5fm6 - Revision history

OCA at 06:56, 19 July 2023

OCA — Wed, 19 Jul 2023 06:56:56 GMT

←Older revision		Revision as of 06:56, 19 July 2023
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	<StructureSection load='5fm6' size='340' side='right'caption='[[5fm6]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='5fm6' size='340' side='right'caption='[[5fm6]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5fm6]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Cbs_144.50 Cbs 144.50~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FM6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5FM6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5fm6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chaetomium_thermophilum Chaetomium thermophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FM6 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ADP:ADENOSINE~~-~~5-DIPHOSPHATE'>ADP</scene>~~, ~~<scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.997Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<~~tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td>~~<td class="sblockDat">[[5flv\|5flv]], [[5fm7\|5fm7]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fm6 OCA], [https://pdbe.org/5fm6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fm6 RCSB], [https://www.ebi.ac.uk/pdbsum/5fm6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fm6 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5fm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fm6 OCA], [~~http~~://pdbe.org/5fm6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5fm6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5fm6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5fm6 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/G0RYI5_CHATD G0RYI5_CHATD]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cbs 144 50~~]]	+	[[Category: Chaetomium thermophilum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Dauden~~, M I~~]]	+	[[Category: Dauden MI]]
-	[[Category: Glatt, S]]	+	[[Category: Glatt S]]
-	[[Category: Hoffmann~~, N A~~]]	+	[[Category: Hoffmann NA]]
-	[[Category: Mueller~~, C W~~]]	+	[[Category: Mueller CW]]
-	[[Category: Silva-Martin, N]]	+	[[Category: Silva-Martin N]]
-	~~[[Category: Adp]]~~	+
-	~~[[Category: Atp binding protein]]~~	+
-	~~[[Category: Rvb1]]~~	+
-	~~[[Category: Rvb2]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 07:25, 6 May 2020

OCA — Wed, 06 May 2020 07:25:12 GMT

←Older revision		Revision as of 07:25, 6 May 2020
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		+
	==Double-heterohexameric rings of full-length Rvb1(ADP)Rvb2(apo)==		==Double-heterohexameric rings of full-length Rvb1(ADP)Rvb2(apo)==
-	<StructureSection load='5fm6' size='340' side='right' caption='[[5fm6]], [[Resolution\|resolution]] 3.00Å' scene=''>	+	<StructureSection load='5fm6' size='340' side='right'caption='[[5fm6]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5fm6]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FM6 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5FM6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5fm6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cbs_144.50 Cbs 144.50]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FM6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5FM6 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5flv\|5flv]], [[5fm7\|5fm7]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5flv\|5flv]], [[5fm7\|5fm7]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5fm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fm6 OCA], [http://pdbe.org/5fm6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fm6 RCSB], [http://www.ebi.ac.uk/pdbsum/5fm6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5fm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fm6 OCA], [http://pdbe.org/5fm6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fm6 RCSB], [http://www.ebi.ac.uk/pdbsum/5fm6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fm6 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Cbs 144 50]]
		+	[[Category: Large Structures]]
	[[Category: Dauden, M I]]		[[Category: Dauden, M I]]
	[[Category: Glatt, S]]		[[Category: Glatt, S]]

OCA at 16:59, 20 January 2016

OCA — Wed, 20 Jan 2016 16:59:56 GMT

←Older revision		Revision as of 16:59, 20 January 2016
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==Double-heterohexameric rings of full-length Rvb1(ADP)Rvb2(apo)==
		+	<StructureSection load='5fm6' size='340' side='right' caption='[[5fm6]], [[Resolution\|resolution]] 3.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5fm6]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FM6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FM6 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5flv\|5flv]], [[5fm7\|5fm7]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fm6 OCA], [http://pdbe.org/5fm6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fm6 RCSB], [http://www.ebi.ac.uk/pdbsum/5fm6 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The Rvb1/Rvb2 complex is an essential component of many cellular pathways. The Rvb1/Rvb2 complex forms a dodecameric assembly where six copies of each subunit form two heterohexameric rings. However, due to conformational variability, the way the two rings pack together is still not fully understood. Here, we present the crystal structure and two cryo-electron microscopy reconstructions of the dodecameric, full-length Rvb1/Rvb2 complex, all showing that the interaction between the two heterohexameric rings is mediated through the Rvb1/Rvb2-specific domain II. Two conformations of the Rvb1/Rvb2 dodecamer are present in solution: a stretched conformation also present in the crystal, and a compact conformation. Novel asymmetric features observed in the reconstruction of the compact conformation provide additional insight into the plasticity of the Rvb1/Rvb2 complex.

-	The ~~entry 5fm6 is ON HOLD until Paper Publication~~	+	The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex.,Silva-Martin N, Dauden MI, Glatt S, Hoffmann NA, Kastritis P, Bork P, Beck M, Muller CW PLoS One. 2016 Jan 8;11(1):e0146457. doi: 10.1371/journal.pone.0146457., eCollection 2016. PMID:26745716<ref>PMID:26745716</ref>

-	~~Authors: Silva-Martin~~, N.~~, Dauden, M.I., Glatt,~~ S.~~, Hoffmann, N.A., Mueller, C.W~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description: Double~~-~~heterohexameric rings of full~~-~~length Rvb1(ADP)Rvb2(apo)~~	+	<div class="pdbe-citations 5fm6" style="background-color:#fffaf0;"></div>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	== References ==
-	~~[[Category: Mueller, C.W]]~~	+	<references/>
-	~~[[Category: Hoffmann, N.A]]~~	+	__TOC__
-	[[Category: Dauden, M.I]]	+	</StructureSection>
		+	[[Category: Dauden, M I]]
	[[Category: Glatt, S]]		[[Category: Glatt, S]]
		+	[[Category: Hoffmann, N A]]
		+	[[Category: Mueller, C W]]
	[[Category: Silva-Martin, N]]		[[Category: Silva-Martin, N]]
		+	[[Category: Adp]]
		+	[[Category: Atp binding protein]]
		+	[[Category: Rvb1]]
		+	[[Category: Rvb2]]
		+	[[Category: Unknown function]]

OCA: Protected "5fm6" [edit=sysop:move=sysop]

OCA — Tue, 01 Dec 2015 03:35:15 GMT

Protected "5fm6" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:35, 1 December 2015

OCA: New page: '''Unreleased structure''' The entry 5fm6 is ON HOLD until Paper Publication Authors: Silva-Martin, N., Dauden, M.I., Glatt, S., Hoffmann, N.A., Mueller, C.W. Description: Double-heter...

OCA — Tue, 01 Dec 2015 03:35:14 GMT

New page: '''Unreleased structure''' The entry 5fm6 is ON HOLD until Paper Publication Authors: Silva-Martin, N., Dauden, M.I., Glatt, S., Hoffmann, N.A., Mueller, C.W. Description: Double-heter...

New page

'''Unreleased structure'''

The entry 5fm6 is ON HOLD until Paper Publication

Authors: Silva-Martin, N., Dauden, M.I., Glatt, S., Hoffmann, N.A., Mueller, C.W.

Description: Double-heterohexameric rings of full-length Rvb1(ADP)Rvb2(apo)
[[Category: Unreleased Structures]]
[[Category: Mueller, C.W]]
[[Category: Hoffmann, N.A]]
[[Category: Dauden, M.I]]
[[Category: Glatt, S]]
[[Category: Silva-Martin, N]]