5hhl - Revision history

OCA at 07:36, 9 August 2023

OCA — Wed, 09 Aug 2023 07:36:46 GMT

←Older revision		Revision as of 07:36, 9 August 2023
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	<StructureSection load='5hhl' size='340' side='right'caption='[[5hhl]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='5hhl' size='340' side='right'caption='[[5hhl]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hhl]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Agathobacter_rectalis_m104~~/1 ~~Agathobacter rectalis m104~~/1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HHL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5HHL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hhl]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Eubacterium_rectale_M104/1 Eubacterium rectale M104/1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HHL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HHL FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hhk\|5hhk]]~~, [[~~5hhj~~\|~~5hhj~~]]</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~ERE_01490 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=657317 Agathobacter rectalis M104~~/~~1])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hhl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhl OCA], [https://pdbe.org/5hhl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hhl RCSB], [https://www.ebi.ac.uk/pdbsum/5hhl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hhl ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5hhl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhl OCA], [~~http~~://pdbe.org/5hhl PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5hhl RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5hhl PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5hhl ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/D4JMT6_9FIRM D4JMT6_9FIRM]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Agathobacter rectalis m104/1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Pyle~~, A M~~]]	+	[[Category: Pyle AM]]
-	[[Category: Zhao, C]]	+	[[Category: Zhao C]]
-	~~[[Category: Group ii intron]]~~	+
-	~~[[Category: Rna binding protein~~]]	+

OCA at 11:41, 25 December 2019

OCA — Wed, 25 Dec 2019 11:41:23 GMT

←Older revision		Revision as of 11:41, 25 December 2019
Line 1:		Line 1:

	==Reverse transcriptase domain of group II intron maturase from Eubacterium rectale in P21 space group==		==Reverse transcriptase domain of group II intron maturase from Eubacterium rectale in P21 space group==
-	<StructureSection load='5hhl' size='340' side='right' caption='[[5hhl]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='5hhl' size='340' side='right'caption='[[5hhl]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5hhl]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Agathobacter_rectalis_m104/1 Agathobacter rectalis m104/1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HHL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HHL FirstGlance]. <br>		<table><tr><td colspan='2'>[[5hhl]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Agathobacter_rectalis_m104/1 Agathobacter rectalis m104/1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HHL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HHL FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Agathobacter rectalis m104/1]]		[[Category: Agathobacter rectalis m104/1]]
		+	[[Category: Large Structures]]
	[[Category: Pyle, A M]]		[[Category: Pyle, A M]]
	[[Category: Zhao, C]]		[[Category: Zhao, C]]
	[[Category: Group ii intron]]		[[Category: Group ii intron]]
	[[Category: Rna binding protein]]		[[Category: Rna binding protein]]

OCA at 12:47, 6 November 2017

OCA — Mon, 06 Nov 2017 12:47:49 GMT

←Older revision		Revision as of 12:47, 6 November 2017
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	<StructureSection load='5hhl' size='340' side='right' caption='[[5hhl]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='5hhl' size='340' side='right' caption='[[5hhl]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hhl]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HHL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HHL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hhl]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Agathobacter_rectalis_m104/1 Agathobacter rectalis m104/1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HHL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HHL FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hhk\|5hhk]], [[5hhj\|5hhj]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hhk\|5hhk]], [[5hhj\|5hhj]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ERE_01490 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=657317 Agathobacter rectalis M104/1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hhl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhl OCA], [http://pdbe.org/5hhl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hhl RCSB], [http://www.ebi.ac.uk/pdbsum/5hhl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hhl ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hhl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhl OCA], [http://pdbe.org/5hhl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hhl RCSB], [http://www.ebi.ac.uk/pdbsum/5hhl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hhl ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Agathobacter rectalis m104/1]]
	[[Category: Pyle, A M]]		[[Category: Pyle, A M]]
	[[Category: Zhao, C]]		[[Category: Zhao, C]]
	[[Category: Group ii intron]]		[[Category: Group ii intron]]
	[[Category: Rna binding protein]]		[[Category: Rna binding protein]]

