5h43 - Revision history

OCA at 07:23, 9 August 2023

OCA — Wed, 09 Aug 2023 07:23:13 GMT

←Older revision		Revision as of 07:23, 9 August 2023
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	==Structural and mechanistical studies of the nuclear import by Importin-alpha==		==Structural and mechanistical studies of the nuclear import by Importin-alpha==
-	<StructureSection load='5h43' size='340' side='right' caption='[[5h43]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='5h43' size='340' side='right'caption='[[5h43]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5h43]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H43 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5H43 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5h43]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H43 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5H43 FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>KPNA2, RCH1, SRP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id~~=9606 HUMAN]), KAT8, MOF, MYST1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	~~<tr id='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>~~[~~http://en.wikipedia.org/wiki/Histone_acetyltransferase Histone acetyltransferase~~]~~, with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=~~2.3~~.1.48 2.3.1.48] </span>~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5h43 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h43 OCA], [https://pdbe.org/5h43 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5h43 RCSB], [https://www.ebi.ac.uk/pdbsum/5h43 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5h43 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5h43 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h43 OCA], [~~http~~://pdbe.org/5h43 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5h43 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5h43 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5h43 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/IMA1_HUMAN IMA1_HUMAN]] Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. [[http://www.uniprot.org/uniprot/KAT8_HUMAN KAT8_HUMAN]] Histone acetyltransferase which may be involved in transcriptional activation. May influence the function of ATM. As part of the MSL complex it is involved in acetylation of nucleosomal histone H4 producing specifically H4K16ac. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. That activity is less specific than the one of the MSL complex.<ref>PMID:12397079</ref> <ref>PMID:15923642</ref> <ref>PMID:20018852</ref>	+	[https://www.uniprot.org/uniprot/IMA1_HUMAN IMA1_HUMAN] Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 5h43" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5h43" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Importin 3D structures\|Importin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Histone acetyltransferase~~]]	+	[[Category: Homo sapiens]]
-	[[Category: ~~Human~~]]	+	[[Category: Large Structures]]
-	[[Category: Li, Y]]	+	[[Category: Li Y]]
-	[[Category: Wang, R]]	+	[[Category: Wang R]]
-	~~[[Category: Importin alpha]]~~	+
-	~~[[Category: Nuclear import]]~~	+
-	~~[[Category: Protein transport-transferase complex~~]]	+

OCA at 07:23, 13 December 2017

OCA — Wed, 13 Dec 2017 07:23:18 GMT

←Older revision		Revision as of 07:23, 13 December 2017
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	<StructureSection load='5h43' size='340' side='right' caption='[[5h43]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='5h43' size='340' side='right' caption='[[5h43]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5h43]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H43 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5H43 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5h43]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H43 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5H43 FirstGlance]. <br>
-	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histone_acetyltransferase Histone acetyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.48 2.3.1.48] </span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">KPNA2, RCH1, SRP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), KAT8, MOF, MYST1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histone_acetyltransferase Histone acetyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.48 2.3.1.48] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5h43 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h43 OCA], [http://pdbe.org/5h43 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h43 RCSB], [http://www.ebi.ac.uk/pdbsum/5h43 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h43 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5h43 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h43 OCA], [http://pdbe.org/5h43 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h43 RCSB], [http://www.ebi.ac.uk/pdbsum/5h43 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h43 ProSAT]</span></td></tr>
	</table>		</table>
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	</StructureSection>		</StructureSection>
	[[Category: Histone acetyltransferase]]		[[Category: Histone acetyltransferase]]
		+	[[Category: Human]]
	[[Category: Li, Y]]		[[Category: Li, Y]]
	[[Category: Wang, R]]		[[Category: Wang, R]]

