5gqh - Revision history

OCA at 11:39, 2 August 2023

OCA — Wed, 02 Aug 2023 11:39:20 GMT

←Older revision		Revision as of 11:39, 2 August 2023
Line 3:		Line 3:
	<SX load='5gqh' size='340' side='right' viewer='molstar' caption='[[5gqh]], [[Resolution\|resolution]] 4.20Å' scene=''>		<SX load='5gqh' size='340' side='right' viewer='molstar' caption='[[5gqh]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5gqh]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Pseab Pseab~~] and [~~http~~://en.wikipedia.org/wiki/~~Pseudomonas_phage_jbd5~~ Pseudomonas phage ~~jbd5~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GQH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5GQH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5gqh]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_UCBPP-PA14 Pseudomonas aeruginosa UCBPP-PA14] and [https://en.wikipedia.org/wiki/Pseudomonas_phage_JBD5 Pseudomonas phage JBD5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GQH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GQH FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>cas3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~208963 PSEAB])~~, ~~JBD5_035 (~~[~~http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=1223261 Pseudomonas phage JBD5])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 4.2Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5gqh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gqh OCA], [~~http~~://pdbe.org/5gqh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5gqh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5gqh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5gqh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gqh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gqh OCA], [https://pdbe.org/5gqh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gqh RCSB], [https://www.ebi.ac.uk/pdbsum/5gqh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gqh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/CAS3_PSEAB CAS3_PSEAB]] CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Cas3 plus Cascade participate in CRISPR interference, the third stage of CRISPR immunity (Potential). In this bacteria Y.pestis-subtype CRISPRs do not confer resistance to phage DSM3 or MP22, but instead are required for DMS3-dependent inhibition of biofilm formation and possibly motility.<ref>PMID:21398535</ref>	+	[https://www.uniprot.org/uniprot/CAS3_PSEAB CAS3_PSEAB] CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Cas3 plus Cascade participate in CRISPR interference, the third stage of CRISPR immunity (Potential). In this bacteria Y.pestis-subtype CRISPRs do not confer resistance to phage DSM3 or MP22, but instead are required for DMS3-dependent inhibition of biofilm formation and possibly motility.<ref>PMID:21398535</ref>

	==See Also==		==See Also==
Line 18:		Line 18:
	</SX>		</SX>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Pseab~~]]	+	[[Category: Pseudomonas aeruginosa UCBPP-PA14]]
-	[[Category: Pseudomonas phage ~~jbd5~~]]	+	[[Category: Pseudomonas phage JBD5]]
-	[[Category: Ma, J]]	+	[[Category: Ma J]]
-	[[Category: Wang, J]]	+	[[Category: Wang J]]
-	[[Category: Wang, Y]]	+	[[Category: Wang Y]]
-	[[Category: Zhang, X]]	+	[[Category: Zhang X]]
-	~~[[Category: Crispr/cas system anti-crispr proteins cas3 acrf3]]~~	+
-	~~[[Category: Hydrolase-hydrolase inhibitor complex~~]]	+

OCA at 20:07, 10 April 2020

OCA — Fri, 10 Apr 2020 20:07:26 GMT

←Older revision		Revision as of 20:07, 10 April 2020
Line 3:		Line 3:
	<SX load='5gqh' size='340' side='right' viewer='molstar' caption='[[5gqh]], [[Resolution\|resolution]] 4.20Å' scene=''>		<SX load='5gqh' size='340' side='right' viewer='molstar' caption='[[5gqh]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5gqh]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseab Pseab] and [http://en.wikipedia.org/wiki/Pseudomonas_phage_jbd5 Pseudomonas phage jbd5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GQH OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5GQH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5gqh]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseab Pseab] and [http://en.wikipedia.org/wiki/Pseudomonas_phage_jbd5 Pseudomonas phage jbd5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GQH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5GQH FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cas3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208963 PSEAB]), JBD5_035 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223261 Pseudomonas phage JBD5])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cas3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208963 PSEAB]), JBD5_035 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223261 Pseudomonas phage JBD5])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5gqh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gqh OCA], [http://pdbe.org/5gqh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gqh RCSB], [http://www.ebi.ac.uk/pdbsum/5gqh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gqh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5gqh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gqh OCA], [http://pdbe.org/5gqh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gqh RCSB], [http://www.ebi.ac.uk/pdbsum/5gqh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gqh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 18:29, 6 March 2020

OCA — Fri, 06 Mar 2020 18:29:28 GMT

←Older revision		Revision as of 18:29, 6 March 2020
Line 1:		Line 1:

