5gz5 - Revision history

OCA at 11:46, 2 August 2023

OCA — Wed, 02 Aug 2023 11:46:34 GMT

←Older revision		Revision as of 11:46, 2 August 2023
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	<StructureSection load='5gz5' size='340' side='right'caption='[[5gz5]], [[Resolution\|resolution]] 2.09Å' scene=''>		<StructureSection load='5gz5' size='340' side='right'caption='[[5gz5]], [[Resolution\|resolution]] 2.09Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5gz5]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Naja_atra Naja atra]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GZ5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5GZ5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5gz5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Naja_atra Naja atra]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GZ5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.093Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5gz4\|5gz4]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5gz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gz5 OCA], [~~http~~://pdbe.org/5gz5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5gz5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5gz5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5gz5 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gz5 OCA], [https://pdbe.org/5gz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gz5 RCSB], [https://www.ebi.ac.uk/pdbsum/5gz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gz5 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/PDE_NAJAT PDE_NAJAT]

	==See Also==		==See Also==
Line 15:		Line 17:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Naja atra]]		[[Category: Naja atra]]
-	[[Category: Lin~~, C C~~]]	+	[[Category: Lin CC]]
-	[[Category: Wu~~, B S~~]]	+	[[Category: Wu BS]]
-	[[Category: Wu~~, W G]]~~	+	[[Category: Wu WG]]
-	~~[[Category: Amp]]~~	+
-	~~[[Category: Calcium]]~~	+
-	~~[[Category: Enpp]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: N-glycan]]~~	+
-	~~[[Category: Phsophodiesterase]]~~	+
-	~~[[Category: Zinc~~]]	+

OCA at 06:46, 20 May 2020

OCA — Wed, 20 May 2020 06:46:56 GMT

←Older revision		Revision as of 06:46, 20 May 2020
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	==Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP==		==Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP==
-	<StructureSection load='5gz5' size='340' side='right' caption='[[5gz5]], [[Resolution\|resolution]] 2.09Å' scene=''>	+	<StructureSection load='5gz5' size='340' side='right'caption='[[5gz5]], [[Resolution\|resolution]] 2.09Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5gz5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Naja_atra Naja atra]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5GZ5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5gz5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Naja_atra Naja atra]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5GZ5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5gz4\|5gz4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5gz4\|5gz4]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5gz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gz5 OCA], [http://pdbe.org/5gz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gz5 RCSB], [http://www.ebi.ac.uk/pdbsum/5gz5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gz5 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5gz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gz5 OCA], [http://pdbe.org/5gz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gz5 RCSB], [http://www.ebi.ac.uk/pdbsum/5gz5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gz5 ProSAT]</span></td></tr>
	</table>		</table>
		+
		+	==See Also==
		+	*[[Phosphodiesterase 3D structures\|Phosphodiesterase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Naja atra]]		[[Category: Naja atra]]
	[[Category: Lin, C C]]		[[Category: Lin, C C]]

OCA at 11:44, 6 November 2017

OCA — Mon, 06 Nov 2017 11:44:33 GMT

←Older revision		Revision as of 11:44, 6 November 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 5gz5 is ON HOLD until Paper Publication~~	+	==Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP==
-		+	<StructureSection load='5gz5' size='340' side='right' caption='[[5gz5]], [[Resolution\|resolution]] 2.09Å' scene=''>
-	~~Authors: Lin, C.C., Wu, B.S., Wu, W.G.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5gz5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Naja_atra Naja atra]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GZ5 FirstGlance]. <br>
-	~~Description:~~ Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5gz4\|5gz4]]</td></tr>
-	[[~~Category~~: Wu, B.S]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gz5 OCA], [http://pdbe.org/5gz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gz5 RCSB], [http://www.ebi.ac.uk/pdbsum/5gz5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gz5 ProSAT]</span></td></tr>
-	[[Category: Lin, C.C]]	+	</table>
-	[[Category: Wu, W.G]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Naja atra]]
		+	[[Category: Lin, C C]]
		+	[[Category: Wu, B S]]
		+	[[Category: Wu, W G]]
		+	[[Category: Amp]]
		+	[[Category: Calcium]]
		+	[[Category: Enpp]]
		+	[[Category: Hydrolase]]
		+	[[Category: N-glycan]]
		+	[[Category: Phsophodiesterase]]
		+	[[Category: Zinc]]

OCA at 09:18, 9 March 2017

OCA — Thu, 09 Mar 2017 09:18:49 GMT

←Older revision		Revision as of 09:18, 9 March 2017
Line 7:		Line 7:
	Description: Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP		Description: Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Wu, B.S]]
	[[Category: Lin, C.C]]		[[Category: Lin, C.C]]
	[[Category: Wu, W.G]]		[[Category: Wu, W.G]]
-	[[Category: Wu, B.S]]

OCA at 13:34, 9 December 2016

OCA — Fri, 09 Dec 2016 13:34:30 GMT

←Older revision		Revision as of 13:34, 9 December 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5gz5 is ON HOLD	+	The entry 5gz5 is ON HOLD until Paper Publication

	Authors: Lin, C.C., Wu, B.S., Wu, W.G.		Authors: Lin, C.C., Wu, B.S., Wu, W.G.

OCA: Protected "5gz5" [edit=sysop:move=sysop]

OCA — Wed, 05 Oct 2016 16:20:39 GMT

Protected "5gz5" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:20, 5 October 2016

OCA: New page: '''Unreleased structure''' The entry 5gz5 is ON HOLD Authors: Lin, C.C., Wu, B.S., Wu, W.G. Description: Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naj...

OCA — Wed, 05 Oct 2016 16:20:37 GMT

New page: '''Unreleased structure''' The entry 5gz5 is ON HOLD Authors: Lin, C.C., Wu, B.S., Wu, W.G. Description: Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naj...

New page

'''Unreleased structure'''

The entry 5gz5 is ON HOLD

Authors: Lin, C.C., Wu, B.S., Wu, W.G.

Description: Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP
[[Category: Unreleased Structures]]
[[Category: Lin, C.C]]
[[Category: Wu, W.G]]
[[Category: Wu, B.S]]