5fda - Revision history

OCA at 06:46, 19 July 2023

OCA — Wed, 19 Jul 2023 06:46:56 GMT

←Older revision		Revision as of 06:46, 19 July 2023
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	==The high resolution structure of apo form dihydrofolate reductase from Yersinia pestis at 1.55 A==		==The high resolution structure of apo form dihydrofolate reductase from Yersinia pestis at 1.55 A==
-	<StructureSection load='5fda' size='340' side='right' caption='[[5fda]], [[Resolution\|resolution]] 1.55Å' scene=''>	+	<StructureSection load='5fda' size='340' side='right'caption='[[5fda]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5fda]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Yersinia_pestis_co92~~ Yersinia pestis ~~co92~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FDA OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5FDA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5fda]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_CO92 Yersinia pestis CO92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FDA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FDA FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.549Å</td></tr>
-	~~<tr~~ id~~='NonStdRes'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Non-Standard_Residue~~\|~~NonStd Res:~~]]~~</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>folA, AK38_2080 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~214092 Yersinia pestis CO92])</td~~><~~/tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fda FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fda OCA], [https://pdbe.org/5fda PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fda RCSB], [https://www.ebi.ac.uk/pdbsum/5fda PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fda ProSAT]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Dihydrofolate_reductase Dihydrofolate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.1.3 1.5.1.3]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5fda FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fda OCA], [~~http~~://pdbe.org/5fda PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5fda RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5fda PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5fda ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~A0A0B6NYF5_YERPE A0A0B6NYF5_YERPE]~~] Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.[PIRNR:PIRNR000194]	+	[https://www.uniprot.org/uniprot/A0A3N4BLI0_YERPE A0A3N4BLI0_YERPE] Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.[ARBA:ARBA00025067][PIRNR:PIRNR000194]
		+
		+	==See Also==
		+	*[[Dihydrofolate reductase 3D structures\|Dihydrofolate reductase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Dihydrofolate reductase~~]]	+	[[Category: Large Structures]]
-	[[Category: Yersinia pestis ~~co92~~]]	+	[[Category: Yersinia pestis CO92]]
-	[[Category: Anderson~~, W F]]~~	+	[[Category: Anderson WF]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Chang C]]
-	[[Category: Chang, C]]	+	[[Category: Joachimiak A]]
-	[[Category: Joachimiak, A]]	+	[[Category: Kim Y]]
-	[[Category: Kim, Y]]	+	[[Category: Makowska-Grzyska M]]
-	[[Category: Makowska-Grzyska, M]]	+	[[Category: Maltseva N]]
-	[[Category: Maltseva, N]]	+	[[Category: Mulligan R]]
-	[[Category: Mulligan, R]]	+	[[Category: Papazisi L]]
-	[[Category: Papazisi, L]]	+
-	~~[[Category: Csgid]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Yersinia pesti~~]]	+

OCA at 20:30, 24 January 2018

OCA — Wed, 24 Jan 2018 20:30:42 GMT

←Older revision		Revision as of 20:30, 24 January 2018
Line 1:		Line 1:
		+
	==The high resolution structure of apo form dihydrofolate reductase from Yersinia pestis at 1.55 A==		==The high resolution structure of apo form dihydrofolate reductase from Yersinia pestis at 1.55 A==
	<StructureSection load='5fda' size='340' side='right' caption='[[5fda]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='5fda' size='340' side='right' caption='[[5fda]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5fda]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FDA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FDA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5fda]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis_co92 Yersinia pestis co92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FDA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FDA FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">folA, AK38_2080 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=214092 Yersinia pestis CO92])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dihydrofolate_reductase Dihydrofolate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.1.3 1.5.1.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dihydrofolate_reductase Dihydrofolate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.1.3 1.5.1.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fda FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fda OCA], [http://pdbe.org/5fda PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fda RCSB], [http://www.ebi.ac.uk/pdbsum/5fda PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fda FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fda OCA], [http://pdbe.org/5fda PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fda RCSB], [http://www.ebi.ac.uk/pdbsum/5fda PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fda ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 15:
	</StructureSection>		</StructureSection>
	[[Category: Dihydrofolate reductase]]		[[Category: Dihydrofolate reductase]]
		+	[[Category: Yersinia pestis co92]]
	[[Category: Anderson, W F]]		[[Category: Anderson, W F]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 19:41, 30 December 2015