	==Cryo-EM structure of PaeCas3-AcrF3 complex==		==Cryo-EM structure of PaeCas3-AcrF3 complex==
-	<~~StructureSection~~ load='5gqh' size='340' side='right'caption='[[5gqh]], [[Resolution\|resolution]] 4.20Å' scene=''>	+	<SX load='5gqh' size='340' side='right' viewer='molstar' caption='[[5gqh]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5gqh]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseab Pseab] and [http://en.wikipedia.org/wiki/Pseudomonas_phage_jbd5 Pseudomonas phage jbd5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GQH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GQH FirstGlance]. <br>		<table><tr><td colspan='2'>[[5gqh]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseab Pseab] and [http://en.wikipedia.org/wiki/Pseudomonas_phage_jbd5 Pseudomonas phage jbd5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GQH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GQH FirstGlance]. <br>
Line 16:		Line 16:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Pseab]]		[[Category: Pseab]]

OCA at 07:14, 6 November 2019

OCA — Wed, 06 Nov 2019 07:14:09 GMT

←Older revision		Revision as of 07:14, 6 November 2019
Line 1:		Line 1:

	==Cryo-EM structure of PaeCas3-AcrF3 complex==		==Cryo-EM structure of PaeCas3-AcrF3 complex==
-	<StructureSection load='5gqh' size='340' side='right' caption='[[5gqh]], [[Resolution\|resolution]] 4.20Å' scene=''>	+	<StructureSection load='5gqh' size='340' side='right'caption='[[5gqh]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5gqh]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GQH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GQH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5gqh]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseab Pseab] and [http://en.wikipedia.org/wiki/Pseudomonas_phage_jbd5 Pseudomonas phage jbd5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GQH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GQH FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gqh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gqh OCA], [http://pdbe.org/5gqh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gqh RCSB], [http://www.ebi.ac.uk/pdbsum/5gqh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gqh ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cas3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208963 PSEAB]), JBD5_035 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223261 Pseudomonas phage JBD5])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gqh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gqh OCA], [http://pdbe.org/5gqh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gqh RCSB], [http://www.ebi.ac.uk/pdbsum/5gqh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gqh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/CAS3_PSEAB CAS3_PSEAB]] CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Cas3 plus Cascade participate in CRISPR interference, the third stage of CRISPR immunity (Potential). In this bacteria Y.pestis-subtype CRISPRs do not confer resistance to phage DSM3 or MP22, but instead are required for DMS3-dependent inhibition of biofilm formation and possibly motility.<ref>PMID:21398535</ref>		[[http://www.uniprot.org/uniprot/CAS3_PSEAB CAS3_PSEAB]] CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Cas3 plus Cascade participate in CRISPR interference, the third stage of CRISPR immunity (Potential). In this bacteria Y.pestis-subtype CRISPRs do not confer resistance to phage DSM3 or MP22, but instead are required for DMS3-dependent inhibition of biofilm formation and possibly motility.<ref>PMID:21398535</ref>
		+
		+	==See Also==
		+	*[[CRISPR subtype I-F\|CRISPR subtype I-F]]
		+	*[[Helicase 3D structures\|Helicase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Pseab]]
		+	[[Category: Pseudomonas phage jbd5]]
	[[Category: Ma, J]]		[[Category: Ma, J]]
	[[Category: Wang, J]]		[[Category: Wang, J]]

OCA at 13:51, 21 September 2016

OCA — Wed, 21 Sep 2016 13:51:15 GMT

←Older revision		Revision as of 13:51, 21 September 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5gqh is ~~ON HOLD~~ ~~until Paper Publication~~	+	==Cryo-EM structure of PaeCas3-AcrF3 complex==
-		+	<StructureSection load='5gqh' size='340' side='right' caption='[[5gqh]], [[Resolution\|resolution]] 4.20Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5gqh]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GQH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GQH FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gqh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gqh OCA], [http://pdbe.org/5gqh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gqh RCSB], [http://www.ebi.ac.uk/pdbsum/5gqh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gqh ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CAS3_PSEAB CAS3_PSEAB]] CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Cas3 plus Cascade participate in CRISPR interference, the third stage of CRISPR immunity (Potential). In this bacteria Y.pestis-subtype CRISPRs do not confer resistance to phage DSM3 or MP22, but instead are required for DMS3-dependent inhibition of biofilm formation and possibly motility.<ref>PMID:21398535</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Ma, J]]
		+	[[Category: Wang, J]]
		+	[[Category: Wang, Y]]
		+	[[Category: Zhang, X]]
		+	[[Category: Crispr/cas system anti-crispr proteins cas3 acrf3]]
		+	[[Category: Hydrolase-hydrolase inhibitor complex]]

OCA at 10:22, 14 September 2016

OCA — Wed, 14 Sep 2016 10:22:06 GMT

←Older revision		Revision as of 10:22, 14 September 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5gqh is ON HOLD	+	The entry 5gqh is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5gqh" [edit=sysop:move=sysop]

OCA — Fri, 09 Sep 2016 11:56:23 GMT

Protected "5gqh" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:56, 9 September 2016

OCA: New page: '''Unreleased structure''' The entry 5gqh is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Fri, 09 Sep 2016 11:56:22 GMT

New page: '''Unreleased structure''' The entry 5gqh is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5gqh is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]