OCA at 07:00, 25 October 2017

OCA — Wed, 25 Oct 2017 07:00:50 GMT

←Older revision		Revision as of 07:00, 25 October 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5h43 is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Structural and mechanistical studies of the nuclear import by Importin-alpha==
		+	<StructureSection load='5h43' size='340' side='right' caption='[[5h43]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5h43]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H43 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5H43 FirstGlance]. <br>
		+	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histone_acetyltransferase Histone acetyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.48 2.3.1.48] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5h43 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h43 OCA], [http://pdbe.org/5h43 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h43 RCSB], [http://www.ebi.ac.uk/pdbsum/5h43 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h43 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/IMA1_HUMAN IMA1_HUMAN]] Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. [[http://www.uniprot.org/uniprot/KAT8_HUMAN KAT8_HUMAN]] Histone acetyltransferase which may be involved in transcriptional activation. May influence the function of ATM. As part of the MSL complex it is involved in acetylation of nucleosomal histone H4 producing specifically H4K16ac. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. That activity is less specific than the one of the MSL complex.<ref>PMID:12397079</ref> <ref>PMID:15923642</ref> <ref>PMID:20018852</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The histone acetyltransferase MOF (males-absent-on-the-first) acetylates the histone H4, a modification important for many biological processes, including chromatin organization, transcriptional regulation, DNA replication, recombination and repair, as well as autophagy. Depletion of MOF induces serious consequences due to the reduction of histone acetylation, such as nuclear morphological defects and cancer. Despite the critical roles of MOF in the nucleus, the structural or functional mechanisms of the nucleocytoplasmic transport of MOF remain elusive. Here, we identified novel importin alpha1-specific nuclear localization signals (NLSs) in the N-terminal of human MOF. The crystal structure of MOF NLSs in complex with importin alpha1 further revealed a unique binding mode of MOF, with two independent NLSs binding to importin alpha1 major and minor sites, respectively. The second NLS of MOF displays an unexpected alpha-helical conformation in the C-terminus, with more extensive contacts with importin alpha1 not limited in the minor site. Mutations of the key residues on MOF and importin alpha1 lead to the reduction of their interaction as well as the nuclear import of MOF, revealing an essential role of NLS2 of MOF in interacting with importin alpha1 minor site. Taken together, we provide structural mechanisms underlying the nucleocytoplasmic transport of MOF, which will be of great importance in understanding the functional regulation of MOF in various biological processes.

-	~~Authors: Wang~~, R., Li, Y.	+	Structural insights into the nuclear import of the histone acetyltransferase MOF by importin alpha1.,Zheng W, Wang R, Liu X, Tian S, Yao B, Chen A, Jin S, Li Y Traffic. 2017 Oct 9. doi: 10.1111/tra.12534. PMID:28991411<ref>PMID:28991411</ref>

-	~~Description: Structural and mechanistical studies~~ of the ~~nuclear import by Importin-alpha~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	[[Category: ~~Wang, R~~]]	+	<div class="pdbe-citations 5h43" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Histone acetyltransferase]]
	[[Category: Li, Y]]		[[Category: Li, Y]]
		+	[[Category: Wang, R]]
		+	[[Category: Importin alpha]]
		+	[[Category: Nuclear import]]
		+	[[Category: Protein transport-transferase complex]]

OCA at 10:42, 27 September 2017

OCA — Wed, 27 Sep 2017 10:42:10 GMT

←Older revision		Revision as of 10:42, 27 September 2017
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	Description: Structural and mechanistical studies of the nuclear import by Importin-alpha		Description: Structural and mechanistical studies of the nuclear import by Importin-alpha
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Li, Y]]
	[[Category: Wang, R]]		[[Category: Wang, R]]
		+	[[Category: Li, Y]]

OCA at 10:59, 4 January 2017

OCA — Wed, 04 Jan 2017 10:59:04 GMT

←Older revision		Revision as of 10:59, 4 January 2017
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5h43 is ON HOLD	+	The entry 5h43 is ON HOLD until Paper Publication

	Authors: Wang, R., Li, Y.		Authors: Wang, R., Li, Y.

OCA at 13:42, 9 December 2016

OCA — Fri, 09 Dec 2016 13:42:45 GMT

←Older revision		Revision as of 13:42, 9 December 2016
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	The entry 5h43 is ON HOLD		The entry 5h43 is ON HOLD

-	Authors: Wang ~~Rui~~, Li ~~Yong~~	+	Authors: Wang, R., Li, Y.

	Description: Structural and mechanistical studies of the nuclear import by Importin-alpha		Description: Structural and mechanistical studies of the nuclear import by Importin-alpha
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Wang ~~Rui~~, ~~Li Yong~~]]	+	[[Category: Li, Y]]
		+	[[Category: Wang, R]]

OCA: Protected "5h43" [edit=sysop:move=sysop]

OCA — Wed, 02 Nov 2016 12:58:34 GMT

Protected "5h43" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:58, 2 November 2016

OCA: New page: '''Unreleased structure''' The entry 5h43 is ON HOLD Authors: Wang Rui, Li Yong Description: Structural and mechanistical studies of the nuclear import by Importin-alpha [[Category: Un...

OCA — Wed, 02 Nov 2016 12:58:32 GMT

New page: '''Unreleased structure''' The entry 5h43 is ON HOLD Authors: Wang Rui, Li Yong Description: Structural and mechanistical studies of the nuclear import by Importin-alpha [[Category: Un...

New page

'''Unreleased structure'''

The entry 5h43 is ON HOLD

Authors: Wang Rui, Li Yong

Description: Structural and mechanistical studies of the nuclear import by Importin-alpha
[[Category: Unreleased Structures]]
[[Category: Wang Rui, Li Yong]]