5hjy - Revision history

OCA at 07:39, 9 August 2023

OCA — Wed, 09 Aug 2023 07:39:30 GMT

←Older revision		Revision as of 07:39, 9 August 2023
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	<StructureSection load='5hjy' size='340' side='right'caption='[[5hjy]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='5hjy' size='340' side='right'caption='[[5hjy]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hjy]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"rhodobacillus_palustris"_molisch_1907 "rhodobacillus~~ palustris~~" molisch 1907~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HJY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5HJY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hjy]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HJY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HJY FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=CAP:2~~-~~CARBOXYARABINITOL-1~~,~~5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~KCX~~:~~LYSINE+NZ~~-~~CARBOXYLIC+ACID~~'>~~KCX~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td>~~<td class="sblockDat">[[5han\|5han]]~~, ~~[[5hao\|5hao]], [[5hat\|5hat]], [[5hjx\|5hjx]], [[5hk4\|5hk4]], [[5hql\|5hql]], [[5hqm\|5hqm]]~~<~~/td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hjy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hjy OCA], [https://pdbe.org/5hjy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hjy RCSB], [https://www.ebi.ac.uk/pdbsum/5hjy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hjy ProSAT]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5hjy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hjy OCA], [~~http~~://pdbe.org/5hjy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5hjy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5hjy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5hjy ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RBL2_RHOPA RBL2_RHOPA]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).	+	[https://www.uniprot.org/uniprot/RBL2_RHOPA RBL2_RHOPA] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).

	==See Also==		==See Also==
-	*[[RuBisCO\|RuBisCO]]	+	*[[RuBisCO 3D structures\|RuBisCO 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Rhodobacillus palustris molisch 1907]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Ribulose-bisphosphate carboxylase~~]]	+	[[Category: Rhodopseudomonas palustris]]
-	[[Category: Arbing~~, M A~~]]	+	[[Category: Arbing MA]]
-	[[Category: Cascio, D]]	+	[[Category: Cascio D]]
-	[[Category: North~~, J A~~]]	+	[[Category: North JA]]
-	[[Category: Satagopan, S]]	+	[[Category: Satagopan S]]
-	[[Category: Shin, A]]	+	[[Category: Shin A]]
-	[[Category: Tabita~~, F R]]~~	+	[[Category: Tabita FR]]
-	~~[[Category: Hexamer]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Rubisco~~]]	+

OCA at 09:05, 4 December 2019

OCA — Wed, 04 Dec 2019 09:05:57 GMT

←Older revision		Revision as of 09:05, 4 December 2019
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	==Structure function studies of R. palustris RubisCO (I165T mutant; CABP-bound)==		==Structure function studies of R. palustris RubisCO (I165T mutant; CABP-bound)==
-	<StructureSection load='5hjy' size='340' side='right' caption='[[5hjy]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='5hjy' size='340' side='right'caption='[[5hjy]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5hjy]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodobacillus_palustris"_molisch_1907 "rhodobacillus palustris" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HJY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HJY FirstGlance]. <br>		<table><tr><td colspan='2'>[[5hjy]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodobacillus_palustris"_molisch_1907 "rhodobacillus palustris" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HJY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HJY FirstGlance]. <br>
Line 12:		Line 12:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/RBL2_RHOPA RBL2_RHOPA]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).		[[http://www.uniprot.org/uniprot/RBL2_RHOPA RBL2_RHOPA]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).
		+
		+	==See Also==
		+	*[[RuBisCO\|RuBisCO]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Rhodobacillus palustris molisch 1907]]		[[Category: Rhodobacillus palustris molisch 1907]]
		+	[[Category: Large Structures]]
	[[Category: Ribulose-bisphosphate carboxylase]]		[[Category: Ribulose-bisphosphate carboxylase]]
	[[Category: Arbing, M A]]		[[Category: Arbing, M A]]

OCA at 12:48, 6 November 2017

OCA — Mon, 06 Nov 2017 12:48:01 GMT

←Older revision		Revision as of 12:48, 6 November 2017
Line 3:		Line 3:
	<StructureSection load='5hjy' size='340' side='right' caption='[[5hjy]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='5hjy' size='340' side='right' caption='[[5hjy]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hjy]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HJY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HJY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hjy]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodobacillus_palustris"_molisch_1907 "rhodobacillus palustris" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HJY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HJY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Rhodobacillus palustris molisch 1907]]
	[[Category: Ribulose-bisphosphate carboxylase]]		[[Category: Ribulose-bisphosphate carboxylase]]
	[[Category: Arbing, M A]]		[[Category: Arbing, M A]]