OCA — Wed, 30 Dec 2015 19:41:33 GMT

←Older revision		Revision as of 19:41, 30 December 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==The high resolution structure of apo form dihydrofolate reductase from Yersinia pestis at 1.55 A==
-		+	<StructureSection load='5fda' size='340' side='right' caption='[[5fda]], [[Resolution\|resolution]] 1.55Å' scene=''>
-	~~The entry~~ 5fda is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5fda]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FDA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FDA FirstGlance]. <br>
-	~~Authors~~: ~~Chang, C~~.~~, Maltseva, N~~., ~~Kim, Y~~.~~, Makowska~~-~~Grzyska, M~~.~~, Mulligan, R~~., ~~Papazisi, L~~., ~~Anderson~~, W.F., ~~Joachimiak, A~~., ~~Center~~ for ~~Structural Genomics of Infectious Diseases (CSGID)~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~Description~~: ~~The high resolution structure of apo form dihydrofolate~~ reductase ~~from Yersinia pestis at 1.55 A~~	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dihydrofolate_reductase Dihydrofolate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.1.3 1.5.1.3] </span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fda FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fda OCA], [http://pdbe.org/5fda PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fda RCSB], [http://www.ebi.ac.uk/pdbsum/5fda PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/A0A0B6NYF5_YERPE A0A0B6NYF5_YERPE]] Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.[PIRNR:PIRNR000194]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Dihydrofolate reductase]]
		+	[[Category: Anderson, W F]]
		+	[[Category: Structural genomic]]
		+	[[Category: Chang, C]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]
-	[[Category: ~~Papazisi~~, ~~L]]~~	+	[[Category: Kim, Y]]
-	~~[[Category: Mulligan, R~~]]	+
	[[Category: Makowska-Grzyska, M]]		[[Category: Makowska-Grzyska, M]]
	[[Category: Maltseva, N]]		[[Category: Maltseva, N]]
-	[[Category: ~~Anderson~~, ~~W.F~~]]	+	[[Category: Mulligan, R]]
-	[[Category: ~~Center For Structural Genomics Of Infectious Diseases (~~Csgid)]]	+	[[Category: Papazisi, L]]
-	[[Category: ~~Kim, Y~~]]	+	[[Category: Csgid]]
-	[[Category: ~~Chang, C~~]]	+	[[Category: Oxidoreductase]]
		+	[[Category: Yersinia pesti]]

OCA: Protected "5fda" [edit=sysop:move=sysop]

OCA — Wed, 23 Dec 2015 11:29:53 GMT

Protected "5fda" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:29, 23 December 2015

OCA: New page: '''Unreleased structure''' The entry 5fda is ON HOLD Authors: Chang, C., Maltseva, N., Kim, Y., Makowska-Grzyska, M., Mulligan, R., Papazisi, L., Anderson, W.F., Joachimiak, A., Center ...

OCA — Wed, 23 Dec 2015 11:29:52 GMT

New page: '''Unreleased structure''' The entry 5fda is ON HOLD Authors: Chang, C., Maltseva, N., Kim, Y., Makowska-Grzyska, M., Mulligan, R., Papazisi, L., Anderson, W.F., Joachimiak, A., Center ...

New page

'''Unreleased structure'''

The entry 5fda is ON HOLD

Authors: Chang, C., Maltseva, N., Kim, Y., Makowska-Grzyska, M., Mulligan, R., Papazisi, L., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Description: The high resolution structure of apo form dihydrofolate reductase from Yersinia pestis at 1.55 A
[[Category: Unreleased Structures]]
[[Category: Joachimiak, A]]
[[Category: Papazisi, L]]
[[Category: Mulligan, R]]
[[Category: Makowska-Grzyska, M]]
[[Category: Maltseva, N]]
[[Category: Anderson, W.F]]
[[Category: Center For Structural Genomics Of Infectious Diseases (Csgid)]]
[[Category: Kim, Y]]
[[Category: Chang, C]]