is ON HOLD until Paper Publication

	Authors: Ghosh, S., Ramaswamy, S.		Authors: Ghosh, S., Ramaswamy, S.

OCA: Protected "5f1e" [edit=sysop:move=sysop]

OCA — Wed, 09 Dec 2015 12:28:44 GMT

Protected "5f1e" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:28, 9 December 2015

OCA: New page: '''Unreleased structure''' The entry 5f1e is ON HOLD Authors: Ghosh, S., Ramaswamy, S. Description: Apo protein of Sandercyanin Category: Unreleased Structures [[Category: Ramaswam...

OCA — Wed, 09 Dec 2015 12:28:43 GMT

New page: '''Unreleased structure''' The entry 5f1e is ON HOLD Authors: Ghosh, S., Ramaswamy, S. Description: Apo protein of Sandercyanin Category: Unreleased Structures [[Category: Ramaswam...

New page

'''Unreleased structure'''

The entry 5f1e is ON HOLD

Authors: Ghosh, S., Ramaswamy, S.

Description: Apo protein of Sandercyanin
[[Category: Unreleased Structures]]
[[Category: Ramaswamy, S]]
[[Category: Ghosh, S]]