5f1h - Revision history

OCA at 08:40, 12 July 2023

OCA — Wed, 12 Jul 2023 08:40:12 GMT

←Older revision		Revision as of 08:40, 12 July 2023
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	<StructureSection load='5f1h' size='340' side='right'caption='[[5f1h]], [[Resolution\|resolution]] 1.82Å' scene=''>		<StructureSection load='5f1h' size='340' side='right'caption='[[5f1h]], [[Resolution\|resolution]] 1.82Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5f1h]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F1H OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5F1H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5f1h]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F1H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5F1H FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5U6:4-[4-[(DIMETHYLAMINO)METHYL]-2,5-DIMETHOXY-PHENYL]-2-METHYL-2,7-NAPHTHYRIDIN-1-ONE'>5U6</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.82Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5f1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1h OCA], [~~http~~://pdbe.org/5f1h PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5f1h RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5f1h PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5f1h ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5U6:4-[4-[(DIMETHYLAMINO)METHYL]-2,5-DIMETHOXY-PHENYL]-2-METHYL-2,7-NAPHTHYRIDIN-1-ONE'>5U6</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5f1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1h OCA], [https://pdbe.org/5f1h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5f1h RCSB], [https://www.ebi.ac.uk/pdbsum/5f1h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5f1h ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/BRD9_HUMAN BRD9_HUMAN]] May play a role in chromatin remodeling and regulation of transcription.	+	[https://www.uniprot.org/uniprot/BRD9_HUMAN BRD9_HUMAN] May play a role in chromatin remodeling and regulation of transcription.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bader, G]]	+	[[Category: Bader G]]
-	[[Category: Martin~~, L J~~]]	+	[[Category: Martin LJ]]
-	[[Category: Steurer, S]]	+	[[Category: Steurer S]]
-	[[Category: Weiss-Puxbaum, A]]	+	[[Category: Weiss-Puxbaum A]]
-	[[Category: Zoephel, A]]	+	[[Category: Zoephel A]]
-	~~[[Category: Bromodomain]]~~	+
-	~~[[Category: Inhibitor]]~~	+
-	~~[[Category: Transcription~~]]	+

OCA at 07:55, 29 April 2020

OCA — Wed, 29 Apr 2020 07:55:02 GMT

←Older revision		Revision as of 07:55, 29 April 2020
Line 1:		Line 1:

	==Crystal structure of the BRD9 bromodamian in complex with BI-9564.==		==Crystal structure of the BRD9 bromodamian in complex with BI-9564.==
-	<StructureSection load='5f1h' size='340' side='right' caption='[[5f1h]], [[Resolution\|resolution]] 1.82Å' scene=''>	+	<StructureSection load='5f1h' size='340' side='right'caption='[[5f1h]], [[Resolution\|resolution]] 1.82Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5f1h]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F1H OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5F1H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5f1h]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F1H OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5F1H FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5U6:4-[4-[(DIMETHYLAMINO)METHYL]-2,5-DIMETHOXY-PHENYL]-2-METHYL-2,7-NAPHTHYRIDIN-1-ONE'>5U6</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5U6:4-[4-[(DIMETHYLAMINO)METHYL]-2,5-DIMETHOXY-PHENYL]-2-METHYL-2,7-NAPHTHYRIDIN-1-ONE'>5U6</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5f1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1h OCA], [http://pdbe.org/5f1h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f1h RCSB], [http://www.ebi.ac.uk/pdbsum/5f1h PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5f1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1h OCA], [http://pdbe.org/5f1h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f1h RCSB], [http://www.ebi.ac.uk/pdbsum/5f1h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5f1h ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</div>		</div>
	<div class="pdbe-citations 5f1h" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5f1h" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Bromodomain-containing protein 3D structures\|Bromodomain-containing protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Bader, G]]		[[Category: Bader, G]]
	[[Category: Martin, L J]]		[[Category: Martin, L J]]

