5hnl - Revision history

OCA at 10:48, 16 August 2023

OCA — Wed, 16 Aug 2023 10:48:06 GMT

←Older revision		Revision as of 10:48, 16 August 2023
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	<StructureSection load='5hnl' size='340' side='right'caption='[[5hnl]], [[Resolution\|resolution]] 2.42Å' scene=''>		<StructureSection load='5hnl' size='340' side='right'caption='[[5hnl]], [[Resolution\|resolution]] 2.42Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hnl]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HNL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5HNL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hnl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HNL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HNL FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[5hnc\|5hnc]]</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.424Å</td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>~~[~~http://en.wikipedia.org/wiki/Lysozyme Lysozyme~~]~~, with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.~~2.~~1.17 3.2.1.17] </span>~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hnl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hnl OCA], [https://pdbe.org/5hnl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hnl RCSB], [https://www.ebi.ac.uk/pdbsum/5hnl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hnl ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5hnl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hnl OCA], [~~http~~://pdbe.org/5hnl PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5hnl RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5hnl PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5hnl ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Baba S]]
-	[[Category: Baba, S]]	+	[[Category: Kimura F]]
-	[[Category: Kimura, F]]	+	[[Category: Kimura T]]
-	[[Category: Kimura, T]]	+	[[Category: Kusaka K]]
-	[[Category: Kusaka, K]]	+	[[Category: Mizuno N]]
-	[[Category: Mizuno, N]]	+	[[Category: Tsukui S]]
-	[[Category: Tsukui, S]]	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 08:25, 27 May 2020

OCA — Wed, 27 May 2020 08:25:01 GMT

←Older revision		Revision as of 08:25, 27 May 2020
Line 1:		Line 1:

	==In-house X-ray single crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels==		==In-house X-ray single crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels==
-	<StructureSection load='5hnl' size='340' side='right' caption='[[5hnl]], [[Resolution\|resolution]] 2.42Å' scene=''>	+	<StructureSection load='5hnl' size='340' side='right'caption='[[5hnl]], [[Resolution\|resolution]] 2.42Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hnl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HNL OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5HNL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hnl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HNL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5HNL FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hnc\|5hnc]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hnc\|5hnc]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5hnl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hnl OCA], [http://pdbe.org/5hnl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hnl RCSB], [http://www.ebi.ac.uk/pdbsum/5hnl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hnl ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5hnl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hnl OCA], [http://pdbe.org/5hnl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hnl RCSB], [http://www.ebi.ac.uk/pdbsum/5hnl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hnl ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 5hnl" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5hnl" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 24:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Baba, S]]		[[Category: Baba, S]]

OCA at 15:22, 26 July 2016

OCA — Tue, 26 Jul 2016 15:22:43 GMT

←Older revision		Revision as of 15:22, 26 July 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5hnl is ~~ON HOLD~~	+	==In-house X-ray single crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels==
		+	<StructureSection load='5hnl' size='340' side='right' caption='[[5hnl]], [[Resolution\|resolution]] 2.42Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5hnl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HNL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HNL FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hnc\|5hnc]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hnl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hnl OCA], [http://pdbe.org/5hnl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hnl RCSB], [http://www.ebi.ac.uk/pdbsum/5hnl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hnl ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein microcrystals magnetically aligned in D2O hydrogels were subjected to neutron diffraction measurements, and reflections were observed for the first time to a resolution of 3.4 A from lysozyme microcrystals ( approximately 10 x 10 x 50 microm). This result demonstrated the possibility that magnetically oriented microcrystals consolidated in D2O gels may provide a promising means to obtain single-crystal neutron diffraction from proteins that do not crystallize at the sizes required for neutron diffraction structure determination. In addition, lysozyme microcrystals aligned in H2O hydrogels allowed structure determination at a resolution of 1.76 A at room temperature by X-ray diffraction. The use of gels has advantages since the microcrystals are measured under hydrated conditions.

-	~~Authors: Tsukui~~, S., Kimura, F., Kusaka, K., Baba, S., Mizuno, N., Kimura, T.	+	Neutron and X-ray single-crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels.,Tsukui S, Kimura F, Kusaka K, Baba S, Mizuno N, Kimura T Acta Crystallogr D Struct Biol. 2016 Jul 1;72(Pt 7):823-9. doi:, 10.1107/S2059798316007415. Epub 2016 Jun 23. PMID:27377379<ref>PMID:27377379</ref>

-	~~Description: In~~-~~house X~~-~~ray single crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: ~~Kimura~~, T]]	+	<div class="pdbe-citations 5hnl" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Lysozyme]]
		+	[[Category: Baba, S]]
	[[Category: Kimura, F]]		[[Category: Kimura, F]]
		+	[[Category: Kimura, T]]
		+	[[Category: Kusaka, K]]
	[[Category: Mizuno, N]]		[[Category: Mizuno, N]]
	[[Category: Tsukui, S]]		[[Category: Tsukui, S]]
-	[[Category: ~~Baba, S]]~~	+	[[Category: Hydrolase]]
-	~~[[Category: Kusaka, K~~]]	+

OCA: Protected "5hnl" [edit=sysop:move=sysop]

OCA — Thu, 28 Jan 2016 00:56:08 GMT

Protected "5hnl" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:56, 28 January 2016

OCA: New page: '''Unreleased structure''' The entry 5hnl is ON HOLD Authors: Tsukui, S., Kimura, F., Kusaka, K., Baba, S., Mizuno, N., Kimura, T. Description: In-house X-ray single crystal diffractio...

OCA — Thu, 28 Jan 2016 00:56:07 GMT

New page: '''Unreleased structure''' The entry 5hnl is ON HOLD Authors: Tsukui, S., Kimura, F., Kusaka, K., Baba, S., Mizuno, N., Kimura, T. Description: In-house X-ray single crystal diffractio...

New page

'''Unreleased structure'''

The entry 5hnl is ON HOLD

Authors: Tsukui, S., Kimura, F., Kusaka, K., Baba, S., Mizuno, N., Kimura, T.

Description: In-house X-ray single crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels
[[Category: Unreleased Structures]]
[[Category: Kimura, T]]
[[Category: Kimura, F]]
[[Category: Mizuno, N]]
[[Category: Tsukui, S]]
[[Category: Baba, S]]
[[Category: Kusaka, K]]