5f53 - Revision history

OCA at 08:46, 12 July 2023

OCA — Wed, 12 Jul 2023 08:46:56 GMT

←Older revision		Revision as of 08:46, 12 July 2023
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	<StructureSection load='5f53' size='340' side='right'caption='[[5f53]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='5f53' size='340' side='right'caption='[[5f53]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5f53]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F53 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5F53 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5f53]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F53 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5F53 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CD:CADMIUM+ION'>CD</scene~~>, ~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[4zcn\|4zcn]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5f53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f53 OCA], [~~http~~://pdbe.org/5f53 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5f53 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5f53 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5f53 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5f53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f53 OCA], [https://pdbe.org/5f53 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5f53 RCSB], [https://www.ebi.ac.uk/pdbsum/5f53 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5f53 ProSAT]</span></td></tr>
	</table>		</table>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	We have engineered a metal-binding site into the novel artificial beta-propeller protein Pizza. This new Pizza variant carries two nearly identical domains per polypeptide chain, and forms a trimer with three-fold symmetry. The designed single metal ion binding site lies on the symmetry axis, bonding the trimer together. Two copies of the trimer associate in the presence of cadmium chloride in solution, and very high-resolution X-ray crystallographic analysis reveals a nanocrystal of cadmium chloride, sandwiched between two trimers of the protein. This nanocrystal, containing seven cadmium ions lying in a plane and twelve interspersed chloride ions, is the smallest reported to date. Our results indicate the feasibility of using rationally designed symmetrical proteins to biomineralize nanocrystals with useful properties.
-
-	Biomineralization of a Cadmium Chloride Nanocrystal by a Designed Symmetrical Protein.,Voet AR, Noguchi H, Addy C, Zhang KY, Tame JR Angew Chem Int Ed Engl. 2015 Jul 1. doi: 10.1002/anie.201503575. PMID:26136355<ref>PMID:26136355</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 5f53" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Tame, J R.H~~]]	+	[[Category: Synthetic construct]]
-	[[Category: ~~Voet, A R.D~~]]	+	[[Category: Tame JRH]]
-	[[Category: ~~Computational protein design]]~~	+	[[Category: Voet ARD]]
-	~~[[Category: De novo protein]]~~	+
-	~~[[Category: Metal coordination complex]]~~	+
-	~~[[Category: Self-assembly~~]]	+

OCA at 07:14, 19 February 2020

OCA — Wed, 19 Feb 2020 07:14:25 GMT

←Older revision		Revision as of 07:14, 19 February 2020
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	==Nano-ring of cadmium ions coordinated by nvPizza2-S16S58==		==Nano-ring of cadmium ions coordinated by nvPizza2-S16S58==
-	<StructureSection load='5f53' size='340' side='right' caption='[[5f53]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='5f53' size='340' side='right'caption='[[5f53]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5f53]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F53 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5F53 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5f53]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F53 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5F53 FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Tame, J R.H]]		[[Category: Tame, J R.H]]
	[[Category: Voet, A R.D]]		[[Category: Voet, A R.D]]

OCA at 19:05, 15 December 2016

OCA — Thu, 15 Dec 2016 19:05:50 GMT

←Older revision		Revision as of 19:05, 15 December 2016
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-	'''Unreleased structure'''

-	~~The entry~~ 5f53 is ~~ON HOLD until Paper~~ Publication	+	==Nano-ring of cadmium ions coordinated by nvPizza2-S16S58==
		+	<StructureSection load='5f53' size='340' side='right' caption='[[5f53]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5f53]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F53 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5F53 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4zcn\|4zcn]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5f53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f53 OCA], [http://pdbe.org/5f53 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f53 RCSB], [http://www.ebi.ac.uk/pdbsum/5f53 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5f53 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We have engineered a metal-binding site into the novel artificial beta-propeller protein Pizza. This new Pizza variant carries two nearly identical domains per polypeptide chain, and forms a trimer with three-fold symmetry. The designed single metal ion binding site lies on the symmetry axis, bonding the trimer together. Two copies of the trimer associate in the presence of cadmium chloride in solution, and very high-resolution X-ray crystallographic analysis reveals a nanocrystal of cadmium chloride, sandwiched between two trimers of the protein. This nanocrystal, containing seven cadmium ions lying in a plane and twelve interspersed chloride ions, is the smallest reported to date. Our results indicate the feasibility of using rationally designed symmetrical proteins to biomineralize nanocrystals with useful properties.

-	~~Authors:~~ Voet, ~~A.R.D.~~, ~~Tame~~, J.R.H.	+	Biomineralization of a Cadmium Chloride Nanocrystal by a Designed Symmetrical Protein.,Voet AR, Noguchi H, Addy C, Zhang KY, Tame JR Angew Chem Int Ed Engl. 2015 Jul 1. doi: 10.1002/anie.201503575. PMID:26136355<ref>PMID:26136355</ref>

-	~~Description: Nano-ring~~ of ~~cadmium ions coordinated by nvPizza2~~-~~S16S58~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: Voet, A.R.D]]	+	<div class="pdbe-citations 5f53" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Tame, J.R.H~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Tame, J R.H]]
		+	[[Category: Voet, A R.D]]
		+	[[Category: Computational protein design]]
		+	[[Category: De novo protein]]
		+	[[Category: Metal coordination complex]]
		+	[[Category: Self-assembly]]

OCA at 10:39, 7 January 2016

OCA — Thu, 07 Jan 2016 10:39:18 GMT

←Older revision		Revision as of 10:39, 7 January 2016
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5f53 is ON HOLD	+	The entry 5f53 is ON HOLD until Paper Publication

	Authors: Voet, A.R.D., Tame, J.R.H.		Authors: Voet, A.R.D., Tame, J.R.H.

OCA: Protected "5f53" [edit=sysop:move=sysop]

OCA — Wed, 09 Dec 2015 12:38:53 GMT

Protected "5f53" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:38, 9 December 2015

OCA: New page: '''Unreleased structure''' The entry 5f53 is ON HOLD Authors: Voet, A.R.D., Tame, J.R.H. Description: Nano-ring of cadmium ions coordinated by nvPizza2-S16S58 [[Category: Unreleased St...

OCA — Wed, 09 Dec 2015 12:38:52 GMT

New page: '''Unreleased structure''' The entry 5f53 is ON HOLD Authors: Voet, A.R.D., Tame, J.R.H. Description: Nano-ring of cadmium ions coordinated by nvPizza2-S16S58 [[Category: Unreleased St...

New page

'''Unreleased structure'''

The entry 5f53 is ON HOLD

Authors: Voet, A.R.D., Tame, J.R.H.

Description: Nano-ring of cadmium ions coordinated by nvPizza2-S16S58
[[Category: Unreleased Structures]]
[[Category: Voet, A.R.D]]
[[Category: Tame, J.R.H]]