OCA at 03:40, 10 March 2016

OCA — Thu, 10 Mar 2016 03:40:35 GMT

←Older revision		Revision as of 03:40, 10 March 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5f1h is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of the BRD9 bromodamian in complex with BI-9564.==
		+	<StructureSection load='5f1h' size='340' side='right' caption='[[5f1h]], [[Resolution\|resolution]] 1.82Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5f1h]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5F1H FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5U6:4-[4-[(DIMETHYLAMINO)METHYL]-2,5-DIMETHOXY-PHENYL]-2-METHYL-2,7-NAPHTHYRIDIN-1-ONE'>5U6</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5f1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f1h OCA], [http://pdbe.org/5f1h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f1h RCSB], [http://www.ebi.ac.uk/pdbsum/5f1h PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/BRD9_HUMAN BRD9_HUMAN]] May play a role in chromatin remodeling and regulation of transcription.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Components of the chromatin remodelling SWI/SNF complex are recurrently mutated in tumours, suggesting that altering the activity of the complex plays a role in oncogenesis. However, the role that the individual subunits play in this process is not clear. We set out to develop an inhibitor compound targeting the bromodomain of BRD9 in order to evaluate its function within the SWI/SNF complex. Here, we present the discovery and development of a potent and selective BRD9 bromodomain inhibitor series based on a new pyridinone-like scaffold. Crystallographic information of the inhibitors bound to BRD9 guided their development with respect to potency for BRD9 and selectivity against BRD4. These compounds modulate BRD9 bromodomain cellular function and display anti-tumour activity in an AML xenograft model. Two chemical probes, BI-7273 (1) and BI-9564 (2), were identified that should prove useful in further exploring BRD9 bromodomain biology in both in vitro and in vivo settings.

-	~~Authors: Bader, G~~., Martin, ~~L.J.~~, ~~Steurer~~, S., ~~Weiss-Puxbaum~~, A., ~~Zoephel~~, A.	+	Structure-based design of an in vivo active selective BRD9 inhibitor.,Martin LJ, Koegl M, Bader G, Cockcroft XL, Fedorov O, Fiegen D, Gerstberger T, Hofmann MH, Hohmann AF, Kessler D, Knapp S, Knesl P, Kornigg S, Muller S, Nar H, Rogers C, Rumpel K, Schaaf O, Steurer S, Tallant C, Vakoc CR, Zeeb M, Zoephel A, Pearson M, Boehmelt G, McConnell D J Med Chem. 2016 Feb 25. PMID:26914985<ref>PMID:26914985</ref>

-	~~Description:~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category: Unreleased Structures]]~~	+	</div>
-	~~[[Category~~: ~~Steurer, S]]~~	+	<div class="pdbe-citations 5f1h" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bader, G]]		[[Category: Bader, G]]
-	[[Category: ~~Zoephel~~, A]]	+	[[Category: Martin, L J]]
		+	[[Category: Steurer, S]]
	[[Category: Weiss-Puxbaum, A]]		[[Category: Weiss-Puxbaum, A]]
-	[[Category: ~~Martin~~, ~~L.J~~]]	+	[[Category: Zoephel, A]]
		+	[[Category: Bromodomain]]
		+	[[Category: Inhibitor]]
		+	[[Category: Transcription]]

OCA at 11:06, 23 December 2015

OCA — Wed, 23 Dec 2015 11:06:11 GMT

←Older revision		Revision as of 11:06, 23 December 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5f1h is ON HOLD	+	The entry 5f1h is ON HOLD until Paper Publication

	Authors: Bader, G., Martin, L.J., Steurer, S., Weiss-Puxbaum, A., Zoephel, A.		Authors: Bader, G., Martin, L.J., Steurer, S., Weiss-Puxbaum, A., Zoephel, A.

OCA: Protected "5f1h" [edit=sysop:move=sysop]

OCA — Wed, 09 Dec 2015 12:28:53 GMT

Protected "5f1h" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:28, 9 December 2015

OCA: New page: '''Unreleased structure''' The entry 5f1h is ON HOLD Authors: Bader, G., Martin, L.J., Steurer, S., Weiss-Puxbaum, A., Zoephel, A. Description: Category: Unreleased Structures [[C...

OCA — Wed, 09 Dec 2015 12:28:52 GMT

New page: '''Unreleased structure''' The entry 5f1h is ON HOLD Authors: Bader, G., Martin, L.J., Steurer, S., Weiss-Puxbaum, A., Zoephel, A. Description: Category: Unreleased Structures [[C...

New page

'''Unreleased structure'''

The entry 5f1h is ON HOLD

Authors: Bader, G., Martin, L.J., Steurer, S., Weiss-Puxbaum, A., Zoephel, A.

Description:
[[Category: Unreleased Structures]]
[[Category: Steurer, S]]
[[Category: Bader, G]]
[[Category: Zoephel, A]]
[[Category: Weiss-Puxbaum, A]]
[[Category: Martin, L.J]]