OCA at 02:37, 13 July 2016

OCA — Wed, 13 Jul 2016 02:37:30 GMT

←Older revision		Revision as of 02:37, 13 July 2016
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hhk\|5hhk]], [[5hhj\|5hhj]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hhk\|5hhk]], [[5hhj\|5hhj]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hhl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhl OCA], [http://pdbe.org/5hhl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hhl RCSB], [http://www.ebi.ac.uk/pdbsum/5hhl PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hhl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhl OCA], [http://pdbe.org/5hhl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hhl RCSB], [http://www.ebi.ac.uk/pdbsum/5hhl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hhl ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 08:04, 1 June 2016

OCA — Wed, 01 Jun 2016 08:04:06 GMT

←Older revision		Revision as of 08:04, 1 June 2016
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hhl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhl OCA], [http://pdbe.org/5hhl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hhl RCSB], [http://www.ebi.ac.uk/pdbsum/5hhl PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hhl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhl OCA], [http://pdbe.org/5hhl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hhl RCSB], [http://www.ebi.ac.uk/pdbsum/5hhl PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Group II introns are self-splicing ribozymes that are essential in many organisms, and they have been hypothesized to share a common evolutionary ancestor with the spliceosome. Although structural similarity of RNA components supports this connection, it is of interest to determine whether associated protein factors also share an evolutionary heritage. Here we present the crystal structures of reverse transcriptase (RT) domains from two group II intron-encoded proteins (maturases) from Roseburia intestinalis and Eubacterium rectale, obtained at 1.2-A and 2.1-A resolution, respectively. These domains are more similar in architecture to the spliceosomal Prp8 RT-like domain than to any other RTs, and they share substantial similarity with flaviviral RNA polymerases. The RT domain itself is sufficient for binding intron RNA with high affinity and specificity, and it is contained within an active RT enzyme. These studies provide a foundation for understanding structure-function relationships within group II intron-maturase complexes.
		+
		+	Crystal structures of a group II intron maturase reveal a missing link in spliceosome evolution.,Zhao C, Pyle AM Nat Struct Mol Biol. 2016 May 2. doi: 10.1038/nsmb.3224. PMID:27136328<ref>PMID:27136328</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5hhl" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 19:45, 13 May 2016

OCA — Fri, 13 May 2016 19:45:14 GMT

←Older revision		Revision as of 19:45, 13 May 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5hhl ~~is ON HOLD until Paper Publication~~	+	==Reverse transcriptase domain of group II intron maturase from Eubacterium rectale in P21 space group==
-		+	<StructureSection load='5hhl' size='340' side='right' caption='[[5hhl]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~Authors~~: ~~Zhao, C~~.~~, Pyle, A~~.M.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5hhl]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HHL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HHL FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hhk\|5hhk]], [[5hhj\|5hhj]]</td></tr>
-	[[Category: Pyle, A.M]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hhl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hhl OCA], [http://pdbe.org/5hhl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hhl RCSB], [http://www.ebi.ac.uk/pdbsum/5hhl PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Pyle, A M]]
	[[Category: Zhao, C]]		[[Category: Zhao, C]]
		+	[[Category: Group ii intron]]
		+	[[Category: Rna binding protein]]

OCA at 15:17, 10 February 2016

OCA — Wed, 10 Feb 2016 15:17:18 GMT

←Older revision		Revision as of 15:17, 10 February 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5hhl is ON HOLD	+	The entry 5hhl is ON HOLD until Paper Publication

	Authors: Zhao, C., Pyle, A.M.		Authors: Zhao, C., Pyle, A.M.

OCA: Protected "5hhl" [edit=sysop:move=sysop]

OCA — Wed, 20 Jan 2016 15:27:00 GMT

Protected "5hhl" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:27, 20 January 2016

OCA: New page: '''Unreleased structure''' The entry 5hhl is ON HOLD Authors: Zhao, C., Pyle, A.M. Description: Category: Unreleased Structures Category: Pyle, A.M Category: Zhao, C

OCA — Wed, 20 Jan 2016 15:26:59 GMT

New page: '''Unreleased structure''' The entry 5hhl is ON HOLD Authors: Zhao, C., Pyle, A.M. Description: Category: Unreleased Structures Category: Pyle, A.M Category: Zhao, C

New page

'''Unreleased structure'''

The entry 5hhl is ON HOLD

Authors: Zhao, C., Pyle, A.M.

Description:
[[Category: Unreleased Structures]]
[[Category: Pyle, A.M]]
[[Category: Zhao, C]]