OCA at 00:41, 19 January 2017

OCA — Thu, 19 Jan 2017 00:41:20 GMT

←Older revision		Revision as of 00:41, 19 January 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5hjy is ~~ON HOLD until Paper Publication~~	+	==Structure function studies of R. palustris RubisCO (I165T mutant; CABP-bound)==
-		+	<StructureSection load='5hjy' size='340' side='right' caption='[[5hjy]], [[Resolution\|resolution]] 2.30Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5hjy]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HJY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HJY FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5han\|5han]], [[5hao\|5hao]], [[5hat\|5hat]], [[5hjx\|5hjx]], [[5hk4\|5hk4]], [[5hql\|5hql]], [[5hqm\|5hqm]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hjy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hjy OCA], [http://pdbe.org/5hjy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hjy RCSB], [http://www.ebi.ac.uk/pdbsum/5hjy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hjy ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RBL2_RHOPA RBL2_RHOPA]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Ribulose-bisphosphate carboxylase]]
		+	[[Category: Arbing, M A]]
		+	[[Category: Cascio, D]]
		+	[[Category: North, J A]]
		+	[[Category: Satagopan, S]]
		+	[[Category: Shin, A]]
		+	[[Category: Tabita, F R]]
		+	[[Category: Hexamer]]
		+	[[Category: Lyase]]
		+	[[Category: Rubisco]]

OCA at 13:40, 15 May 2016

OCA — Sun, 15 May 2016 13:40:20 GMT

←Older revision		Revision as of 13:40, 15 May 2016
Line 3:		Line 3:
	The entry 5hjy is ON HOLD until Paper Publication		The entry 5hjy is ON HOLD until Paper Publication

-	Authors: ~~Arbing, M.A., Shin, A., Cascio, D., Satagopan, S., North, J.A., Tabita, F.R.~~	+	Authors:

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Shin, A]]
-	[[Category: Tabita, F.R]]
-	[[Category: Satagopan, S]]
-	[[Category: Arbing, M.A]]
-	[[Category: North, J.A]]
-	[[Category: Cascio, D]]

OCA at 13:52, 3 February 2016

OCA — Wed, 03 Feb 2016 13:52:18 GMT

←Older revision		Revision as of 13:52, 3 February 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5hjy is ON HOLD	+	The entry 5hjy is ON HOLD until Paper Publication

-	Authors: Arbing, M.A., Shin, A., Satagopan, S., ~~Varaljay~~, V.A., Tabita, F.R.	+	Authors: Arbing, M.A., Shin, A., Cascio, D., Satagopan, S., North, J.A., Tabita, F.R.

	Description:		Description:
Line 9:		Line 9:
	[[Category: Shin, A]]		[[Category: Shin, A]]
	[[Category: Tabita, F.R]]		[[Category: Tabita, F.R]]
-	[[Category: Varaljay, V.A]]
	[[Category: Satagopan, S]]		[[Category: Satagopan, S]]
	[[Category: Arbing, M.A]]		[[Category: Arbing, M.A]]
		+	[[Category: North, J.A]]
		+	[[Category: Cascio, D]]

OCA: Protected "5hjy" [edit=sysop:move=sysop]

OCA — Wed, 20 Jan 2016 15:36:58 GMT

Protected "5hjy" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:36, 20 January 2016

OCA: New page: '''Unreleased structure''' The entry 5hjy is ON HOLD Authors: Arbing, M.A., Shin, A., Satagopan, S., Varaljay, V.A., Tabita, F.R. Description: Category: Unreleased Structures [[Ca...

OCA — Wed, 20 Jan 2016 15:36:57 GMT

New page: '''Unreleased structure''' The entry 5hjy is ON HOLD Authors: Arbing, M.A., Shin, A., Satagopan, S., Varaljay, V.A., Tabita, F.R. Description: Category: Unreleased Structures [[Ca...

New page

'''Unreleased structure'''

The entry 5hjy is ON HOLD

Authors: Arbing, M.A., Shin, A., Satagopan, S., Varaljay, V.A., Tabita, F.R.

Description:
[[Category: Unreleased Structures]]
[[Category: Shin, A]]
[[Category: Tabita, F.R]]
[[Category: Varaljay, V.A]]
[[Category: Satagopan, S]]
[[Category: Arbing, M.A]]